Lag0004976 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004976
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMADS-box protein SVP-like
Locationchr6: 9213162 .. 9215127 (-)
RNA-Seq ExpressionLag0004976
SyntenyLag0004976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTGACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGTGCTCTGCGATGCTGAGGTGGCACTGATCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGGTATGAATGTGGAGATGGAGATTTGAACTTTCAATTGATAGTAAAAGTTTACCGATGTCTTGACTGTTGAGTTATGCTTACCGTCTGCAAGATTGTGTTAATTAGTGGATGGGTTTTGTTTAACTTGGATTCCGTTTGGTAACTATTTGAATTTTGGTTTTAGTTTTCGAGAGTCAAGTCTGTTTCCTTTTCATTTTTTACTGTAACACATTTGAATTTTTAGTCTAATTCTAAAAATATAAACAAGTTTTTTGAAAACTACTGGTTTTATAAATTAAGAGAAAAGGGTAGATAATTTTCAAAACCGAAAAAATAAAAATCAAATAGTTATAAAACAAGACCTTGTTTACTTGAAAAATGTCTTGGTTTTCATGAGTTGAGCTGAAAAATTTTGCATCGAAGCGAGCATAGTTCAGCGGTAATTGACGTGTATTCTCAACCAGGAGGAAATACATGCTGAAGAATTCTTATGCCATTTTTTCAATTTGGTGTTGATTTTTGTGTTGTGCATGTCATATTGAGTTCTAATTTCAGAAAGAAAATGTGGTAGGTTTCAGTTTCAAGAAGCACTTTCTATTTTGGCTTTGGGATTAATTGAAATTTAGGCTCTTTTTCCCCTACCTGACTAATTTTATATATTTTTTGAATTATTTGAGCCACTGAATTAAATTTGTGTATTTAATATTAGAAATCCCCAAATTTCTCACCTGGAAATTTTTTAAAGATTTCTGACTTATGAATTGAATTATGTAACCCTAGAATTAGAAAGTTGAACCTAAATATGGTTTCGGTAGATTTCATTTAAGACTTTTGAAACATGTGTCTCAATACTATACACTAGTTTATATACTTCTTGATATAATATCATTTAATAATTTATAGAACAAGAATAATCAATAAGCTATTAAATGTTTCTGAAAAGTTATATTTAATATAAGGTATAGAAATTCAGACTTTCTTGACTTTATATGAAACAAACTTCACTTACTAAAATTTTTGGTCAAGTTTTTTTTTTTTTTTTGGGACATTTAATGTAATAGTTGTCACCATTAATTTGAACTCACCCACCTGTTGATTTTTTTTATTAAAAAAAAAAAAAATTATTTTGTTTCATATCTACTTCACAATATTGTTTGGATTTTGAATGAAACTTATCCCAGGAAAATCAGGAATTTATTCCATTATCAACAGTGTGTATTATCATTAAAGTCATAACAAGACAACTAAAGAACAAAAGTTAATGATGATCTAAGATTGCTTTTAAATTTTGAAATAATTAAAGAACATTATTGGTGGGTGTCACATTCTCAGACATTGATGTTCAAATAACAAAATATAACAAAGAAATATATGAATTAAAAAAATGTTATAAATGAAACTTTATATATTTAATTCAACAAGCGTAATAAACGAATTATATGGATGATACAATTTTTGCAAATGTGGCCGAATAATTAATTTAAGTTTTTCATTTGGGTAATATATTAGAAATATACTTCATCTTTTTTATCTGTATTATTATTAATTTTATTTATTTTTTGACGTTGCCCATGTTATTTAATTATATATATTTGATGCAGCGTCAAGGATGTTATAGCGAGGTACAGTTTGCACTCCAGTAACCTTGGAAAATTGGAATATCCATTGCTCGACTTGCAGGTAATCAGTGTGTATGTATATTATTAATTTCGTGTCTAAAAGGCCTCGATTTATAAGTGTATAATAAAATTTTGAATATTTAATTTTGTGTTTAATAGGTCTATAATCTTTTCGACGCTTTCTAA

mRNA sequence

ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTGACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGTGCTCTGCGATGCTGAGGTGGCACTGATCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGCGTCAAGGATGTTATAGCGAGGTACAGTTTGCACTCCAGTAACCTTGGAAAATTGGAATATCCATTGCTCGACTTGCAGGTCTATAATCTTTTCGACGCTTTCTAA

Coding sequence (CDS)

ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTGACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGTGCTCTGCGATGCTGAGGTGGCACTGATCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGCGTCAAGGATGTTATAGCGAGGTACAGTTTGCACTCCAGTAACCTTGGAAAATTGGAATATCCATTGCTCGACTTGCAGGTCTATAATCTTTTCGACGCTTTCTAA

Protein sequence

MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYNLFDAF
Homology
[Close]
BLAST of Lag0004976 vs. NCBI nr
Match: XP_023537832.1 (MADS-box protein SVP-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSS
Sbjct: 1  MAREKIKIKKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQVYN 91
          SVKDVI RY+LHSSNLG+LE P LDLQ+ N
Sbjct: 61 SVKDVITRYNLHSSNLGELEDPSLDLQLEN 90

[Close]
BLAST of Lag0004976 vs. NCBI nr
Match: XP_023537833.1 (MADS-box protein SVP-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSS
Sbjct: 1  MAREKIKIKKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQVYN 91
          SVKDVI RY+LHSSNLG+LE P LDLQ+ N
Sbjct: 61 SVKDVITRYNLHSSNLGELEDPSLDLQLEN 90

[Close]
BLAST of Lag0004976 vs. NCBI nr
Match: XP_023537829.1 (MADS-box protein SVP-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537830.1 MADS-box protein SVP-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSS
Sbjct: 1  MAREKIKIKKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQVYN 91
          SVKDVI RY+LHSSNLG+LE P LDLQ+ N
Sbjct: 61 SVKDVITRYNLHSSNLGELEDPSLDLQLEN 90

[Close]
BLAST of Lag0004976 vs. NCBI nr
Match: XP_038886182.1 (MADS-box protein JOINTLESS-like isoform X1 [Benincasa hispida] >XP_038886183.1 MADS-box protein JOINTLESS-like isoform X1 [Benincasa hispida] >XP_038886184.1 MADS-box protein JOINTLESS-like isoform X1 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 6.8e-33
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL+IFSATGK FE+SSS
Sbjct: 1  MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQVYN 91
          SVK+VIARY+LHS+NLGKLEYP L LQ+ N
Sbjct: 61 SVKEVIARYNLHSTNLGKLEYPSLGLQLEN 90

[Close]
BLAST of Lag0004976 vs. NCBI nr
Match: XP_004152597.1 (MADS-box protein JOINTLESS [Cucumis sativus] >XP_031736345.1 MADS-box protein JOINTLESS [Cucumis sativus] >KAE8652140.1 hypothetical protein Csa_021854 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.8e-33
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL++FSATGK FE+S+S
Sbjct: 1  MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLVFSATGKFFEYSNS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQV 89
          S+KDVIARY+LHSSNLGKLEYP + LQV
Sbjct: 61 SIKDVIARYNLHSSNLGKLEYPSIGLQV 88

[Close]
BLAST of Lag0004976 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-30
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+VALIIFS+TGKLFEF SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQV 89
          S+K+V+ R++L S NL KL+ P L+LQ+
Sbjct: 61 SMKEVLERHNLQSKNLEKLDQPSLELQL 88

[Close]
BLAST of Lag0004976 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-30
Identity = 65/82 (79.27%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKI+I+KIDN+TARQVTFSKRRRG+FKKA+ELSVLCDA+VALIIFSATGKLFEFSSS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYP 83
           ++D++ RYSLH+SN+ KL  P
Sbjct: 61 RMRDILGRYSLHASNINKLMDP 82

[Close]
BLAST of Lag0004976 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-30
Identity = 67/88 (76.14%), Postives = 79/88 (89.77%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MAREKI+I+KIDN TARQVTFSKRRRGLFKKAEELSVLCDA+VALIIFS+TGKLF++SSS
Sbjct: 1  MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQV 89
          S+K ++ R  LHS NL KL+ P L+LQ+
Sbjct: 61 SMKQILERRDLHSKNLEKLDQPSLELQL 88

[Close]
BLAST of Lag0004976 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-26
Identity = 59/88 (67.05%), Postives = 76/88 (86.36%), Query Frame = 0 

Query: 1  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSS 60
          MARE+ +I++I++  ARQVTFSKRRRGLFKKAEELSVLCDA+VALI+FS+TGKL  F+SS
Sbjct: 1  MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61 SVKDVIARYSLHSSNLGKLEYPLLDLQV 89
          S+ ++I +Y+ HS+NLGK E P LDL +
Sbjct: 61 SMNEIIDKYNTHSNNLGKAEQPSLDLNL 88

[Close]
BLAST of Lag0004976 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 6.4e-26
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 3   REKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSV 62
           RE+I IR+IDNL ARQVTFSKRRRGLFKKAEELS+LCDAEV L++FSATGKLF+F+S+S+
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 63  KDVIARYSLHSSNLGKLEYPLLDLQ 88
           + +I RY+ HS  L + E   LDLQ
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLDLQ 106

The following BLAST results are available for this feature:
BLAST of Lag0004976 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023537832.14.0e-3387.78MADS-box protein SVP-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023537833.14.0e-3387.78MADS-box protein SVP-like isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_023537829.14.0e-3387.78MADS-box protein SVP-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537830.... [more]
XP_038886182.16.8e-3386.67MADS-box protein JOINTLESS-like isoform X1 [Benincasa hispida] >XP_038886183.1 M... [more]
XP_004152597.16.8e-3386.36MADS-box protein JOINTLESS [Cucumis sativus] >XP_031736345.1 MADS-box protein JO... [more]
BLAST of Lag0004976 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FVC11.5e-3078.41MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1[more]
O827943.3e-3079.27MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1[more]
Q9FUY65.6e-3076.14MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1[more]
Q9XJ662.2e-2667.05MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q5K4R06.4e-2669.41MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 76.85
coord: 3..23
score: 55.2
coord: 38..59
score: 65.46
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.1E-38
score: 144.5
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 1.3E-25
score: 88.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 30.094883
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..80
e-value: 2.4E-29
score: 103.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 3..73
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..85
NoneNo IPR availablePANTHERPTHR48019:SF6MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1coord: 1..85
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..75
e-value: 7.92738E-41
score: 127.283

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004976.1Lag0004976.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding