Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAGGCCTTTCAGAGAGGGCCTGATCGGATCGAGGAGGATAATGATGATCGTGAAGTCGGAGTTTCGTATTCCTCCTGTGGATGTTTCTTCGGATTCGGATCGAGGCTGTGTCGGAGCAGCAGTGTTCGATGCAGATATCTGCTGCTGCAACCGCATCGGGAGAACGAGGAGGAATTGGTGAAGCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCAAGGAGATTATAAAAGCTGTGGCGGGGCGGAAGTGGAGAAGCTTCATTAATGGAATAATTAACAAGAGACGGAGTGTGAGGTTCCAGTATGATCCGAGGAGTTATGCTCTGAATTTTGACGAAGGGATCGGAGAAGAAGGCGGCGGAGGTGGACTCCATGGTTTCAGGCCGCCCTCTGTGTCTCCGATCGGATTGGGGATTGGGATGAACAGAAGTGAAATATGA mRNA sequence
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAGGCCTTTCAGAGAGGGCCTGATCGGATCGAGGAGGATAATGATGATCGTGAAGTCGGAGTTTCGTATTCCTCCTGTGGATGTTTCTTCGGATTCGGATCGAGGCTGTGTCGGAGCAGCAGTGTTCGATGCAGATATCTGCTGCTGCAACCGCATCGGGAGAACGAGGAGGAATTGGTGAAGCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCAAGGAGATTATAAAAGCTGTGGCGGGGCGGAAGTGGAGAAGCTTCATTAATGGAATAATTAACAAGAGACGGAGTGTGAGGTTCCAGTATGATCCGAGGAGTTATGCTCTGAATTTTGACGAAGGGATCGGAGAAGAAGGCGGCGGAGGTGGACTCCATGGTTTCAGGCCGCCCTCTGTGTCTCCGATCGGATTGGGGATTGGGATGAACAGAAGTGAAATATGA Coding sequence (CDS)
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAGGCCTTTCAGAGAGGGCCTGATCGGATCGAGGAGGATAATGATGATCGTGAAGTCGGAGTTTCGTATTCCTCCTGTGGATGTTTCTTCGGATTCGGATCGAGGCTGTGTCGGAGCAGCAGTGTTCGATGCAGATATCTGCTGCTGCAACCGCATCGGGAGAACGAGGAGGAATTGGTGAAGCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCAAGGAGATTATAAAAGCTGTGGCGGGGCGGAAGTGGAGAAGCTTCATTAATGGAATAATTAACAAGAGACGGAGTGTGAGGTTCCAGTATGATCCGAGGAGTTATGCTCTGAATTTTGACGAAGGGATCGGAGAAGAAGGCGGCGGAGGTGGACTCCATGGTTTCAGGCCGCCCTCTGTGTCTCCGATCGGATTGGGGATTGGGATGAACAGAAGTGAAATATGA Protein sequence
MASSSSSSSSSSAIDEAFQRGPDRIEEDNDDREVGVSYSSCGCFFGFGSRLCRSSSVRCRYLLLQPHRENEEELVKQSWMMKKVKRFKEIIKAVAGRKWRSFINGIINKRRSVRFQYDPRSYALNFDEGIGEEGGGGGLHGFRPPSVSPIGLGIGMNRSEI
Homology
BLAST of Lag0004584 vs. NCBI nr
Match:
XP_022131993.1 (uncharacterized protein LOC111004972 [Momordica charantia])
HSP 1 Score: 228.0 bits (580), Expect = 5.7e-56
Identity = 126/161 (78.26%), Postives = 138/161 (85.71%), Query Frame = 0
Query: 3 SSSSSSSSSSAIDEAFQRGPDRIEEDNDDREVGV-SYSSCGCFFGFGSRLCRSS-SVRCR 62 +S SSS+SSS+IDE + DRIEED DDREVGV SYSSCGCFFGFGSR RSS VRCR Sbjct: 2 ASYSSSTSSSSIDETLR--TDRIEED-DDREVGVSSYSSCGCFFGFGSRQARSSDGVRCR 61 Query: 63 YLLLQPHRENEEELVKQSWMMKKVKRFKEIIKAVAGRKWRSFINGIINKRRSVRFQYDPR 122 YL LQPH E+ VKQSWMMKKVKRFKEIIKAVAGRKWRSFI+GII+K+RSVRFQYDPR Sbjct: 62 YLPLQPH----EDQVKQSWMMKKVKRFKEIIKAVAGRKWRSFISGIISKKRSVRFQYDPR 121 Query: 123 SYALNFDEGIGEEGGGGGLHGFRPPSVSPIGLGIGMNRSEI 162 SYALNFDEG GE+GGG G HGFR PS +PIGLGIGMNRS++ Sbjct: 122 SYALNFDEGSGEDGGGSGRHGFRAPSATPIGLGIGMNRSQV 155
BLAST of Lag0004584 vs. NCBI nr
Match:
XP_023537514.1 (uncharacterized protein LOC111798530 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 224.9 bits (572), Expect = 4.8e-55
Identity = 120/159 (75.47%), Postives = 135/159 (84.91%), Query Frame = 0
Query: 6 SSSSSSSAIDEAF---QRGPDRIEEDNDDREVGVSYSSCGCFFGFGSRLCRSSSVRCRYL 65 +SSSSSSAIDE F +RG +RIEE++ D EVGVSYSSCG FFGFGSRL RSSSVRCRY+ Sbjct: 2 ASSSSSSAIDETFRLEERGSNRIEEES-DLEVGVSYSSCGGFFGFGSRLSRSSSVRCRYV 61 Query: 66 LLQPHRENEEELVKQSWMMKKVKRFKEIIKAVAGRKWRSFINGIINKRRSVRFQYDPRSY 125 LQ + +EE V QSWMMKKVKRF+EI+KA+A KWRSFINGI+NKRRSVRFQYDPRSY Sbjct: 62 SLQTQQNDEE--VNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPRSY 121 Query: 126 ALNFDEGIGEEGGGGGLHGFRPPSVSPIGLGIGMNRSEI 162 ALNFD GIGE+GGGGG HG+ PPS P+GLGI MNRSEI Sbjct: 122 ALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 157
BLAST of Lag0004584 vs. NCBI nr
Match:
KAG7029494.1 (hypothetical protein SDJN02_07833, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 224.6 bits (571), Expect = 6.3e-55
Identity = 128/167 (76.65%), Postives = 135/167 (80.84%), Query Frame = 0
Query: 1 MASSSSSSSSSSAIDEAFQRGPDRIEEDND-DR-----EVGVSYSSCGCFFGFGSRLCRS 60 MASSS+ S +E R PDRIEE ND DR EVGVSYSSCGCFFGFGSRL RS Sbjct: 1 MASSSTIDDEISRSEEI--RAPDRIEEGNDRDRDLDLDEVGVSYSSCGCFFGFGSRLSRS 60 Query: 61 SSVRCRYLLLQPHRENEEELVKQSWMMKKVKRFKEIIKAVAGRKWRSFINGIINKRRSVR 120 SSVRC+YLLL RENEE VKQSWMMKKVKRFK+IIKA+AGRKWRSFINGI+NKRRSVR Sbjct: 61 SSVRCQYLLL---RENEE--VKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVR 120 Query: 121 FQYDPRSYALNFDEGIGEEGGGGGLHGFRPPSVSPIGLGIGMNRSEI 162 FQYDPRSYALNFDEGIGEE G GG HGFR P SPIGLG GMN S+I Sbjct: 121 FQYDPRSYALNFDEGIGEEEGRGGRHGFRQPFASPIGLGTGMNTSQI 160
BLAST of Lag0004584 vs. NCBI nr
Match:
XP_023002532.1 (uncharacterized protein LOC111496346 [Cucurbita maxima])
HSP 1 Score: 220.7 bits (561), Expect = 9.1e-54
Identity = 121/161 (75.16%), Postives = 136/161 (84.47%), Query Frame = 0
Query: 4 SSSSSSSSSAIDEAF---QRGPDRIEEDNDDREVGVSYSSCGCFFGFGSRLCRSSSVRCR 63 +SSSSSSSSAIDE F +RG +RIEE++ D EVGVSYSS G FF FGS L RSSSVRCR Sbjct: 2 ASSSSSSSSAIDETFRLEERGSNRIEEES-DLEVGVSYSSSGGFFEFGSWLSRSSSVRCR 61 Query: 64 YLLLQPHRENEEELVKQSWMMKKVKRFKEIIKAVAGRKWRSFINGIINKRRSVRFQYDPR 123 Y+ LQ R+N+EE V QSWMMKKVKRF+EII+A+A KWRSFINGI+NKRRSVRFQYDPR Sbjct: 62 YVSLQAQRQNDEE-VNQSWMMKKVKRFEEIIQAMARSKWRSFINGIVNKRRSVRFQYDPR 121 Query: 124 SYALNFDEGIGEEGGGGGLHGFRPPSVSPIGLGIGMNRSEI 162 SYALNFD GIGE+G GGG HG+ PPS SP+GLGI MNRSEI Sbjct: 122 SYALNFDHGIGEDGSGGGRHGYSPPSESPMGLGIRMNRSEI 160
BLAST of Lag0004584 vs. NCBI nr
Match:
KAG7020402.1 (hypothetical protein SDJN02_17086, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 217.6 bits (553), Expect = 7.7e-53
Identity = 123/164 (75.00%), Postives = 137/164 (83.54%), Query Frame = 0
Query: 1 MASSSSSSSSSSAIDEAF---QRGPDRIEEDNDDREVGVSYSSCGCFFGFGSRLCRSSSV 60 MASSSSSSSSSSAIDE +RG +RIEE++ D EVGVSYSS G FFGFGSRL R+SSV Sbjct: 1 MASSSSSSSSSSAIDETIRLEERGSNRIEEES-DLEVGVSYSSSGGFFGFGSRLSRNSSV 60 Query: 61 RCRYLLLQPHRENEEELVKQSWMMKKVKRFKEIIKAVAGRKWRSFINGIINKRRSVRFQY 120 RCRY+ LQ + +EE V QSWMMKKVKRF+EIIKA+A KWRSFINGI+NKRRSVRFQY Sbjct: 61 RCRYVSLQTPQNDEE--VNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQY 120 Query: 121 DPRSYALNFDEGIGEEGGGGGLHGFRPPSVSPIGLGIGMNRSEI 162 DPRSYALNFD GIGE+GGGGG HG+ PPS P+GLGI M RSEI Sbjct: 121 DPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM-RSEI 160
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022131993.1 5.7e-56 78.26 uncharacterized protein LOC111004972 [Momordica charantia] [more]
XP_023537514.1 4.8e-55 75.47 uncharacterized protein LOC111798530 [Cucurbita pepo subsp. pepo] [more]
KAG7029494.1 6.3e-55 76.65 hypothetical protein SDJN02_07833, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023002532.1 9.1e-54 75.16 uncharacterized protein LOC111496346 [Cucurbita maxima] [more]
KAG7020402.1 7.7e-53 75.00 hypothetical protein SDJN02_17086, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G C T T C T T C T T C T T C T T C T T C T T C T T C T T C T T C C G C C A T T G A T G A G G C C T T T C A G A G A G G G C C T G A T C G G A T C G A G G A G G A T A A T G A T G A T C G T G A A G T C G G A G T T T C G T A T T C C T C C T G T G G A T G T T T C T T C G G A T T C G G A T C G A G G C T G T G T C G G A G C A G C A G T G T T C G A T G C A G A T A T C T G C T G C T G C A A C C G C A T C G G G A G A A C G A G G A G G A A T T G G T G A A G C A G A G T T G G A T G A T G A A G A A G G T G A A G A G G T T C A A G G A G A T T A T A A A A G C T G T G G C G G G G C G G A A G T G G A G A A G C T T C A T T A A T G G A A T A A T T A A C A A G A G A C G G A G T G T G A G G T T C C A G T A T G A T C C G A G G A G T T A T G C T C T G A A T T T T G A C G A A G G G A T C G G A G A A G A A G G C G G C G G A G G T G G A C T C C A T G G T T T C A G G C C G C C C T C T G T G T C T C C G A T C G G A T T G G G G A T T G G G A T G A A C A G A A G T G A A A T A T G A 50 100 150 200 250 300 350 400 450 Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite PTHR33168:SF46 PTHR33168
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..16
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..31
None No IPR available PANTHER PTHR33168:SF46 NHL DOMAIN PROTEIN coord: 28..142
None No IPR available PANTHER PTHR33168 STRESS INDUCED PROTEIN-RELATED coord: 28..142
Relationships
The following mRNA feature(s) are a part of this gene: