Lag0004633 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004633
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger protein
Locationchr6: 5621718 .. 5622488 (-)
RNA-Seq ExpressionLag0004633
SyntenyLag0004633
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGCCCTGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTCCAACGGAGGGACTCCTGTCAGCGCTGTGGAGACCCTAGGGCTGACTTCGGCGGCGGCTTCGGCGGTGGAAGAGTTGGTTCTTCGTCTTTTGGTTTCACCACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAGGATGAGGCTTCCTCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTACCCTTCCCAATTTTACCCTAAATTTCATTAATTTTTTTTTTCTATTTTAGTATTTAAACTTTTAAAATATCCCATCTGATTCTAAACTTTCAAATTCTCTATTTTAGTTATTTCACCCTCAATCAATTTCGATAACTCAAACCATATATTTATATCAGCATGTTAGCATAGTTCTTAGATTGAACTAAAAAAAAATTGTACTAAAATAAAACAAATGTAATCTTCCATTATTTTTTTTTAGATTTAAACTTTATATTATATCATGAAATTGTTCGATGAGTCGTTTATATTTGGATGGAACGACAGATCGGATTGCAACGAGCATAACTTTGCTAGTCGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAG

mRNA sequence

ATGAGCCGCCCTGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTCCAACGGAGGGACTCCTGTCAGCGCTGTGGAGACCCTAGGGCTGACTTCGGCGGCGGCTTCGGCGGTGGAAGAGTTGGTTCTTCGTCTTTTGGTTTCACCACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAGGATGAGGCTTCCTCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAACGAGCATAACTTTGCTAGTCGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAG

Coding sequence (CDS)

ATGAGCCGCCCTGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTCCAACGGAGGGACTCCTGTCAGCGCTGTGGAGACCCTAGGGCTGACTTCGGCGGCGGCTTCGGCGGTGGAAGAGTTGGTTCTTCGTCTTTTGGTTTCACCACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAGGATGAGGCTTCCTCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAACGAGCATAACTTTGCTAGTCGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAG

Protein sequence

MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Homology
BLAST of Lag0004633 vs. NCBI nr
Match: XP_023002539.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 8.0e-84
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADF-GGGFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADF GGG+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCGASKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

BLAST of Lag0004633 vs. NCBI nr
Match: KAG6585459.1 (Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.5 bits (820), Expect = 8.0e-84
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0

Query: 1    MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
            MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 971  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGD 1030

Query: 61   WYCAVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
            WYCAVANCGAHNFASRSICFKCGASKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 1031 WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 1090

Query: 121  ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
            ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 1091 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 1124

BLAST of Lag0004633 vs. NCBI nr
Match: KAG7020377.1 (SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.2 bits (814), Expect = 4.0e-83
Identity = 145/154 (94.16%), Postives = 151/154 (98.05%), Query Frame = 0

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSS+FGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSTFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCGASKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECF+CNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFKCNAPRDSNSKSPYS 154

BLAST of Lag0004633 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 4.0e-83
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  +GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCGASKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

BLAST of Lag0004633 vs. NCBI nr
Match: XP_022951649.1 (TATA-binding protein-associated factor 2N-like [Cucurbita moschata])

HSP 1 Score: 317.4 bits (812), Expect = 6.8e-83
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCGASKDEAS+AAYDGDL+R+RGFNFGGASN PGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

BLAST of Lag0004633 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 72/256 (28.12%), Postives = 84/256 (32.81%), Query Frame = 0

Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCG----------------DPRADFGGGFGGGRV---- 62
           RPGDWNC  C   NFQRR SC RC                  P   +G  +G G      
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  ---GS--------------------------SSFGFTTGPDVRPGDWYCAVANCGAHNFA 122
              GS                          SS  F      R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

Query: 123 SRSICFKCGASK-------DEAS---SAAYD----------------------------G 154
               C +CGAS+       D AS   + +Y                              
Sbjct: 463 KNVCCLRCGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSIN 522

BLAST of Lag0004633 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 36/111 (32.43%), Postives = 44/111 (39.64%), Query Frame = 0

Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYC 62
           R GDW C SCN+ NF  R+ C RC  P+ D  G  GGG  G    G   G   R  D   
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGND--- 334

Query: 63  AVANCGAHNFASRSICFKCGASKDEASSAAYDGDLTRMRGFNFGGASNRPG 114
                G   + +R    + G S+         G  +R    N GG   R G
Sbjct: 335 --RGSGGGGYHNRD---RGGNSQGGGGGGGGGGGYSRFNDNNGGGRGGRGG 377

BLAST of Lag0004633 vs. ExPASy Swiss-Prot
Match: P32770 (Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRP1 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 18/27 (66.67%), Postives = 19/27 (70.37%), Query Frame = 0

Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDP 30
           RPGDWNC SC   NFQRR +C RC  P
Sbjct: 355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

BLAST of Lag0004633 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04
Identity = 30/87 (34.48%), Postives = 37/87 (42.53%), Query Frame = 0

Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVR----PG 64
          GDW C  + C ++NF RR SC RCG  +          + G +  G T     R      
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMM---KAGGTEIGKTLAEKSRGLFSAN 70

Query: 65 DWYCAVANCGAHNFASRSICFKCGASK 86
          DW C    CG  N+A RS C  C   K
Sbjct: 71 DWQC--KTCGNVNWARRSECNMCNTPK 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023002539.18.0e-8495.45uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima][more]
KAG6585459.18.0e-8495.45Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp... [more]
KAG7020377.14.0e-8394.16SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023538151.14.0e-8394.81uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo][more]
XP_022951649.16.8e-8394.81TATA-binding protein-associated factor 2N-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
O138011.7e-1228.13Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra... [more]
Q272944.5e-0532.43RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2[more]
P327703.8e-0466.67Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... [more]
Q5ZLX58.5e-0434.48Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 5..29
e-value: 7.3E-6
score: 35.5
coord: 117..143
e-value: 1.6E-5
score: 34.3
coord: 58..84
e-value: 4.4E-7
score: 39.5
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 115..144
e-value: 6.7E-9
score: 34.9
coord: 56..85
e-value: 6.5E-6
score: 25.4
coord: 3..29
e-value: 6.5E-4
score: 19.0
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 60..81
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 7..26
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 119..140
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 56..87
score: 9.980816
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 115..146
score: 10.579303
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 3..32
score: 9.969523
NoneNo IPR availableGENE3D4.10.1060.10coord: 2..32
e-value: 2.2E-10
score: 41.6
coord: 108..147
e-value: 1.3E-11
score: 45.5
coord: 51..88
e-value: 1.7E-13
score: 51.6
NoneNo IPR availablePANTHERPTHR23111ZINC FINGER PROTEINcoord: 1..151
NoneNo IPR availablePANTHERPTHR23111:SF26RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEINcoord: 1..151
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 2..31
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 52..88
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 109..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004633.1Lag0004633.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding