Lag0004606 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004606
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 5410899 .. 5412307 (-)
RNA-Seq Expression	Lag0004606
Synteny	Lag0004606

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGCCGTCTAAAGGTCTGAGAGTTGAAGACCAAGAAGCAAAGAAACAATGCTTACCGGAAAATTTCCCGAGCTCTAGCACATGTGAGATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGGCATCAGCCCATTCAGAGTCACATGATTCACACAGCAATATTGGGAGCAGTTCAGACTTTGTAAATTCTGGTAAGTGCATGCCCATCGTCAACCGAGTCTGATGTTTTCCTTTGGATATGCACCGTCAATTCTTGAAACCTACACCTGTGATCTGTTTGTAAAGCTCCATATTTACTTGTTGCATTGGATTTTCTTTCATTATTTTCTTTTTGAAGTTTGGTTTGACTGGTGATAAAATTAATTTTACTTGGATTAGAGCTTGATGGGCAATCTTTTAATCTCGGCTCCTATAGCTGTGATTCTAACATAATTTTTTTCTTCCAGTTTCCTATGTCAACAAATAAGGCATTTATAATGGTTCATGTATCTTTCATTGAAGTTGTATGCTCTTAGTTGTTCTTATTTGCTACATTCTGCTGCTGTTTTCACACTCTGATTAGTGATTTCTAAATTAATGATGTTTATCCTCTGCATCACATGTTCATTATGATTTGATTGTTCCTCAACTGCTCTGTTGTTTTGGGTCGGGGGTAGGGGGAGTTGATATGGAATCTATTGCTGTTGAGGCTTATTTTTGTCTGATAATCTTGGTACATTGAAGAAAACAAAATTCATCATCTGTTTCAATCCTAGTTTTCTGAGTTTAAGCTAACCTGAATAAGCATTAATGGTTTCAGGATTACTTCTTTGGAATGAGACCAGGAAGCAATGGATTGGAAACAAAATGTCCGAGGGCCAAAAGCAAGTTCGAGAACCCAAAATAAGGTGAATGAATAGTGTTTAATATAATATGATGCAGGAAGTGTTGGTATTCCTCTTATTGATTCATATTGTAATGCAAACAAACCGTTCTCTTAAAACCACATAAACCTCTTAGCTTCATTTGATGGACCTGAAAATCAAACGCGGTTGGACTTAAAACCTCATCCTGAATTTACAAATTCTTGCTCATGAGACACCAACAAAAATTTGGACCTTTTTTTCACAGATCTTACCGTCACTGTTACTTGCGTGGTTCTATCACAGATACATTACTAATTAGTATGCCCCCAAAATCTTAAACTTCTGCAGTTGGAATGCTACTTACGAGAGCTTATTAACGACGAACAAGCCGTTCCCCGAGACCATTCCTCTTGCTGTAAGTTGTCAGCAGGTTTCTCTTGTTATCTACTGTATTTTCTTGTCCAACCAGACAATGATTGTTCATTTGCTTATGAAATGCCAGGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA

mRNA sequence

ATGGATGGGCCGTCTAAAGGTCTGAGAGTTGAAGACCAAGAAGCAAAGAAACAATGCTTACCGGAAAATTTCCCGAGCTCTAGCACATGTGAGATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGGCATCAGCCCATTCAGAGTCACATGATTCACACAGCAATATTGGGAGCAGTTCAGACTTTGTAAATTCTGGATTACTTCTTTGGAATGAGACCAGGAAGCAATGGATTGGAAACAAAATGTCCGAGGGCCAAAAGCAAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGAGAGCTTATTAACGACGAACAAGCCGTTCCCCGAGACCATTCCTCTTGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA

Coding sequence (CDS)

ATGGATGGGCCGTCTAAAGGTCTGAGAGTTGAAGACCAAGAAGCAAAGAAACAATGCTTACCGGAAAATTTCCCGAGCTCTAGCACATGTGAGATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGGCATCAGCCCATTCAGAGTCACATGATTCACACAGCAATATTGGGAGCAGTTCAGACTTTGTAAATTCTGGATTACTTCTTTGGAATGAGACCAGGAAGCAATGGATTGGAAACAAAATGTCCGAGGGCCAAAAGCAAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGAGAGCTTATTAACGACGAACAAGCCGTTCCCCGAGACCATTCCTCTTGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA

Protein sequence

MDGPSKGLRVEDQEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAHSESHDSHSNIGSSSDFVNSGLLLWNETRKQWIGNKMSEGQKQVREPKISWNATYESLLTTNKPFPETIPLAEMIEFLVDVWEQEGLYD

Homology

[Close]

BLAST of Lag0004606 vs. NCBI nr
Match: XP_008445215.1 (PREDICTED: uncharacterized protein LOC103488310 isoform X2 [Cucumis melo] >XP_008445216.1 PREDICTED: uncharacterized protein LOC103488310 isoform X2 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MDGPSKGLRVEDQEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAHSESHDSHSNIGSS 60
           MDGPSKGLRV+D+EAKKQCLPENFPSSSTCEMDNSTVWSQRSMASA  +SHDS SNIGSS
Sbjct: 1   MDGPSKGLRVKDKEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASA--QSHDSQSNIGSS 60

Query: 61  SDFVNSGLLLWNETRKQWIGNKMSEGQKQVREPKISWNATYESLLTTNKPFPETIPLAEM 120
           +DFVNSGLLLWNETRKQW+GNKMS+ QKQV+EPKISWNATY+SLLTTNKPFPE IPL EM
Sbjct: 61  TDFVNSGLLLWNETRKQWVGNKMSKSQKQVQEPKISWNATYDSLLTTNKPFPEAIPLTEM 120

Query: 121 IEFLVDVWEQEGLYD 136
           IEFLVDVWEQEGLYD
Sbjct: 121 IEFLVDVWEQEGLYD 133

[Close]

BLAST of Lag0004606 vs. NCBI nr
Match: XP_008445211.1 (PREDICTED: uncharacterized protein LOC103488310 isoform X1 [Cucumis melo] >XP_008445213.1 PREDICTED: uncharacterized protein LOC103488310 isoform X1 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MDGPSKGLRVEDQEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAHSESHDSHSNIGSS 60
           MDGPSKGLRV+D+EAKKQCLPENFPSSSTCEMDNSTVWSQRSMASA  +SHDS SNIGSS
Sbjct: 64  MDGPSKGLRVKDKEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASA--QSHDSQSNIGSS 123

Query: 61  SDFVNSGLLLWNETRKQWIGNKMSEGQKQVREPKISWNATYESLLTTNKPFPETIPLAEM 120
           +DFVNSGLLLWNETRKQW+GNKMS+ QKQV+EPKISWNATY+SLLTTNKPFPE IPL EM
Sbjct: 124 TDFVNSGLLLWNETRKQWVGNKMSKSQKQVQEPKISWNATYDSLLTTNKPFPEAIPLTEM 183

Query: 121 IEFLVDVWEQEGLYD 136
           IEFLVDVWEQEGLYD
Sbjct: 184 IEFLVDVWEQEGLYD 196

[Close]

BLAST of Lag0004606 vs. NCBI nr
Match: KAA0064925.1 (uncharacterized protein E6C27_scaffold82G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MDGPSKGLRVEDQEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAHSESHDSHSNIGSS 60
           MDGPSKGLRV+D+EAKKQCLPENFPSSSTCEMDNSTVWSQRSMASA  +SHDS SNIGSS
Sbjct: 96  MDGPSKGLRVKDKEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASA--QSHDSQSNIGSS 155

Query: 61  SDFVNSGLLLWNETRKQWIGNKMSEGQKQVREPKISWNATYESLLTTNKPFPETIPLAEM 120
           +DFVNSGLLLWNETRKQW+GNKMS+ QKQV+EPKISWNATY+SLLTTNKPFPE IPL EM
Sbjct: 156 TDFVNSGLLLWNETRKQWVGNKMSKSQKQVQEPKISWNATYDSLLTTNKPFPEAIPLTEM 215

Query: 121 IEFLVDVWEQEGLYD 136
           IEFLVDVWEQEGLYD
Sbjct: 216 IEFLVDVWEQEGLYD 228

[Close]

BLAST of Lag0004606 vs. NCBI nr
Match: XP_022131290.1 (uncharacterized protein LOC111004556 [Momordica charantia])

HSP 1 Score: 247.7 bits (631), Expect = 5.8e-62
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MDGPSKGLRVEDQEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAHSESHDSHSNIGSS 60
           MDGPSKGLRVEDQEAKKQCLPENFPSSST EMDNSTVWSQRS+ASA  +SHDSHSNIGSS
Sbjct: 1   MDGPSKGLRVEDQEAKKQCLPENFPSSSTYEMDNSTVWSQRSIASA--KSHDSHSNIGSS 60

Query: 61  SDFVNSGLLLWNETRKQWIGNKMSEGQKQVREPKISWNATYESLLTTNKPFPETIPLAEM 120
            DFVNSGLLLWNETRKQW GNK+SE QKQVREPKISWNATYESLL TNKPFPE +PLAEM
Sbjct: 61  RDFVNSGLLLWNETRKQWAGNKLSESQKQVREPKISWNATYESLLGTNKPFPEAVPLAEM 120

Query: 121 IEFLVDVWEQEGLYD 136
           IEFLVDVWEQEGLYD
Sbjct: 121 IEFLVDVWEQEGLYD 133

[Close]

BLAST of Lag0004606 vs. NCBI nr
Match: XP_022951411.1 (uncharacterized protein LOC111454240 isoform X2 [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 120/135 (88.89%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MDGPSKGLRVEDQEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAHSESHDSHSNIGSS 60
           MDGPS GLRVEDQEAKKQCLPENF SSSTCEMDNSTVWSQRSMASA  +SHDSH+N+GSS
Sbjct: 1   MDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASA--QSHDSHNNVGSS 60

Query: 61  SDFVNSGLLLWNETRKQWIGNKMSEGQKQVREPKISWNATYESLLTTNKPFPETIPLAEM 120
           ++FVNSGLLLWNETRKQW+GNK SE QK+VREPKISWNATY+SLLTTNKPFPE IPLAEM
Sbjct: 61  TEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEM 120

Query: 121 IEFLVDVWEQEGLYD 136
           IEFLVDVWEQEGLYD
Sbjct: 121 IEFLVDVWEQEGLYD 133

The following BLAST results are available for this feature:

BLAST of Lag0004606 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445215.1	3.4e-62	89.63	PREDICTED: uncharacterized protein LOC103488310 isoform X2 [Cucumis melo] >XP_00...	[more]
XP_008445211.1	3.4e-62	89.63	PREDICTED: uncharacterized protein LOC103488310 isoform X1 [Cucumis melo] >XP_00...	[more]
KAA0064925.1	3.4e-62	89.63	uncharacterized protein E6C27_scaffold82G002430 [Cucumis melo var. makuwa]	[more]
XP_022131290.1	5.8e-62	91.11	uncharacterized protein LOC111004556 [Momordica charantia]	[more]
XP_022951411.1	1.0e-61	88.89	uncharacterized protein LOC111454240 isoform X2 [Cucurbita moschata]	[more]

BLAST of Lag0004606 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025124	Domain of unknown function DUF4050	PFAM	PF13259	DUF4050	coord: 94..135 e-value: 4.4E-13 score: 50.0 coord: 28..93 e-value: 2.1E-8 score: 34.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR33373:SF15	DUF4050 FAMILY PROTEIN	coord: 1..135
None	No IPR available	PANTHER	PTHR33373	OS07G0479600 PROTEIN	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004606.1	Lag0004606.1	mRNA