Lag0004625 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004625
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionExpansin-like EG45 domain-containing protein
Locationchr6: 5562139 .. 5562662 (-)
RNA-Seq ExpressionLag0004625
SyntenyLag0004625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTCAACACAAGGAAACAACAATAGCTCTCCTCCTCTTCTTATTCTTTAAACACATTTTCATAGCTCTTGCAGACATCGGCACTGCCACAGCCTATGGTCCTCCATATCTTCGTAAGTAAAAACATTAAACACATAACTCCATATACTCAATCATATTAGTTGCATCAGTAATGATTTTTCCCCCAACAACGACGTTTAATTTGCAGCCACCATGTGTAATGGGAACGACGTCAACCAATTCCCGCCTGGCAACCTCTTTGTGGCGGTCAACGAAGGACTATGGGACAACGGCGCTGCCTGCGGTCGACGATATAGATTACGATGCTTGAGTGGACGAAACCGCCCGTGCAAGACCGATATCATCGAAGTTCAAGTGGTGAACTTCTGTCCAAAGTCGCCATGCCCCTCTTCTTTTCTCATGTCCAAAGAAGCCTTTTCTGCCATCTCCCACCTCCCCAATGCTAGACTAAATGTCGAATACATTGAGTACGTAATCTTTTCTCCTTTTCCGAGTTAA

mRNA sequence

ATGGCACTTCAACACAAGGAAACAACAATAGCTCTCCTCCTCTTCTTATTCTTTAAACACATTTTCATAGCTCTTGCAGACATCGGCACTGCCACAGCCTATGGTCCTCCATATCTTCCCACCATGTGTAATGGGAACGACGTCAACCAATTCCCGCCTGGCAACCTCTTTGTGGCGGTCAACGAAGGACTATGGGACAACGGCGCTGCCTGCGGTCGACGATATAGATTACGATGCTTGAGTGGACGAAACCGCCCGTGCAAGACCGATATCATCGAAGTTCAAGTGGTGAACTTCTGTCCAAAGTCGCCATGCCCCTCTTCTTTTCTCATGTCCAAAGAAGCCTTTTCTGCCATCTCCCACCTCCCCAATGCTAGACTAAATGTCGAATACATTGAGTACGTAATCTTTTCTCCTTTTCCGAGTTAA

Coding sequence (CDS)

ATGGCACTTCAACACAAGGAAACAACAATAGCTCTCCTCCTCTTCTTATTCTTTAAACACATTTTCATAGCTCTTGCAGACATCGGCACTGCCACAGCCTATGGTCCTCCATATCTTCCCACCATGTGTAATGGGAACGACGTCAACCAATTCCCGCCTGGCAACCTCTTTGTGGCGGTCAACGAAGGACTATGGGACAACGGCGCTGCCTGCGGTCGACGATATAGATTACGATGCTTGAGTGGACGAAACCGCCCGTGCAAGACCGATATCATCGAAGTTCAAGTGGTGAACTTCTGTCCAAAGTCGCCATGCCCCTCTTCTTTTCTCATGTCCAAAGAAGCCTTTTCTGCCATCTCCCACCTCCCCAATGCTAGACTAAATGTCGAATACATTGAGTACGTAATCTTTTCTCCTTTTCCGAGTTAA

Protein sequence

MALQHKETTIALLLFLFFKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISHLPNARLNVEYIEYVIFSPFPS
Homology
BLAST of Lag0004625 vs. NCBI nr
Match: KAG6585463.1 (EG45-like domain containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 3.4e-60
Identity = 119/139 (85.61%), Postives = 127/139 (91.37%), Query Frame = 0

Query: 1   MALQHKETTIALLLFL-FFKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVA 60
           MALQ   TT+A+L+ + FF HI +A  DIGTATAYGPPYLPT+CNGN V+QFPPGNLFVA
Sbjct: 1   MALQ--ATTMAVLVVVFFFTHISMARGDIGTATAYGPPYLPTLCNGNRVDQFPPGNLFVA 60

Query: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120
           VNEGLWDNGAACGRRYRLRCLSGRN PCKTDIIEVQVVNFCPKSPCPSSFLMSKEAF+AI
Sbjct: 61  VNEGLWDNGAACGRRYRLRCLSGRNHPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFAAI 120

Query: 121 SHLPNARLNVEYIEYVIFS 139
           S LPNARLNVEYIEYVIFS
Sbjct: 121 SRLPNARLNVEYIEYVIFS 137

BLAST of Lag0004625 vs. NCBI nr
Match: KAG6598574.1 (EG45-like domain containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 3.4e-60
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 0

Query: 1   MALQH-KETTIALLLFLFFKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVA 60
           MALQH K TT+ALL FL F+HI  A ADIGTA  YGPPYLPT CNGN+++QFPPGN FVA
Sbjct: 1   MALQHNKPTTMALLFFLVFEHISTARADIGTAIVYGPPYLPTRCNGNNIDQFPPGNFFVA 60

Query: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120
           VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI
Sbjct: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120

Query: 121 SHLPNARLNVEYIEYVIFS 139
           S L +A+LNVEYIEY I S
Sbjct: 121 SRLSSAKLNVEYIEYDIIS 139

BLAST of Lag0004625 vs. NCBI nr
Match: XP_022961955.1 (EG45-like domain containing protein [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 4.9e-59
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0

Query: 1   MALQH-KETTIALLLFLFFKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVA 60
           MALQH K TT+ALL FL F+HI  A ADIGTA  YGPPYLPT CNGN+++QFPPGN FVA
Sbjct: 1   MALQHNKPTTMALLFFLVFEHISTACADIGTAIVYGPPYLPTRCNGNNIDQFPPGNFFVA 60

Query: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120
           VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI
Sbjct: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120

Query: 121 SHLPNARLNVEYIE 134
           S L +A+LNVEYIE
Sbjct: 121 SRLSSAKLNVEYIE 134

BLAST of Lag0004625 vs. NCBI nr
Match: KAG7029512.1 (EG45-like domain containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 6.4e-59
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0

Query: 1   MALQH-KETTIALLLFLFFKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVA 60
           MALQH K TT+ALL FL F+HI  A ADIGTA  YGPPYLPT CNGN+++QFPPGN FVA
Sbjct: 1   MALQHNKPTTMALLFFLVFEHISTARADIGTAIVYGPPYLPTRCNGNNIDQFPPGNFFVA 60

Query: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120
           VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI
Sbjct: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120

Query: 121 SHLPNARLNVEYIE 134
           S L +A+LNVEYIE
Sbjct: 121 SRLSSAKLNVEYIE 134

BLAST of Lag0004625 vs. NCBI nr
Match: XP_023545437.1 (EG45-like domain containing protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 8.3e-59
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0

Query: 1   MALQH-KETTIALLLFLFFKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVA 60
           MALQH K TT+ALL FL F+HI  A ADIGTA AYGPPYLPT CNGN+++QFPPGN FVA
Sbjct: 1   MALQHNKPTTMALLFFLVFEHISTARADIGTAIAYGPPYLPTRCNGNNIDQFPPGNFFVA 60

Query: 61  VNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120
           VNEGLWDNGAACGRRYRLRCLSGRN PCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI
Sbjct: 61  VNEGLWDNGAACGRRYRLRCLSGRNHPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAI 120

Query: 121 SHLPNARLNVEYIE 134
           S L +A+LNVEYIE
Sbjct: 121 SRLSSAKLNVEYIE 134

BLAST of Lag0004625 vs. ExPASy Swiss-Prot
Match: Q9ZP41 (EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 0

Query: 24  ALADIGTATAYGPPYLPTMCNG--NDVNQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLS 83
           A A  GTAT Y PPY+P+ CNG  ND      G +  A +  +W+NGA C + +R++C  
Sbjct: 22  AYASEGTATFYTPPYVPSACNGYKND------GVMIAAASYAIWNNGAVCNKSFRVKCTG 81

Query: 84  GRNR----PCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISHLPNARLNVEY 132
             N+    PC+   + V++V+ CP + C ++  +S+EAFS I++    ++ +E+
Sbjct: 82  ATNQGTPHPCRGGSVLVKIVDLCP-AGCQATIDLSQEAFSQIANPDAGKIKIEF 128

BLAST of Lag0004625 vs. ExPASy Swiss-Prot
Match: Q9ZV52 (EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-13
Identity = 42/125 (33.60%), Postives = 63/125 (50.40%), Query Frame = 0

Query: 12  LLLFLFFKHIFIALADI--GTATAYGPPYLPTMCNGNDVNQFPPGNLFVAVNEGLWDNGA 71
           +++ + F  I   +A+   G A  Y PPY  + C G          L V V   LW NG 
Sbjct: 9   VVVMIVFAQILAPIAEAAQGKAVYYDPPYTRSACYGTQRE-----TLVVGVKNNLWQNGR 68

Query: 72  ACGRRYRLRCLSGR---NRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISHLPNAR 131
           ACGRRYR+RC+      +R C    ++V+VV+FC + PC     +S++AF  I++     
Sbjct: 69  ACGRRYRVRCIGATYNFDRACTGRTVDVKVVDFC-REPCNGDLNLSRDAFRVIANTDAGN 127

BLAST of Lag0004625 vs. ExPASy Swiss-Prot
Match: Q9M0C2 (Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EGC1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 0

Query: 12  LLLFLF-FKHIFIALADIGTATAYGPPYLPTMCNGNDVNQFPPGNLFVAVNEGLWDNGAA 71
           +L+FLF F +    +A     T+Y P Y  T            G +  A ++ LWDNG  
Sbjct: 11  VLVFLFSFSYATPGIATF--YTSYTPCYRGTQ----------EGVMIAAASDTLWDNGRV 70

Query: 72  CGRRYRLRCLSGRN---RPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISHLPNARL 131
           CG+ + ++C   RN    PC    ++V++V+ CP S C S+  +S+EAF+ I++     +
Sbjct: 71  CGKMFTVKCSGPRNAVPHPCTGKSVKVKIVDHCP-SGCASTLDLSREAFAQIANPVAGII 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6585463.13.4e-6085.61EG45-like domain containing protein, partial [Cucurbita argyrosperma subsp. soro... [more]
KAG6598574.13.4e-6084.17EG45-like domain containing protein, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022961955.14.9e-5985.07EG45-like domain containing protein [Cucurbita moschata][more]
KAG7029512.16.4e-5985.07EG45-like domain containing protein, partial [Cucurbita argyrosperma subsp. argy... [more]
XP_023545437.18.3e-5985.07EG45-like domain containing protein [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9ZP411.7e-1435.09EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 ... [more]
Q9ZV524.2e-1333.60EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE... [more]
Q9M0C21.4e-0831.45Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana OX=3702 G... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 58..131
e-value: 0.0052
score: 20.9
IPR007112Expansin/pollen allergen, DPBB domainPROSITEPS50842EXPANSIN_EG45coord: 29..131
score: 11.71692
IPR036908RlpA-like domain superfamilyGENE3D2.40.40.10coord: 27..134
e-value: 1.8E-20
score: 75.3
IPR036908RlpA-like domain superfamilySUPERFAMILY50685Barwin-like endoglucanasescoord: 13..131
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 59..131
e-value: 2.9E-9
score: 37.1
NoneNo IPR availablePANTHERPTHR47480EG45-LIKE DOMAIN CONTAINING PROTEINcoord: 9..133
NoneNo IPR availablePANTHERPTHR47480:SF6RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATEDcoord: 9..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004625.1Lag0004625.1mRNA