Lag0004814 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004814
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionChitin-binding type-2 domain-containing protein
Locationchr6: 7357984 .. 7358910 (-)
RNA-Seq ExpressionLag0004814
SyntenyLag0004814
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCGAGCCTCGTTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCGGATACTTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAATGGTCGGCCTTAGCCTTGGCATGAGGACGAGCACTTTCCCTGCATGGCTTGAGAAGTTTGAGGGAAGCTTGGGGAGGCGTTGGGATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGTGCCTCTCTTCAAACGTCGTGGTCATCCCATGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTGGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGTACACTCTTATGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGAACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAATATGTATGCTCAAACTGCCTTCTATCATATTTCCACACAATTTTGATGGCATATCAAGCAACAAAGTATTTTAA

mRNA sequence

ATGAGGTCGAGCCTCGTTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCGGATACTTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAATGGTCGGCCTTAGCCTTGGCATGAGGACGAGCACTTTCCCTGCATGGCTTGAGAAGTTTGAGGGAAGCTTGGGGAGGCGTTGGGATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGTGCCTCTCTTCAAACGTCGTGGTCATCCCATGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTGGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGTACACTCTTATGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGAACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAATATGTATGCTCAAACTGCCTTCTATCATATTTCCACACAATTTTGATGGCATATCAAGCAACAAAGTATTTTAA

Coding sequence (CDS)

ATGAGGTCGAGCCTCGTTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCGGATACTTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAATGGTCGGCCTTAGCCTTGGCATGAGGACGAGCACTTTCCCTGCATGGCTTGAGAAGTTTGAGGGAAGCTTGGGGAGGCGTTGGGATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGTGCCTCTCTTCAAACGTCGTGGTCATCCCATGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTGGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGTACACTCTTATGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGAACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAATATGTATGCTCAAACTGCCTTCTATCATATTTCCACACAATTTTGATGGCATATCAAGCAACAAAGTATTTTAA

Protein sequence

MRSSLVSPSLVCLPHSWTHVRILGLRSDYRTQSSPIPCLMVGLSLGMRTSTFPAWLEKFEGSLGRRWDFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPVPLFKRRGHPMGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPGNFPSLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRTLFWGKSLGRPGKFPSLSSSIVVIPGVRTLFWEKAWGGLGSSRASLQASSSSQGCVHSSGEICMLKLPSIIFPHNFDGISSNKVF
Homology
BLAST of Lag0004814 vs. NCBI nr
Match: XP_021913216.1 (collagen alpha-1(I) chain-like [Zootermopsis nevadensis])

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-12
Identity = 76/181 (41.99%), Postives = 81/181 (44.75%), Query Frame = 0

Query: 62  SLGRRWDFP-GPLFKRRGHPRGAYTLLGKSLGRPRNFP-GPLFKRRGHPRGAYTLLGKSL 121
           S G    FP GP     G  +G Y   G S GRP  FP GP     G P+G Y   G S 
Sbjct: 80  SAGAPGGFPSGP----SGGLQGGYPSGGPSTGRPGGFPSGP----SGGPQGGYPSGGPST 139

Query: 122 GRPRNFPVPLFKRRGHPMGAYTLLGKSLGRPRNFP-GPLFKRRGHPRGAYTLLGKSLGRP 181
           GRP  FP       G P G Y   G S GRP  FP GP     G P+G Y   G S G P
Sbjct: 140 GRPGGFPSG--PAGGGPPGGYPSGGPSTGRPGGFPSGP----SGGPQGGYPSGGPSAGAP 199

Query: 182 GNFPSLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRTLFWGKSLGRPGKFP 240
           G FPS  S  +   G  +   G S GRPG FPS  S     P       G S GRPG FP
Sbjct: 200 GGFPSGPSGGLQ-GGYPS--GGPSTGRPGGFPSGPSGG---PQGGYPSGGPSTGRPGGFP 240

BLAST of Lag0004814 vs. NCBI nr
Match: XP_015472393.2 (basic proline-rich protein-like, partial [Parus major])

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-09
Identity = 63/180 (35.00%), Postives = 72/180 (40.00%), Query Frame = 0

Query: 70  PGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPVPL 129
           PGP     G P  A  L G++   PR  PGPL K  G P       G   G P   P PL
Sbjct: 114 PGPPGTPPGPPGEAPGLPGEAPRPPRTAPGPLGKAPGPP-------GTPPGPPGTPPGPL 173

Query: 130 FKRRGHPMGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPGNFPSLSSSCI 189
            K  G P      LGK+LG PR  PGPL K  G P     LLG   G PG  P       
Sbjct: 174 GKAPGPPGTPPGPLGKALGPPRTAPGPLGKAPGPPGTPPGLLGTPPGPPGTAPGPLGMGT 233

Query: 190 VIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRTLFWGKSLGRPGKFPSLSSSIVVIPG 249
              G+ T   G + G  G  P L        G      GK+ G PG+ P    ++   PG
Sbjct: 234 GPLGMGTGPLGTAPGPLGTPPGLPGEAPGPLGTAPGPPGKTPGPPGEAPGPLGTVTTPPG 286

BLAST of Lag0004814 vs. NCBI nr
Match: KAG8597368.1 (hypothetical protein GDO81_002266 [Engystomops pustulosus])

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-08
Identity = 52/153 (33.99%), Postives = 63/153 (41.18%), Query Frame = 0

Query: 63  LGRRWDFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRP 122
           + R   F GP   R GH        G S+ R R+FPGP   R  H        G S+ R 
Sbjct: 1   MSRHGHFLGPSMSRHGH------FPGPSMSRHRHFPGPSMSRHRH------FPGPSMSRH 60

Query: 123 RNFPVPLFKRRGHPMGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPGNFP 182
           R+FP P   R GH        G S+ R R+F GP   R GH       LG S+ R G+FP
Sbjct: 61  RHFPGPNMSRHGH------FPGPSMSRHRHFLGPSMSRHGH------FLGPSMSRHGHFP 112

Query: 183 SLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSS 216
                            G S+ R G+FP  S S
Sbjct: 121 -----------------GPSMSRHGHFPGPSMS 112

BLAST of Lag0004814 vs. NCBI nr
Match: KDR22633.1 (hypothetical protein L798_12765, partial [Zootermopsis nevadensis])

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-07
Identity = 55/135 (40.74%), Postives = 57/135 (42.22%), Query Frame = 0

Query: 106 GHPRGAYTLLGKSLGRPRNFPVPLFKRRGHPMGAYTLLGKSLGRPRNF-PGPLFKRRGHP 165
           G P+G Y   G S GRP  FP       G P G Y   G S G P  F  GP     G P
Sbjct: 1   GGPQGGYPSGGPSTGRPGGFP---SGPSGGPQGGYPSGGPSAGTPGGFTSGP----SGGP 60

Query: 166 RGAYTLLGKSLGRPGNFPSLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRT 225
           +G Y   G S GRPG FPS  S     P       G S G PG F S  S     P    
Sbjct: 61  QGGYPSGGPSTGRPGGFPSGPSGG---PQGGYPSGGPSAGTPGGFTSGPSGG---PQGGY 120

Query: 226 LFWGKSLGRPGKFPS 240
              G S GRPG FPS
Sbjct: 121 PSGGPSTGRPGGFPS 122

BLAST of Lag0004814 vs. NCBI nr
Match: XP_030053253.1 (corneodesmosin [Microcaecilia unicolor])

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-05
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 0

Query: 166 GAYTLLGKSLGRPGNFPSLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRTL 225
           G+  + G S    G  PS SS  I +PG  ++++G S G  G  PS SS  I +PG  ++
Sbjct: 165 GSSVIYGGSSSSQGGRPSGSSQVIQVPGGSSVIYGGSSGSQGGRPSGSSQVIQVPGGSSV 224

Query: 226 FWGKSLGRPGKFPSLSSSIVVIPGVRTLFWEKAWGGLGSSRASLQASSSSQGCVHSSG 284
            +G S G  G  PS SS ++ + G  +     +    G S + +   S S   VH SG
Sbjct: 225 IYGGSSGSQGGRPSGSSQVIQVVGGSSGGSSGSSVIYGGSGSQVGIPSGSSQVVHVSG 282

BLAST of Lag0004814 vs. ExPASy TrEMBL
Match: A0A067RI20 (Chitin-binding type-2 domain-containing protein (Fragment) OS=Zootermopsis nevadensis OX=136037 GN=L798_12765 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 55/135 (40.74%), Postives = 57/135 (42.22%), Query Frame = 0

Query: 106 GHPRGAYTLLGKSLGRPRNFPVPLFKRRGHPMGAYTLLGKSLGRPRNF-PGPLFKRRGHP 165
           G P+G Y   G S GRP  FP       G P G Y   G S G P  F  GP     G P
Sbjct: 1   GGPQGGYPSGGPSTGRPGGFP---SGPSGGPQGGYPSGGPSAGTPGGFTSGP----SGGP 60

Query: 166 RGAYTLLGKSLGRPGNFPSLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRT 225
           +G Y   G S GRPG FPS  S     P       G S G PG F S  S     P    
Sbjct: 61  QGGYPSGGPSTGRPGGFPSGPSGG---PQGGYPSGGPSAGTPGGFTSGPSGG---PQGGY 120

Query: 226 LFWGKSLGRPGKFPS 240
              G S GRPG FPS
Sbjct: 121 PSGGPSTGRPGGFPS 122

BLAST of Lag0004814 vs. ExPASy TrEMBL
Match: A0A6P7XL68 (corneodesmosin OS=Microcaecilia unicolor OX=1415580 GN=CDSN PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-05
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 0

Query: 166 GAYTLLGKSLGRPGNFPSLSSSCIVIPGVRTLLWGKSLGRPGNFPSLSSSCIVIPGVRTL 225
           G+  + G S    G  PS SS  I +PG  ++++G S G  G  PS SS  I +PG  ++
Sbjct: 165 GSSVIYGGSSSSQGGRPSGSSQVIQVPGGSSVIYGGSSGSQGGRPSGSSQVIQVPGGSSV 224

Query: 226 FWGKSLGRPGKFPSLSSSIVVIPGVRTLFWEKAWGGLGSSRASLQASSSSQGCVHSSG 284
            +G S G  G  PS SS ++ + G  +     +    G S + +   S S   VH SG
Sbjct: 225 IYGGSSGSQGGRPSGSSQVIQVVGGSSGGSSGSSVIYGGSGSQVGIPSGSSQVVHVSG 282

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021913216.11.5e-1241.99collagen alpha-1(I) chain-like [Zootermopsis nevadensis][more]
XP_015472393.27.7e-0935.00basic proline-rich protein-like, partial [Parus major][more]
KAG8597368.15.0e-0833.99hypothetical protein GDO81_002266 [Engystomops pustulosus][more]
KDR22633.15.5e-0740.74hypothetical protein L798_12765, partial [Zootermopsis nevadensis][more]
XP_030053253.15.1e-0533.05corneodesmosin [Microcaecilia unicolor][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A067RI202.7e-0740.74Chitin-binding type-2 domain-containing protein (Fragment) OS=Zootermopsis nevad... [more]
A0A6P7XL682.5e-0533.05corneodesmosin OS=Microcaecilia unicolor OX=1415580 GN=CDSN PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004814.1Lag0004814.1mRNA