Lag0004727 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004727
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nuclear transcription factor Y subunit C
Location	chr6: 6443750 .. 6444172 (-)
RNA-Seq Expression	Lag0004727
Synteny	Lag0004727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGGAATCCGGAGAGGTCATCCGGCCGCAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAACTCAGAAGCACTGTTTATCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAGTCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGACGTCGGATGCTCCGTCGAAGGACGAGAATCGCCCTCGCACTGTCGTTGATAAAGGGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG

mRNA sequence

ATGGCGGAAGAGGAATCCGGAGAGGTCATCCGGCCGCAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAACTCAGAAGCACTGTTTATCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAGTCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGACGTCGGATGCTCCGTCGAAGGACGAGAATCGCCCTCGCACTGTCGTTGATAAAGGGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG

Coding sequence (CDS)

ATGGCGGAAGAGGAATCCGGAGAGGTCATCCGGCCGCAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAACTCAGAAGCACTGTTTATCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAGTCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGACGTCGGATGCTCCGTCGAAGGACGAGAATCGCCCTCGCACTGTCGTTGATAAAGGGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG

Protein sequence

MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

Homology

[Close]

BLAST of Lag0004727 vs. NCBI nr
Match: XP_038884228.1 (NCT transcriptional regulatory complex subunit A [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 3.7e-59
Identity = 124/140 (88.57%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAV 60
           MAEEESG+ IRP+FPTGRVKKIMK+DKD+ KVNSEALF+VSCATELFLKLLAEKSAEVA 
Sbjct: 1   MAEEESGDAIRPEFPTGRVKKIMKLDKDIEKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 120
           EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLPPQ SDAP+KDENR RTVVDK  PEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRTRTVVDKVVPEGTR 120

Query: 121 RIDDFFRRSAKTTSAETNES 141
           RIDDFFRR AKTTSAE NES
Sbjct: 121 RIDDFFRRPAKTTSAENNES 140

[Close]

BLAST of Lag0004727 vs. NCBI nr
Match: KAA0064731.1 (dr1-associated corepressor [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAV 60
           M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALFIVSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 120
           EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDAP+KDENR R VVDK  P GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRSAKTTSAETNES 141
           RIDDFFRR  KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lag0004727 vs. NCBI nr
Match: XP_008445504.1 (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAV 60
           M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALF+VSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 120
           EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDA +KDENR R VVDK  P GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRSAKTTSAETNES 141
           RIDDFFRR  KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lag0004727 vs. NCBI nr
Match: XP_022132171.1 (nuclear transcription factor Y subunit C-1 [Momordica charantia])

HSP 1 Score: 227.6 bits (579), Expect = 6.5e-56
Identity = 118/140 (84.29%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAV 60
           MAEEESGE IRP+ PTGRVKKIMK+DKDV KVNSEALF+VSCAT+LFLKLLAEKSAEVA 
Sbjct: 1   MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVAT 60

Query: 61  EKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 120
           EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLPPQ SDAP+K+ENR RT  DK  PEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAKNENRTRTAADKAAPEGTR 120

Query: 121 RIDDFFRRSAKTTSAETNES 141
           RIDDFFR+ AKTTS E NES
Sbjct: 121 RIDDFFRKPAKTTSDENNES 140

[Close]

BLAST of Lag0004727 vs. NCBI nr
Match: XP_022997291.1 (DNA polymerase epsilon subunit C [Cucurbita maxima])

HSP 1 Score: 227.3 bits (578), Expect = 8.5e-56
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAV 60
           MAEEE GE IRP+FP GR+KKIMK+DKD+GKVNSEALF+VSCATELFL+LLAEKSAEVA 
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLP Q SDAP+KDENR R VVDK  PEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRSAKTTSAETNES 141
           RIDDFFRR  KT SAETNE+
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Lag0004727 vs. ExPASy Swiss-Prot
Match: A0JPP1 (Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-07
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 13  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHI 72
           +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H+
Sbjct: 11  RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70

Query: 73  RVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 121
           +  ++  +   DFL D +   P        D     T  DKGP  G +
Sbjct: 71  KQCIELEQQF-DFLKDLVASVPDMQG----DGEDNHTDGDKGPRRGRK 113

[Close]

BLAST of Lag0004727 vs. ExPASy Swiss-Prot
Match: Q9D6N5 (Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 35/108 (32.41%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 13  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHI 72
           +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H+
Sbjct: 11  RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70

Query: 73  RVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 121
           +  ++  +   DFL D +   P        D        DKGP  G +
Sbjct: 71  KQCIELEQQF-DFLKDLVASVPDMQG----DGEDNHVDGDKGPRRGRK 113

[Close]

BLAST of Lag0004727 vs. ExPASy Swiss-Prot
Match: Q2YDP3 (Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 35/108 (32.41%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 13  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHI 72
           +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H+
Sbjct: 11  RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70

Query: 73  RVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVDKGPPEGTR 121
           +  ++  +   DFL D +   P        D        DKGP  G +
Sbjct: 71  KQCIELEQQF-DFLKDLVASVPDMQG----DGEDNHMDGDKGPRRGRK 113

[Close]

BLAST of Lag0004727 vs. ExPASy Swiss-Prot
Match: Q14919 (Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 13 QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHI 72
          +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H+
Sbjct: 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70

Query: 73 RVAVKRHRSISDFLLDSLPLPP 95
          +  ++  +   DFL D +   P
Sbjct: 71 KQCIELEQQF-DFLKDLVASVP 91

[Close]

BLAST of Lag0004727 vs. ExPASy Swiss-Prot
Match: B0XTT5 (NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=nctA PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 10  IRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKL 69
           ++ +FP  R+K+IM+ D+DVGKV       VS A ELF+  L  K+A+ A ++  K V  
Sbjct: 130 VKTKFPVARIKRIMQADEDVGKVAQVTPIAVSKALELFMISLVTKAAKEARDRNSKRVTA 189

Query: 70  EHIRVAVKRHRSISDFLLDSL-PLPPQTSDAPSKDEN 106
            H++ AV +   + DFL D +  +P Q +     D++
Sbjct: 190 THLKQAVVKD-EVLDFLADIIAKVPDQPAGGRKHDDD 225

The following BLAST results are available for this feature:

BLAST of Lag0004727 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884228.1	3.7e-59	88.57	NCT transcriptional regulatory complex subunit A [Benincasa hispida]	[more]
KAA0064731.1	1.2e-57	87.86	dr1-associated corepressor [Cucumis melo var. makuwa]	[more]
XP_008445504.1	1.7e-56	86.43	PREDICTED: dr1-associated corepressor [Cucumis melo]	[more]
XP_022132171.1	6.5e-56	84.29	nuclear transcription factor Y subunit C-1 [Momordica charantia]	[more]
XP_022997291.1	8.5e-56	83.57	DNA polymerase epsilon subunit C [Cucurbita maxima]	[more]

BLAST of Lag0004727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0JPP1	4.4e-07	33.33	Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1	[more]
Q9D6N5	1.7e-06	32.41	Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3	[more]
Q2YDP3	2.2e-06	32.41	Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1	[more]
Q14919	2.9e-06	35.37	Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3	[more]
B0XTT5	2.9e-06	35.05	NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..76 e-value: 1.4E-19 score: 70.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..91 e-value: 6.0E-23 score: 83.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 10..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..130
None	No IPR available	PANTHER	PTHR10252:SF95	NUCLEAR FACTOR Y, SUBUNIT C13	coord: 2..129
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004727.1	Lag0004727.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity