Lag0004647 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004647
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr6: 5753586 .. 5755509 (+)
RNA-Seq Expression	Lag0004647
Synteny	Lag0004647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACAGAAGCTTCATCCTCCTCTTCGCTTTCTTCTTCTACTGAAATCACCCCACCGATTATCTTTCCATCTACACCAATCACCACTCCGATTGTCTCTCCGATTGCCCAGACCCCCAAACAACCAACATCTCAACCGCGCCCCTTTCTCCCCCAAAATCGCCCTAATGTTGCTCCAACTCAACCCACGTTTAATCCATATCAACCACAACCGTTTTATCCAACTTCAGGCGTCTATCAACCTTTTTACCCCTCTTCTTTTCCTCGCCCTCAAGCTCCCCTGTTTTTTCCACCTCAAGTTAACCCATCCCAACCTTCGACTCCCTTTGCCCCGAATCCCTATCCCACTTTACCACAGCCATTATCTGTCAAACTCACGGATACAAATTTTTTTGCTATGGAAGAACCAGCTCTTGAATGCGGTATTGGCTAACGGACTTCCTGGTTTACTTGATGGATCTATCCCAGCTCCCTCCAAATTTCTTGACGATCAATGCTCTCAGCCGAATCCTGAATTTCTGACTTGGGAAAGGTACAACTGTTTTATTATGTGTTGGATGTATTCCTCGCTTTCTGAAGAAAAAATGGGTGAAATAGTGAACTAAGACACTGCCTCTGAAATATGGAACTCGTTGAAACGTTCTTATGATTCTAAGACTACGACTAGGATAATGGGTCTCAAAACTCAGCTTCAACGGATTAAGAAAGACGGTCTCTCTGTTAGTCAGTATTTGTCCCAAATTAAAGAGATTACTGATAAATTCTCAGCTATAGGAGAGCCCATTTCTTATCGTGACCACTTAGCTCATATTTTAGACGGTCTTGGAAGCGAATATAATGCGTTTGTCACTTCAATCCAGAATCGTTCTGATAACCCTGCTCTAGAGGAGGTTCGAAGTCTTCTCTTGGCTTATGAGGCGAGATTAGAAAAACAATCTAGTGTTGATCAACTTAGCTTAGCTCAAGCAAATTTTGCTAACCTTAATGTTCACAGTAACAGTCGCCGCTCTGTCTCTCGTAGTCCTACAAATTTTTCTCCGGCTGGTTTTGTAAGACCTCCCTTCAATCCATTAACTCCACACTCCTCTATTCCTTCACCAACTTTTTCTCCTAGTCTCCTTGGTAAACCAGAATCACAACCATTACAAAAATGACCCTCCACAGTGTCAAATTTGTGGAAAGTTTGGTCACACCGCCCTGATTTGTCATCACCGGACTAACTTAGCTTACCAAACACCCCCTCCCCAAGCTATGTTAACCACTGCTGCACATTCTTTCTCTTCACCTGATTCGGTCTCCACAACTTCCATGAGTTCTTATCACCCCGATGAGAATTGGTTTCTTGACTCCGGTGCTACTCACCTTTTCTCTTTAATATTTGTTGGGCCTTTTCTCCAGTTTATTTACTTCTGCTATTGTTATTTTTGCCCATATCAGTGGCTTACGCGTGGCTTTGCTCTTTCACTATTTAGGTTGCCTTTCTTGGCTGTATTATTTACTGACTTTTATTATCGATATCAAAAACATCCCTTTGTCTTCTTCCTCCTTTTGAGTTCTAAAGACAAAAGTTGTTCATAAAATGCTACAGATGGATCCCAAATCAAGGAGAATGTACTAATATAGAAGTCCCTTTATGATTCCAAGATAGAGAGTTTTGATGATCTTATGAGGCATTTGAAATAGCTTTCTTTTTAAACGGAGGAAGTTAGAGCCAACTAAGCTAATAACATGTAGCTTAAATTAGTAGGTCTAGGTACACATATATTCTAACAATAATTTTCCTATAAACCTATAGGTCTCATCGAAAAGCCACTTTAGTTGATGTTTTCCTCAATGTGCTTGTCGACCGGTACTGTCCTGCCCTCCATATTAATCTAACCATCACAATTGAAGGCTCAGTAACCTTCGAGCGAGAGGTGTAA

mRNA sequence

ATGACAACAGAAGCTTCATCCTCCTCTTCGCTTTCTTCTTCTACTGAAATCACCCCACCGATTATCTTTCCATCTACACCAATCACCACTCCGATTGTCTCTCCGATTGCCCAGACCCCCAAACAACCAACATCTCAACCGCGCCCCTTTCTCCCCCAAAATCGCCCTAATGTTGCTCCAACTCAACCCACGTTTAATCCATATCAACCACAACCGTTTTATCCAACTTCAGGCGTCTATCAACCTTTTTACCCCTCTTCTTTTCCTCGCCCTCAAGCTCCCCTGTTTTTTCCACCTCAAGTTAACCCATCCCAACCTTCGACTCCCTTTGCCCCGAATCCCTATCCCACTTTACCACAGCCATTATCTGTCAAACTCACGGATACAAATTTTTTTGCTATGGAAGAACCAGCTCTTGAATGCGCTCCCTCCAAATTTCTTGACGATCAATGCTCTCAGCCGAATCCTGAATTTCTGACTTGGGAAAGGATAATGGGTCTCAAAACTCAGCTTCAACGGATTAAGAAAGACGGTCTCTCTGTTAGTCAGTATTTGTCCCAAATTAAAGAGATTACTGATAAATTCTCAGCTATAGGAGAGCCCATTTCTTATCGTGACCACTTAGCTCATATTTTAGACGGTCTTGGAAGCGAATATAATGCGTTTGTCACTTCAATCCAGAATCGTTCTGATAACCCTGCTCTAGAGGAGGTTCGAAGTCTTCTCTTGGCTTATGAGGCGAGATTAGAAAAACAATCTAGTGTTGATCAACTTAGCTTAGCTCAAGCAAATTTTGCTAACCTTAATGTTCACAGTAACAGTCGCCGCTCTGTCTCTCGTAGTCCTACAAATTTTTCTCCGGCTGGTTTTAATCACAACCATTACAAAAATGACCCTCCACAGTGTCAAATTTGTGGAAAGTTTGGTCACACCGCCCTGATTTGTCATCACCGGACTAACTTAGCTTACCAAACACCCCCTCCCCAAGCTATGTTAACCACTGCTGCACATTCTTTCTCTTCACCTGATTCGGTCTCCACAACTTCCATGAGTTCTTATCACCCCGATGAGAATTGGTCTCATCGAAAAGCCACTTTAGTTGATGTTTTCCTCAATGTGCTTGTCGACCGGTACTGTCCTGCCCTCCATATTAATCTAACCATCACAATTGAAGGCTCAGTAACCTTCGAGCGAGAGGTGTAA

Coding sequence (CDS)

ATGACAACAGAAGCTTCATCCTCCTCTTCGCTTTCTTCTTCTACTGAAATCACCCCACCGATTATCTTTCCATCTACACCAATCACCACTCCGATTGTCTCTCCGATTGCCCAGACCCCCAAACAACCAACATCTCAACCGCGCCCCTTTCTCCCCCAAAATCGCCCTAATGTTGCTCCAACTCAACCCACGTTTAATCCATATCAACCACAACCGTTTTATCCAACTTCAGGCGTCTATCAACCTTTTTACCCCTCTTCTTTTCCTCGCCCTCAAGCTCCCCTGTTTTTTCCACCTCAAGTTAACCCATCCCAACCTTCGACTCCCTTTGCCCCGAATCCCTATCCCACTTTACCACAGCCATTATCTGTCAAACTCACGGATACAAATTTTTTTGCTATGGAAGAACCAGCTCTTGAATGCGCTCCCTCCAAATTTCTTGACGATCAATGCTCTCAGCCGAATCCTGAATTTCTGACTTGGGAAAGGATAATGGGTCTCAAAACTCAGCTTCAACGGATTAAGAAAGACGGTCTCTCTGTTAGTCAGTATTTGTCCCAAATTAAAGAGATTACTGATAAATTCTCAGCTATAGGAGAGCCCATTTCTTATCGTGACCACTTAGCTCATATTTTAGACGGTCTTGGAAGCGAATATAATGCGTTTGTCACTTCAATCCAGAATCGTTCTGATAACCCTGCTCTAGAGGAGGTTCGAAGTCTTCTCTTGGCTTATGAGGCGAGATTAGAAAAACAATCTAGTGTTGATCAACTTAGCTTAGCTCAAGCAAATTTTGCTAACCTTAATGTTCACAGTAACAGTCGCCGCTCTGTCTCTCGTAGTCCTACAAATTTTTCTCCGGCTGGTTTTAATCACAACCATTACAAAAATGACCCTCCACAGTGTCAAATTTGTGGAAAGTTTGGTCACACCGCCCTGATTTGTCATCACCGGACTAACTTAGCTTACCAAACACCCCCTCCCCAAGCTATGTTAACCACTGCTGCACATTCTTTCTCTTCACCTGATTCGGTCTCCACAACTTCCATGAGTTCTTATCACCCCGATGAGAATTGGTCTCATCGAAAAGCCACTTTAGTTGATGTTTTCCTCAATGTGCTTGTCGACCGGTACTGTCCTGCCCTCCATATTAATCTAACCATCACAATTGAAGGCTCAGTAACCTTCGAGCGAGAGGTGTAA

Protein sequence

MTTEASSSSSLSSSTEITPPIIFPSTPITTPIVSPIAQTPKQPTSQPRPFLPQNRPNVAPTQPTFNPYQPQPFYPTSGVYQPFYPSSFPRPQAPLFFPPQVNPSQPSTPFAPNPYPTLPQPLSVKLTDTNFFAMEEPALECAPSKFLDDQCSQPNPEFLTWERIMGLKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNSRRSVSRSPTNFSPAGFNHNHYKNDPPQCQICGKFGHTALICHHRTNLAYQTPPPQAMLTTAAHSFSSPDSVSTTSMSSYHPDENWSHRKATLVDVFLNVLVDRYCPALHINLTITIEGSVTFEREV

Homology

[Close]

BLAST of Lag0004647 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 250.0 bits (637), Expect = 3.5e-62
Identity = 156/356 (43.82%), Postives = 192/356 (53.93%), Query Frame = 0


Query: 96  FFPPQVN-PSQPSTPFAPNPYPTLPQPLSVKLTDTNFFAMEEPALECA------------ 155
           F PP  N  +QP  PF+ NP+PTLPQPL+VKL D NF   +   L               
Sbjct: 3   FPPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGT 62

Query: 156 ---PSKFLDDQCSQPNPEFLTWE------------------------------------- 215
              P +FLD    QPNP +  WE                                     
Sbjct: 63  IMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTR 122

Query: 216 --------RIMGLKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDG 275
                   RIMGLKT+LQ ++KDG SVSQYL++IKEI DKF+A+GEP+SYRDHLAH+LDG
Sbjct: 123 VYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDG 182

Query: 276 LGSEYNAFVTSIQNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNS 335
           LGSEYNAFVTSI NR+D+P+LE+VRSLLLAYEARL+KQ++VDQL++AQAN  NL++  NS
Sbjct: 183 LGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNS 242

Query: 336 RRSVSRSPTNFSPAGFNHNHYKND------------------------PP-------QCQ 360
           +    R P  FS      NHYK+                         PP       QCQ
Sbjct: 243 K----RPPPKFS----FPNHYKHSFPNSPISAAQSQSILGKPQSVHKWPPKPSSSKIQCQ 302

[Close]

BLAST of Lag0004647 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 4.1e-39
Identity = 101/197 (51.27%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 165 MGLKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVT 224
           M LK +LQ+I+KD LS+SQYLSQIK++ DKFS +GE ISYRDHL HILDGLGSEYNAFVT
Sbjct: 1   MSLKARLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVT 60

Query: 225 SIQNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNSRRSVSR---- 284
           SIQN  DN ++E+V SLLL+YEA+LEKQ+++D L++AQA  + L+   NS+R+  R    
Sbjct: 61  SIQNHVDNLSVEDVWSLLLSYEAQLEKQNAIDHLNIAQAYLSKLSFQHNSKRNALRPFPN 120

Query: 285 -------SPTNFSP------------AGFNHNHYKNDP----PQCQICGKFGHTALICHH 335
                  SP NFSP              FN     + P    PQCQI  KFGH    CH 
Sbjct: 121 HSSLILPSP-NFSPILPSTSNSVHARPSFNKKWPPSKPPSSKPQCQIYHKFGHIVPQCHQ 180

[Close]

BLAST of Lag0004647 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-38
Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 170 QLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNR 229
           ++Q++KKDGLSVSQYL++IKEIT K S+IGEPIS +DH+++I++GLG EYNAFVTSIQNR
Sbjct: 7   EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66

Query: 230 SDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNSRRSVS-RSPTNFSPA 289
           SD   LE+VR+LLLAY+ RLEKQ+SVDQL++ QAN ANL ++  S  + + R P+  SP 
Sbjct: 67  SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTRNHRVPSQHSPR 126

Query: 290 GFNHN---------HYKNDPP-------------QCQICGKFGHTALICHHRTNLAYQ 325
            FN           +  + PP             QCQIC K GHT   C+HR NL Y+
Sbjct: 127 PFNFKTQPGLLGKPNQNSQPPWPPSQQSPRNPKVQCQICFKLGHTTSKCYHRANLQYK 184

[Close]

BLAST of Lag0004647 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-35
Identity = 114/324 (35.19%), Postives = 146/324 (45.06%), Query Frame = 0


Query: 114 PYPTLPQPLSVKLTDTNFFAMEEPAL---------------ECAPSKFLDDQCSQPNPEF 173
           P P+L Q LS+KL +TN    +   L               + +P K+LD  C Q NPEF
Sbjct: 32  PSPSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEF 91

Query: 174 LTWER---------------------------------------------IMGLKTQLQR 233
           + W+R                                             +M L +QLQR
Sbjct: 92  VQWDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQR 151

Query: 234 IKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNP 293
           IKK  + +S+YLS++K + D+F+ IGEP+SYRD L  IL+GL  EY+ FVTSI NRSD P
Sbjct: 152 IKKIDIPLSEYLSRLKFVFDEFATIGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRP 211

Query: 294 ALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNSRRSVSRSPTNFSPAGFNHN 353
           +L+EV SLL  YE RL ++S    L+  QAN               R P           
Sbjct: 212 SLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN--------------PRQP----------- 271

Query: 354 HYKNDPPQCQICGKFGHTALICHHRTNLAYQTP------------------PPQAMLTTA 360
            Y N  PQCQICGK GH AL  +HRTNL Y  P                  P  AMLTT+
Sbjct: 272 GYNNSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPISAMLTTS 321

[Close]

BLAST of Lag0004647 vs. NCBI nr
Match: GFY82848.1 (hypothetical protein Acr_02g0010880 [Actinidia rufa])

HSP 1 Score: 156.8 bits (395), Expect = 4.0e-34
Identity = 96/215 (44.65%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 167 LKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSI 226
           L+T LQ IKKDGL+   Y+ + + + +  ++IGEP++Y DHL + L GLG +YN FVTSI
Sbjct: 44  LRTALQTIKKDGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSI 103

Query: 227 QNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVH-----SNSRRSVSRS 286
           Q+++  P++EEV SLLL+Y+ARLE+QS+ D LS  QAN ANL        + S  S   S
Sbjct: 104 QSQAIRPSIEEVHSLLLSYDARLERQSATDTLSSLQANLANLTYQKPKFKNPSTNSFPNS 163

Query: 287 PTNFSPAGFNHN-HYKNDP------PQCQICGKFGHTALICHHRTNLAYQTPPP-----Q 346
            +   P G N N  Y  +P      P+CQIC K GHTA  C+HRTNL YQ PPP      
Sbjct: 164 NSYSHPRGQNRNPSYSPNPSSPKPRPRCQICLKPGHTANKCYHRTNLNYQPPPPPPRNFN 223

Query: 347 AMLT---TAAHSFSSPDSVSTTSMSSYHPDENWSH 362
           A +T   + + S + P S S+   SS++ D   SH
Sbjct: 224 AYITPNPSISTSSNQPASASSLPDSSWYMDSGASH 258

[Close]

BLAST of Lag0004647 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-62
Identity = 156/356 (43.82%), Postives = 192/356 (53.93%), Query Frame = 0


Query: 96  FFPPQVN-PSQPSTPFAPNPYPTLPQPLSVKLTDTNFFAMEEPALECA------------ 155
           F PP  N  +QP  PF+ NP+PTLPQPL+VKL D NF   +   L               
Sbjct: 3   FPPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGT 62

Query: 156 ---PSKFLDDQCSQPNPEFLTWE------------------------------------- 215
              P +FLD    QPNP +  WE                                     
Sbjct: 63  IMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTR 122

Query: 216 --------RIMGLKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDG 275
                   RIMGLKT+LQ ++KDG SVSQYL++IKEI DKF+A+GEP+SYRDHLAH+LDG
Sbjct: 123 VYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDG 182

Query: 276 LGSEYNAFVTSIQNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNS 335
           LGSEYNAFVTSI NR+D+P+LE+VRSLLLAYEARL+KQ++VDQL++AQAN  NL++  NS
Sbjct: 183 LGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNS 242

Query: 336 RRSVSRSPTNFSPAGFNHNHYKND------------------------PP-------QCQ 360
           +    R P  FS      NHYK+                         PP       QCQ
Sbjct: 243 K----RPPPKFS----FPNHYKHSFPNSPISAAQSQSILGKPQSVHKWPPKPSSSKIQCQ 302

[Close]

BLAST of Lag0004647 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-38
Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 170 QLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNR 229
           ++Q++KKDGLSVSQYL++IKEIT K S+IGEPIS +DH+++I++GLG EYNAFVTSIQNR
Sbjct: 7   EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66

Query: 230 SDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNSRRSVS-RSPTNFSPA 289
           SD   LE+VR+LLLAY+ RLEKQ+SVDQL++ QAN ANL ++  S  + + R P+  SP 
Sbjct: 67  SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTRNHRVPSQHSPR 126

Query: 290 GFNHN---------HYKNDPP-------------QCQICGKFGHTALICHHRTNLAYQ 325
            FN           +  + PP             QCQIC K GHT   C+HR NL Y+
Sbjct: 127 PFNFKTQPGLLGKPNQNSQPPWPPSQQSPRNPKVQCQICFKLGHTTSKCYHRANLQYK 184

[Close]

BLAST of Lag0004647 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-35
Identity = 114/324 (35.19%), Postives = 146/324 (45.06%), Query Frame = 0


Query: 114 PYPTLPQPLSVKLTDTNFFAMEEPAL---------------ECAPSKFLDDQCSQPNPEF 173
           P P+L Q LS+KL +TN    +   L               + +P K+LD  C Q NPEF
Sbjct: 32  PSPSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEF 91

Query: 174 LTWER---------------------------------------------IMGLKTQLQR 233
           + W+R                                             +M L +QLQR
Sbjct: 92  VQWDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQR 151

Query: 234 IKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNP 293
           IKK  + +S+YLS++K + D+F+ IGEP+SYRD L  IL+GL  EY+ FVTSI NRSD P
Sbjct: 152 IKKIDIPLSEYLSRLKFVFDEFATIGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRP 211

Query: 294 ALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVHSNSRRSVSRSPTNFSPAGFNHN 353
           +L+EV SLL  YE RL ++S    L+  QAN               R P           
Sbjct: 212 SLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN--------------PRQP----------- 271

Query: 354 HYKNDPPQCQICGKFGHTALICHHRTNLAYQTP------------------PPQAMLTTA 360
            Y N  PQCQICGK GH AL  +HRTNL Y  P                  P  AMLTT+
Sbjct: 272 GYNNSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPISAMLTTS 321

[Close]

BLAST of Lag0004647 vs. ExPASy TrEMBL
Match: A0A7J0E8R3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-34
Identity = 96/215 (44.65%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 167 LKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSI 226
           L+T LQ IKKDGL+   Y+ + + + +  ++IGEP++Y DHL + L GLG +YN FVTSI
Sbjct: 44  LRTALQTIKKDGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSI 103

Query: 227 QNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVH-----SNSRRSVSRS 286
           Q+++  P++EEV SLLL+Y+ARLE+QS+ D LS  QAN ANL        + S  S   S
Sbjct: 104 QSQAIRPSIEEVHSLLLSYDARLERQSATDTLSSLQANLANLTYQKPKFKNPSTNSFPNS 163

Query: 287 PTNFSPAGFNHN-HYKNDP------PQCQICGKFGHTALICHHRTNLAYQTPPP-----Q 346
            +   P G N N  Y  +P      P+CQIC K GHTA  C+HRTNL YQ PPP      
Sbjct: 164 NSYSHPRGQNRNPSYSPNPSSPKPRPRCQICLKPGHTANKCYHRTNLNYQPPPPPPRNFN 223

Query: 347 AMLT---TAAHSFSSPDSVSTTSMSSYHPDENWSH 362
           A +T   + + S + P S S+   SS++ D   SH
Sbjct: 224 AYITPNPSISTSSNQPASASSLPDSSWYMDSGASH 258

[Close]

BLAST of Lag0004647 vs. ExPASy TrEMBL
Match: A0A7J0DER3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0030110 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 94/207 (45.41%), Postives = 124/207 (59.90%), Query Frame = 0


Query: 167 LKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSI 226
           L+T LQ IKKDGL+   Y+ + + + +  ++IGEP++Y DHL + L GLG +YN FVTSI
Sbjct: 44  LRTALQTIKKDGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSI 103

Query: 227 QNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANLNVH-----SNSRRSVSRS 286
           Q+++  P++EEV SLLL+Y+ARLE+QS+ D LS  QAN ANL        + S  S   S
Sbjct: 104 QSQAIRPSIEEVHSLLLSYDARLERQSATDTLSSLQANLANLTYQKPKFKNPSTNSFPNS 163

Query: 287 PTNFSPAGFNHN-HYKNDP------PQCQICGKFGHTALICHHRTNLAYQTPPP-----Q 346
            +   P G N N  Y  +P      P+CQIC K GHTA  C+HRTNL YQ PPP      
Sbjct: 164 NSYSHPRGQNRNPSYSPNPSSPKPRPRCQICLKPGHTANKCYHRTNLNYQPPPPPPRNFN 223

Query: 347 AMLT-TAAHSFSSPDSVSTTSMSSYHP 356
           A +T   + S S P S     +S  HP
Sbjct: 224 AYITPNPSISTSRPTSQPVLLLSQIHP 250

[Close]

BLAST of Lag0004647 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-08
Identity = 42/136 (30.88%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 163 RIMGLKTQLQRIKKDGLSVSQYLSQIKEITDKFSAIGEPISYRDHLAHILDGLGSEYNAF 222
           R +  + +L+    D LSV +Y  ++K ++D  + +  PIS R  + H+L+GL  +Y+  
Sbjct: 115 RALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYI 174

Query: 223 VTSIQNRSDNPALEEVRSLLLAYEARLEKQSSVDQLSLAQANFANL-NVHSNSRRSVSRS 282
           +  I+++S  P+  E RS+LL  E+RL  +S   + SL+  N  +L NV     R   R 
Sbjct: 175 LNVIKHKSPFPSFTEARSMLLMEESRLSNKS---KSSLSHTNHPSLSNVLFTVPRQQERY 234

Query: 283 PTNFSPAGFNHNHYKN 298
           P  +      HN+  N
Sbjct: 235 PQEY------HNNNSN 241

The following BLAST results are available for this feature:

BLAST of Lag0004647 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	3.5e-62	43.82	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
XP_038891713.1	4.1e-39	51.27	uncharacterized protein LOC120081111 [Benincasa hispida]	[more]
XP_022148871.1	2.1e-38	52.81	uncharacterized protein LOC111017438 [Momordica charantia]	[more]
RVW69807.1	2.8e-35	35.19	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
GFY82848.1	4.0e-34	44.65	hypothetical protein Acr_02g0010880 [Actinidia rufa]	[more]

BLAST of Lag0004647 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0004647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	1.7e-62	43.82	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D6N7	1.0e-38	52.81	uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A438GC62	1.3e-35	35.19	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A7J0E8R3	1.9e-34	44.65	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1	[more]
A0A7J0DER3	1.6e-33	45.41	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0030110 PE=4 SV=1	[more]

BLAST of Lag0004647 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	1.4e-08	30.88	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 160..251 e-value: 3.0E-14 score: 53.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..71
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 143..359
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 143..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004647.1	Lag0004647.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding