Lag0004846 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004846
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr6: 7696081 .. 7696644 (-)
RNA-Seq Expression	Lag0004846
Synteny	Lag0004846

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCACCCTTCTTGGAGGCCACCGGATCATGGTTCGTGGAAGCTCAACTCAGATGCGTCTTGGATTGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGACTCATCTGGATCTTTAATTGGAGCGGGCTGCAAGCAAGTATTTCGATCGTTGTCAGTAAAAGCCCTTGAAGGTGAGGCTTTGTTAGAAGGTGTGAGAGCGTACCTGAATTGGGTTGACGCTGGCAATTTTAGACCCCCCGGACCGTTGAATCGGATTCCTTAGGCATCATCAAGGCGATTGCGGGCGAGGAGGAAGACTTTTCGGAAGTGGGCTTGATAATTGACTCAATTGTGAATTTGTCGAAGGATGAATCCATTTCCTTCTTTTTTTGTAATAGGAATTACAATACTTTTGGCTCATCAAGTTGCTCTTGCAGCAGCAAAGCATGGGAGTTGCTCTGTTTTTTTTTTTGGTCATGCATCTTCTGGTAGGTTGGAAGATGTGGTGCGGATGAGGGATGAGAGTATCCCTCAATGGTTCATTGATTCTTTTGCTGGTGTAGTTGGTGGTTGA

mRNA sequence

ATGAGTCACCCTTCTTGGAGGCCACCGGATCATGGTTCGTGGAAGCTCAACTCAGATGCGTCTTGGATTGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGACTCATCTGGATCTTTAATTGGAGCGGGCTGCAAGCAAGTATTTCGATCGTTGTCAGTAAAAGCCCTTGAAGGAATTACAATACTTTTGGCTCATCAAGTTGCTCTTGCAGCAGCAAAGCATGGGAGTTGCTCTGTTTTTTTTTTTGGTCATGCATCTTCTGGTAGGTTGGAAGATGTGGTGCGGATGAGGGATGAGAGTATCCCTCAATGGTTCATTGATTCTTTTGCTGGTGTAGTTGGTGGTTGA

Coding sequence (CDS)

ATGAGTCACCCTTCTTGGAGGCCACCGGATCATGGTTCGTGGAAGCTCAACTCAGATGCGTCTTGGATTGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGACTCATCTGGATCTTTAATTGGAGCGGGCTGCAAGCAAGTATTTCGATCGTTGTCAGTAAAAGCCCTTGAAGGAATTACAATACTTTTGGCTCATCAAGTTGCTCTTGCAGCAGCAAAGCATGGGAGTTGCTCTGTTTTTTTTTTTGGTCATGCATCTTCTGGTAGGTTGGAAGATGTGGTGCGGATGAGGGATGAGAGTATCCCTCAATGGTTCATTGATTCTTTTGCTGGTGTAGTTGGTGGTTGA

Protein sequence

MSHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITILLAHQVALAAAKHGSCSVFFFGHASSGRLEDVVRMRDESIPQWFIDSFAGVVGG

Homology

[Close]

BLAST of Lag0004846 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGC-KQVFRSLSVKA 59
           W PP    WKLN DA+W+DS+  GGLGW++RDS G  I A C K + +SL+++A
Sbjct: 78  WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTLEA 131

[Close]

BLAST of Lag0004846 vs. NCBI nr
Match: CAA7055611.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-06
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 2   SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFR 53
           S   WRPP HG WK N+D SW  +  K G+GW++RD +G++I  G K   R
Sbjct: 96  SRSKWRPPTHGQWKCNTDGSWSKNQDKSGVGWILRDHNGNMIWMGAKAYHR 146

[Close]

BLAST of Lag0004846 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 6   WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI 65
           W+PP   SWKLN+DA+W      GG+GW++RD  G +I A C+ +    ++  LE + I
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

[Close]

BLAST of Lag0004846 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 6   WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITIL 65
           W PP    W LN+DASW DS  +GG+GW+IR   G ++ AG + V    +VK LE   IL
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

[Close]

BLAST of Lag0004846 vs. NCBI nr
Match: CAB4279811.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-05
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 5    SWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI 64
            SWR   +G  K+N DA+W+   + GG+GWV+RDS G ++ AGCK   R  S  A+E   I
Sbjct: 1058 SWRKLPYGVLKVNCDAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAI 1117

Query: 65   LLAHQVALAAAKHG 79
                +  LA  + G
Sbjct: 1118 ---REALLACVQSG 1128

The following BLAST results are available for this feature:

BLAST of Lag0004846 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148549.1	2.3e-06	51.85	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
CAA7055611.1	4.0e-06	47.06	unnamed protein product [Microthlaspi erraticum]	[more]
XP_022156777.1	1.5e-05	40.68	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022155262.1	2.6e-05	46.67	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
CAB4279811.1	3.4e-05	40.54	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lag0004846 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 17..73 e-value: 2.3E-5 score: 24.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004846.1	Lag0004846.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity