Sequences
The following sequences are available for this feature:
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAGAATCAATAGGAAATGGCCCATTAATGTTCTGGAGGCAACAACTATATGGGAGGGGCTTAAAATGATAATAGATCCCTGCTATCAAAACCATACCCCTATTGAAGTGGAATCAGACGCCATGGAAGTCGTCAACCTACTAAACGGAGCAGGCAAAAACCTTTTGGAGGTGAAACCCATCATCGATGCAATCTCTATCCTCGCTGCCCGCTCGCAAAATGTAATCTTCAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTGTGTTTCTAGGCTAGCTTGCGATTCCGATTTTATTGAGAATCAGGAGTCTTCCCCTTCGTGGGAAACAAGGCTTCATTTTTGGGCTCTTCAGATTCCTTCATGGTTTTCCTTGTGCATTTATGAGGGTTGTTGTGACTGTTAG
ATGCGAAGAATCAATAGGAAATGGCCCATTAATGTTCTGGAGGCAACAACTATATGGGAGGGGCTTAAAATGATAATAGATCCCTGCTATCAAAACCATACCCCTATTGAAGTGGAATCAGACGCCATGGAAGTCGTCAACCTACTAAACGGAGCAGGCAAAAACCTTTTGGAGGTGAAACCCATCATCGATGCAATCTCTATCCTCGCTGCCCGCTCGCAAAATGTAATCTTCAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTGTGTTTCTAGGCTAGCTTGCGATTCCGATTTTATTGAGAATCAGGAGTCTTCCCCTTCGTGGGAAACAAGGCTTCATTTTTGGGCTCTTCAGATTCCTTCATGGTTTTCCTTGTGCATTTATGAGGGTTGTTGTGACTGTTAG
ATGCGAAGAATCAATAGGAAATGGCCCATTAATGTTCTGGAGGCAACAACTATATGGGAGGGGCTTAAAATGATAATAGATCCCTGCTATCAAAACCATACCCCTATTGAAGTGGAATCAGACGCCATGGAAGTCGTCAACCTACTAAACGGAGCAGGCAAAAACCTTTTGGAGGTGAAACCCATCATCGATGCAATCTCTATCCTCGCTGCCCGCTCGCAAAATGTAATCTTCAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTGTGTTTCTAGGCTAGCTTGCGATTCCGATTTTATTGAGAATCAGGAGTCTTCCCCTTCGTGGGAAACAAGGCTTCATTTTTGGGCTCTTCAGATTCCTTCATGGTTTTCCTTGTGCATTTATGAGGGTTGTTGTGACTGTTAG
MRRINRKWPINVLEATTIWEGLKMIIDPCYQNHTPIEVESDAMEVVNLLNGAGKNLLEVKPIIDAISILAARSQNVIFRFCRRELNTVAHCVSRLACDSDFIENQESSPSWETRLHFWALQIPSWFSLCIYEGCCDC
Homology
BLAST of Lag0004613 vs. NCBI nr
Match:
TXG48608.1 (hypothetical protein EZV62_024483 [Acer yangbiense])
HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
TXG48608.1 2.5e-04 41.67 hypothetical protein EZV62_024483 [Acer yangbiense] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C G A A G A A T C A A T A G G A A A T G G C C C A T T A A T G T T C T G G A G G C A A C A A C T A T A T G G G A G G G G C T T A A A A T G A T A A T A G A T C C C T G C T A T C A A A A C C A T A C C C C T A T T G A A G T G G A A T C A G A C G C C A T G G A A G T C G T C A A C C T A C T A A A C G G A G C A G G C A A A A A C C T T T T G G A G G T G A A A C C C A T C A T C G A T G C A A T C T C T A T C C T C G C T G C C C G C T C G C A A A A T G T A A T C T T C A G A T T T T G T A G A A G G G A A T T G A A C A C A G T C G C C C A C T G T G T T T C T A G G C T A G C T T G C G A T T C C G A T T T T A T T G A G A A T C A G G A G T C T T C C C C T T C G T G G G A A A C A A G G C T T C A T T T T T G G G C T C T T C A G A T T C C T T C A T G G T T T T C C T T G T G C A T T T A T G A G G G T T G T T G T G A C T G T T A G 50 100 150 200 250 300 350 400 Expect = 1.2E-6 / Score = 30.5 Expect = 3.9E-11 / Score = 42.8 Expect = 1.015E-11 / Score = 56.1684 Score = Sequence G3DSA:3.30.420.10 PF13456 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 3..103 IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 4..95 IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 10..94 IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 8..99
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0004523 RNA-DNA hybrid ribonuclease activity
