Lag0004837 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004837
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionATP synthase subunit alpha
Locationchr6: 7597407 .. 7602070 (-)
RNA-Seq ExpressionLag0004837
SyntenyLag0004837
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGGTTTGTTATTGAGAATTTTCTTTATTCCAATGAATGAAATAGTGTATGATAGGATGTGACAGTTGCCTGTCTATTTGTTTCATACAAATTCCTTTGGCGTATAAGTTTGGCCTTTCTAACATTTTGTATTGTAAGATCAGGAAGATGAGAATGCCTTGGACTTTGAAGCTCAGCCACGGCGGCCAGTGGCTCGCTGTAATGCGCCACACGGCTGTTATGATTGTGATTTCTAATGTCTTTTTGCTTTTCCTGTTCCAATTCTTTTGATAAATTGGTCACAATCAGAATCAATCAGGTCTCTTTAAAGTTTGTCCTTTATCATCAATGACTTCCTGCAAGAATCTTCATGATTTGGTATGTTTCCTTCCTTCTTTCTTTGTTTTTTATTGTTGAACTACAAATTTACAGCGTATGAATGAGATATAGTTTTAATTCGGTTCGTCCGGCTCTTAAGTTTTAGTCTAGTTTAACCTATGTCGCTTACGTTCTTATTTCCATTTGGTCTCTTTGATTTTAAAAGTTTTAATTTAATTTTTTCCTAGGCTTGGATTGATCTTTGGTTCGCAAATATTCTTTTTACCCATCTTAAAATCCACTTTTTTTTCCCTCATTCCTATATAGTACAGTAAATGAATACAGTTAGCCAAATAGAAATCAGCTCATTGCCACCTATTATTGTAATAGATTAAATTGAAATAAAGTTCCATCATGGGTTGACCCTAATGGTCAATAAGAGTCATAGAAAAAACAAAGGGCTTAAAGGGAATGGGATGACCACCTACCTAGGATATTTAATATCCTACGAGTTTCCTTGGCAACCAAATGTAGTAGGGTCAAGCGGTTGTCCCGTGAGATTAGTTGAGGTGCGTGTAAGCTAGCTCGGACAAACATCATAGGTAAAATTTGAGTTTGAAAACTCAAGGATCCAAAGACAATCTAATTCAAATTTCGAGAACTAAACGTGTATTTTTCCTTTATGTCGCTTGGTTTAGATGAAGGAATACTGACAAATTCAATAACCATTTAGGCTTGTGCCTTTATTTCTTAAGCTCTCTCATGGTGGATGTTTTGTTTGATTTGTGAACAGATTATTTGATGTTGCTTGTGGCTGTGGGATCAGTTTCTCTATGGTACATTAGATTTTTGTAATTGATAAATAAATTCTGAGACTTAATTATGATAATGACTGGAATTGGTACAACAGGTGGGTGAGAGGATTTCAACCATAGATCTTTTGGTCGTTAGTACAAATTTTATGTAAGTTAAAATCTAATTTTTATAATATTGACTTGAAATTATTACCGTTTTATAATTTTTTTATAATTTGTTCTAAATAGATCGAAAGCTTCCATTGAATTCTTTAAACAGACTTGAAATAAACTCTTTTAAAAAGACTTTAAGTATATAATATAATAACTTGTATATAAAAACACTTGTAAGAAGATGCAACCAAACATGAGTGTTAAAATTCTAAACAATTTTTTATACAAAATGTTTTTTTAAAAAATGCATTATTGAAAAACATTTAAATTAAAATGTATTCCAAACACACCTTAGATACCTTAGATAACCTACCTTAGAATGTATTTCTTAATGGGTAATTTCTTTTCTTTTCTTTATAGTTGTAATTGCAACCTAAATTTGGTTTTCTTTTAAAACAAAAAAAATTTAATAACCTAAATTTGGCTTTGAGAGATCCTGTAAAACCTATTTGTCTTGATTAAAGTATAATATATTAATTCTCCCAAATTTGACGGTATGGCATAAATAAAATGTTGCCAATAATTTATTAAAAATCATAGAAATTTATGATTTGGATGTGTATTTGGTGCAATAATGTCACGTGTATATATATATTTTTTATGAAATCCTCAAAAAACGGATTTGGCATTATATGTCGAGAATAATTCAATAAAAATCATTTTTGGGTTTGTATTTGGTGTAATGATGCCCTGTTTTATAAAATGCCAATGCTTTTAGTTTATTAAAAAAAAAGCTTTTATTCTTCAAAAAAAAAAAAAAAAACTTTTAGTTTGTACACTATTACACTGGTAATGGTGCACTCGTTCTCATTATTTAAAAAATAATTAAATATTTAATGTTGAGTTTTTTTTTGAAGGTTATTGTTGGAGTTAGGTAGATATTATTATGGGAAGGGTGAAAAGTGCTAAATTATAAAAATATTGCTTGTTTTAAATACATATTAATATTAAATTTATTAGTTCTTAAAAAAAAACATTAAATTTATTAGTTTTCTTTTTAACCAACATTAAATTATAACTTAATGATAATTGATGTGTACTCTCGATTGAGAAATAAGCGGTATTCCAAATGTTGTTGAGCTAAAAAAAATTATGGTATATTGTTAAAAACATAAATGTATAATATAGTTAATTAGTTAAATAATTAAAGGGCAAATTATATATTTATTCCTTTTTTTTGTTTTTTTTTTTAGAATACACAAGTTAATGAACTTTCCACTTGTATCTAATAATTAACTTACATTTATGGATCTATTACATATAAAATTGAATGGTACATCTAACTCTAAACTTTTAATTGAACTACTAATTTAAAAATAAATTAAAAATTTAAAGACTTAATAGACATAAAATTGAAAGTTTAAAGATTTATCTTACCAACATTAATATTCAAGAACCTGATTAATTTAAAATTAAAAATTAAATAGCTTATAAAACACTTTTTAAAGTTAAAAAATATATCCGAGACACAATGGTTCACACTAAAAAATAATTCATTCTCCATCTAAACTTTTCTCGAAAAATAAAAATGAAAAACAAAAAAAAGAAAAAAAGCGTTGGAAAAAGATGGAAACTTCTCAAAAATGGTTGCTTCTCCTTTTCCTGTAAGCCATACCTTAATTACAATTACAACAATCCCGCCAATATTTTCTCTTTTCCATTTATACCCTCAGGATTTCGCTACAATTACCATATTGGACCAACGCATATTTTTCAAATTTATGTCGTGACTCGCTGCGTGTCAAAATAATTGAGAATCGTAAAAAGACGATCGTAATGGCGACTGGCCAGGACAAAGTCGTAAATACCGCGCAACTTTCGGGCATTTAATTGCCCCTCAGGTCGGTTAGCGTAAATATTTTTAATTTTTAAATTGGTTTTTTCAGAAGTTGCCCTAATTGGTGACGTGTAGGGTTTTCTTTCTACCATTCCTTTGCGCGTGTATATAAGGCGCCCTTTCTTCCCATTAAAATCCCCATCGGCTTCTTCGTCACCGCGAAAACAAGAGCCAAAGCTTCAGGATCAGTTTTTTTTTTTTTCCCTCGTATCACGACCACCCACCACTGTAAGGCAAGGATTTCTTCTGTTTTTTCTTGTTAATCTAACTTCATGATCGTTTCTCGTTCCTTGATCGGCCTTGGATTTTCATTTCTTGCTTTGAATTTGTTATTTTTGTTATTGTCGTAATCGTTTATAAGTTGTTCACGATTCTTTCGTCTCGAACGTCTTTGATTTAATGAAATCTTCACGATCGGTTCTCCGGTTGTTGATTTCTGATGGAATTTTGTAAGTTTCTTGCTGCGTCGTTCAGATCTGTAGATTTACTTCTTTACTGCTCGTTTCTTTGGAATATGTTTCTCGATTGCATCTTTCGATGATCGGAATTGAAAATCATGATTGCCGCTTTAGATTGGTATAATATTCATGTAAAGCTTGATGAGAACGATGATTGAATCTTATCTGTGAATTCGATTATATTATTCTTTCCATCTAGTATTATTGAAATCGGTTGAGGATATTTGTCGTATCCGTTTGTGTTTGATTGTTTTTGTTTTTCTTATTTGTGCAAGTGACCTAAAGCTTTCGATTATTTATTTACTAGTTGTAAATGGTAGAGTACATATGTTATAACTTTTAATGGATTTTCATTCATATTTCTAGTCCGTGGATGAAATTTCAAGTTTCAAGATATATTGTCCTTCATTTGGTGCCCGATTGTAAGATTTTTTCTTCGTTTTCTAAAAACTCTATTTATTTAATGTGAACTGCAATTCGATCTTTTCTTTGGTTATAGCTGGAATTGAAGATTACTCCATTGAGATTTCAAAACGAGCTGTCCTATGGTTTAGTTTTCTATATCAAAGGTAGAAACAACATTATTTGTGCCCATTAACTTGCACTTGAATGGTGTTGTTTATGTTTGCTGTAAACGTTTGAGTTCTGATGTTTGCTGATTCTGAAATCATGTTTGTTTTATATTTTTATTTGGCATTGGTTTATTTTTTTTCCTTTTTCCTTAGAAAAATATTTTAATGTTTATGTTCGACTATTGTCATATGATAATCGAACAATTATTTGTTCTTAATCAACAGGAAGTTGGCCATCTGGTCTGCTGTTCTGTAGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGTTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGTTCATAGAAAAGCACGTGATCTTGGTTTCCATTTTATGCGGCCTTTTTCAGCTGCTCAGAGAACGATAGGACCTCTTGAAGATACTACTGCTGATATCTATCTTTTCTAA

mRNA sequence

ATGTCTTTGGAAGATGAGAATGCCTTGGACTTTGAAGCTCAGCCACGGCGGCCAGTGGCTCGCTATTATTTGATGTTGCTTGTGGCTGTGGGATCAGTTTCTCTATGGCGCCCTTTCTTCCCATTAAAATCCCCATCGGCTTCTTCGTCACCGCGAAAACAAGAGCCAAAGCTTCAGGATCAGTTTTTTTTTTTTTCCCTCGTATCACGACCACCCACCACTATCTGTAGATTTACTTCTTTACTGCTCGTTTCTTTGGAATATGTTTCTCGATTGCATCTTTCGATGATCGGAATTGAAAATCATGATTGCCGCTTTAGATTGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGTTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGTTCATAGAAAAGCACGTGATCTTGGTTTCCATTTTATGCGGCCTTTTTCAGCTGCTCAGAGAACGATAGGACCTCTTGAAGATACTACTGCTGATATCTATCTTTTCTAA

Coding sequence (CDS)

ATGTCTTTGGAAGATGAGAATGCCTTGGACTTTGAAGCTCAGCCACGGCGGCCAGTGGCTCGCTATTATTTGATGTTGCTTGTGGCTGTGGGATCAGTTTCTCTATGGCGCCCTTTCTTCCCATTAAAATCCCCATCGGCTTCTTCGTCACCGCGAAAACAAGAGCCAAAGCTTCAGGATCAGTTTTTTTTTTTTTCCCTCGTATCACGACCACCCACCACTATCTGTAGATTTACTTCTTTACTGCTCGTTTCTTTGGAATATGTTTCTCGATTGCATCTTTCGATGATCGGAATTGAAAATCATGATTGCCGCTTTAGATTGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGTTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGTTCATAGAAAAGCACGTGATCTTGGTTTCCATTTTATGCGGCCTTTTTCAGCTGCTCAGAGAACGATAGGACCTCTTGAAGATACTACTGCTGATATCTATCTTTTCTAA

Protein sequence

MSLEDENALDFEAQPRRPVARYYLMLLVAVGSVSLWRPFFPLKSPSASSSPRKQEPKLQDQFFFFSLVSRPPTTICRFTSLLLVSLEYVSRLHLSMIGIENHDCRFRLFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGVHRKARDLGFHFMRPFSAAQRTIGPLEDTTADIYLF
Homology
BLAST of Lag0004837 vs. NCBI nr
Match: KAA0064818.1 (ATP synthase subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-35
Identity = 76/89 (85.39%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 109 FKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGVHRKARD 168
           FKVEGV FETPFMSERASLFLSSIGLLGEYCPTSRKK SCAETIGCMHLELLGVHRKAR 
Sbjct: 10  FKVEGVTFETPFMSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGVHRKARG 69

Query: 169 LGFHFMRPFSAAQRTIGPLEDTTADIYLF 198
           LGFHFMR F AAQR  G  EDT    YLF
Sbjct: 70  LGFHFMRSFPAAQRASGLFEDTATSTYLF 98

BLAST of Lag0004837 vs. NCBI nr
Match: KAG7020201.1 (Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-19
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 108 LFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGVHRKA- 167
           +FKVE VKFETPFMSERA+LFLSSIGLLGEYCPTSRKK SCAETIGCMHLEL G H  + 
Sbjct: 3   IFKVESVKFETPFMSERATLFLSSIGLLGEYCPTSRKKYSCAETIGCMHLELPGGHSNSP 62

Query: 168 RDLG 171
           R++G
Sbjct: 63  RNIG 66

BLAST of Lag0004837 vs. NCBI nr
Match: KAF5450803.1 (hypothetical protein F2P56_031124, partial [Juglans regia])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-13
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 67  LVSRPPTTICRFTSLLLVSLEYVSRLHLSMIGIENHDCRFRLFKVEGVKFETPFMSERAS 126
           L+++P      F + L +SL +     L+++         +L KVEGVKFE  FMSERA+
Sbjct: 6   LLAKPRDIFVSFLASLSLSLSHHIWRKLAVLS------ALQLVKVEGVKFEASFMSERAT 65

Query: 127 LFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGVHRKARDLGFHFMRPF 178
           LFLSSIGLLG YCP SRKKN   A  +GCMHL L+  +R A  LG  F+ PF
Sbjct: 66  LFLSSIGLLGGYCPKSRKKNRHSAAKVGCMHLGLVEGYR-AHCLGCQFICPF 110

BLAST of Lag0004837 vs. NCBI nr
Match: KAG6585281.1 (Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-12
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0

Query: 121 MSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGVH 164
           MSERA+LFLSSIGLLGEYCPTSRKK SCAETIGCMHLEL G H
Sbjct: 1   MSERATLFLSSIGLLGEYCPTSRKKYSCAETIGCMHLELPGGH 43

BLAST of Lag0004837 vs. NCBI nr
Match: GAY41695.1 (hypothetical protein CUMW_061410 [Citrus unshiu])

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-10
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 110 KVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGVHRKARD 169
           KVE VK E  FMSERASLFLSSIGLLGEY PTSRKK+   +  +GCMHL     +    D
Sbjct: 20  KVESVKSEAFFMSERASLFLSSIGLLGEYFPTSRKKSRHSSHKVGCMHLGTSEAYTTRID 79

Query: 170 LGFHFMRPFSAAQRTI 185
               FMRPF  A+  +
Sbjct: 80  C--LFMRPFPIARNLL 93

BLAST of Lag0004837 vs. ExPASy TrEMBL
Match: A0A5A7VB37 (ATP synthase subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001260 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.3e-35
Identity = 76/89 (85.39%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 109 FKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGVHRKARD 168
           FKVEGV FETPFMSERASLFLSSIGLLGEYCPTSRKK SCAETIGCMHLELLGVHRKAR 
Sbjct: 10  FKVEGVTFETPFMSERASLFLSSIGLLGEYCPTSRKKISCAETIGCMHLELLGVHRKARG 69

Query: 169 LGFHFMRPFSAAQRTIGPLEDTTADIYLF 198
           LGFHFMR F AAQR  G  EDT    YLF
Sbjct: 70  LGFHFMRSFPAAQRASGLFEDTATSTYLF 98

BLAST of Lag0004837 vs. ExPASy TrEMBL
Match: A0A2H5NPS9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_061410 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.7e-10
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 110 KVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGVHRKARD 169
           KVE VK E  FMSERASLFLSSIGLLGEY PTSRKK+   +  +GCMHL     +    D
Sbjct: 20  KVESVKSEAFFMSERASLFLSSIGLLGEYFPTSRKKSRHSSHKVGCMHLGTSEAYTTRID 79

Query: 170 LGFHFMRPFSAAQRTI 185
               FMRPF  A+  +
Sbjct: 80  C--LFMRPFPIARNLL 93

BLAST of Lag0004837 vs. ExPASy TrEMBL
Match: A0A5A7Q0T0 (Conserved peptide upstream open reading frame 19 OS=Striga asiatica OX=4170 GN=STAS_15241 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.8e-10
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 110 KVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGVHRK-ARD 169
           KVE  K ET FMSE+A+  LS+IGLLGEYCP+ RK       +GCMHLEL   HRK  +D
Sbjct: 15  KVESPKLETFFMSEQATFSLSTIGLLGEYCPSRRKDRYPCFQLGCMHLELSQGHRKLCQD 74

Query: 170 LGFHFMRPFSAAQRTIGPLEDT 191
             F +  P  AA     P E+T
Sbjct: 75  CQFMWAAP--AAWNNYNPEEET 94

BLAST of Lag0004837 vs. ExPASy TrEMBL
Match: A0A5D2L037 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G254800v1 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 121 MSERASLFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGVHRKARDLGFHFMRPFSA 180
           MSERASLFLSSIGLLGEYCPTSRKKN S    I CMH+E      +   LGF FM+   +
Sbjct: 1   MSERASLFLSSIGLLGEYCPTSRKKNRSSYSEISCMHIEA----NQRHSLGFRFMQHLPS 60

Query: 181 AQRTIG 186
           A+R  G
Sbjct: 61  ARRQPG 62

BLAST of Lag0004837 vs. ExPASy TrEMBL
Match: A0A443P484 (ATP synthase subunit alpha, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01444800 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.2e-10
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 107 RLFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLE 159
           RL KVEGVKFE  FMS  ASL+L SIGLLGEYCPTSRKK   +    CMHLE
Sbjct: 203 RLSKVEGVKFEASFMSVWASLYLGSIGLLGEYCPTSRKKYRHSSERDCMHLE 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0064818.18.9e-3585.39ATP synthase subunit alpha [Cucumis melo var. makuwa][more]
KAG7020201.11.1e-1981.25Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subs... [more]
KAF5450803.11.9e-1348.21hypothetical protein F2P56_031124, partial [Juglans regia][more]
KAG6585281.12.8e-1290.70Eukaryotic translation initiation factor 5, partial [Cucurbita argyrosperma subs... [more]
GAY41695.17.6e-1056.58hypothetical protein CUMW_061410 [Citrus unshiu][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VB374.3e-3585.39ATP synthase subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A2H5NPS93.7e-1056.58Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_061410 PE=4 SV=1[more]
A0A5A7Q0T04.8e-1051.22Conserved peptide upstream open reading frame 19 OS=Striga asiatica OX=4170 GN=S... [more]
A0A5D2L0376.2e-1060.61Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G254800v1 P... [more]
A0A443P4848.2e-1071.15ATP synthase subunit alpha, chloroplastic OS=Cinnamomum micranthum f. kanehirae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004837.1Lag0004837.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044271 cellular nitrogen compound biosynthetic process
biological_process GO:1901566 organonitrogen compound biosynthetic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0000166 nucleotide binding