Lag0004561 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004561
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEukaryotic translation initiation factor 5A
Locationchr6: 4950521 .. 4952461 (-)
RNA-Seq ExpressionLag0004561
SyntenyLag0004561
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGACGAAGAGCATCAGTTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAAGCCGGAACCATCCGTAAGAATGTTACATTGTCATCAAGGCGTCCTGCAAGGTAACCCATTACAATTTCTCTGGTCTCACACTTCTTCGTGCTTATACATGATGTTTGTTTATGCGTTTGGTATATTTTCCTTTTTAGATGCAATGGTGGTTTATGATTCATGGAGGCTGCTTTTAGATTTACAAAAATGAATGTCTGTGTAAATAACAGAGTGGTGGATTGTCTATGGTTAGTAGAATTTGATTGAGAAGAGATTTTAATCGCCGGTGTTGATTGTTTGTTTTCAGTAGATTTCCTACAAGATTTTAGGAATTCGGATGTATTTCAATTTGGATTTTGTTCTAGAATGGAGTTTTTCTCTTATATCATATGGTTTAACCCATCAATAGTTGCGTTTTTTTTAATGATTTCTTTAATTTTATAAGCTTGTGAAATATAATATTTCAAAAAATCTACTACTGATTGGATTGGTGTTAAATTGCATCCATAATTTGATGCTAAATTTCTAACCAGGGTGACTAAATGTTATCTTTGTTTAAGGAGACTGTAGCTGATCTATTGTTTGTTTCAATAGACTTCAAATTCTTTTTTTTAGTTAAACATGTGTGGCGGAGAGAATTGAATCTACAATCTCGTAGTTGAAGCTATATGTTATTAGGTCTCAAGTTGTGAATGTATATGCTAGAAAGAGTAAAAAAGGTAAATCGAGAGAAAGTTAGTTTGAATTAGGACGTGTTTGCCTATTTTGGGGTTATCGGTAGGAGGGTGAAAGTTATTCGTTATCTTGGGATTTGTAGAGCGATTTTGGGAGAGAAACAACCCTCTCGAATTGGCTAAGCATTGTCACTCTGTCTCTACTTTACAAATAAAGTTTTCCAAATACCATACGTTTTAACTAGTTGAGCAAAGCATTAAATGGTTCTCTTTCCATACCTTGTTAGAGCAGTAAAAAAAACTCAACTCTAGTTCTACTAATTCTTCATTCAAAGGGCAAGGTTTGAGAAGTCTTCTTTATGTTCTATGAAAGAAATAGCCAACAGGCATAACTGTGTAGGAACTTTGATCTTCATATTATTCATATTAATGTCCTAAATGGTATTATGTTAAAGTAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCACGGGCATGCTAAGTGTCACTTTGTGGCAATTGATATATTCACTGCTAAAAAGCTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTGAGTATTCATTTATCTTCTTTGCTCATCTTTTTAGTGATTTTTGTGTATCTAAATGTCAGGTTTGTATGGTTGCTTTGTGTCTCACATTCTCCACATTCTCTGTATAGGTTCCTGAGGTTACTCGTACTGATTATCAGCTTATCGACATCTCCGAAGATGGATTTGTGAGTTTCTTTCTCACTATTTTTTATTTGAGTAGGCAGATTTAGGTTTACAAGGGAATTCATCACATGTTTTTATGTTGATTCAAACTTAGTCATCATATTCTTTTAACTTAATACTAAACAGAGATTCACCCATTCAAGAATATGACAAGTTCATATCCATTGACCAACTGAAATCTGGTTTGTTGTTAGGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGGTTCCTACTGATGAAAGTTTACTTGCTCAGGTAAGGTTCTTCTGCACATACTGGTTTCCTAAATACACAACACATGTTTCCAAGCAAAGCAATAACTAGCTTTTCACACGCTTCATGCATCTGTTTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTCGTGAGTGTCATGTATGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAATTGA

mRNA sequence

ATGTCCGACGAAGAGCATCAGTTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAAGCCGGAACCATCCGTAAGAATGTTACATTGTCATCAAGGCGTCCTGCAAGGTCTCAAGTTGTGAATGTATATGCTAGAAAGAGTAAAAAAGTTGAGGTTTCTACATCCAAGACTGGAAAGCACGGGCATGCTAAGTGTCACTTTGTGGCAATTGATATATTCACTGCTAAAAAGCTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTTCCTGAGGTTACTCGTACTGATTATCAGCTTATCGACATCTCCGAAGATGGATTTGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGGTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTCGTGAGTGTCATGTATGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAATTGA

Coding sequence (CDS)

ATGTCCGACGAAGAGCATCAGTTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAAGCCGGAACCATCCGTAAGAATGTTACATTGTCATCAAGGCGTCCTGCAAGGTCTCAAGTTGTGAATGTATATGCTAGAAAGAGTAAAAAAGTTGAGGTTTCTACATCCAAGACTGGAAAGCACGGGCATGCTAAGTGTCACTTTGTGGCAATTGATATATTCACTGCTAAAAAGCTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTTCCTGAGGTTACTCGTACTGATTATCAGCTTATCGACATCTCCGAAGATGGATTTGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGGTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTCGTGAGTGTCATGTATGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAATTGA

Protein sequence

MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPKN
Homology
[Close]
BLAST of Lag0004561 vs. NCBI nr
Match: XP_008445267.1 (PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP_038884938.1 eukaryotic translation initiation factor 5A-4-like [Benincasa hispida])

HSP 1 Score: 283.9 bits (725), Expect = 9.3e-73
Identity = 147/171 (85.96%), Postives = 150/171 (87.72%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEH FESKADAGASKTFPQQAGTIRKN             + +  R  K VEVSTSK
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKN-----------GYIVIKGRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG
Sbjct: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPKN 172
           STKDDLR+PTDESLLAQIKDGFAEGKDLVVSVM AMGEEQICGLKDIGPKN
Sbjct: 121 STKDDLRLPTDESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]
BLAST of Lag0004561 vs. NCBI nr
Match: XP_022962181.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_023545516.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6598545.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029478.1 Eukaryotic translation initiation factor 5A-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-71
Identity = 145/171 (84.80%), Postives = 149/171 (87.13%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEHQFESKADAGASKTFPQQAGTIRKN  L            +  R  K VEVSTSK
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLV-----------IKGRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG
Sbjct: 61  TGKHGHAKCHFVAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPKN 172
           STKDDLR+PTD+SLL QIKDGFAEGKDLVVSVM AMGEEQICGLKDIGPK+
Sbjct: 121 STKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160

[Close]
BLAST of Lag0004561 vs. NCBI nr
Match: XP_004138702.1 (eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN62994.1 hypothetical protein Csa_022421 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-71
Identity = 144/171 (84.21%), Postives = 148/171 (86.55%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEH FESKADAGASKTFPQQAGTIRKN             + +  R  K VEVSTSK
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKN-----------GYIVIKGRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KK+EDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPKN 172
           STKDDLR+PTDESLL QIKDGFAEGKDLVVSVM AMGEEQICGLKDIGPKN
Sbjct: 121 STKDDLRLPTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]
BLAST of Lag0004561 vs. NCBI nr
Match: XP_010101033.1 (eukaryotic translation initiation factor 5A-4 [Morus notabilis] >EXB86681.1 Eukaryotic translation initiation factor 5A-4 [Morus notabilis])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 140/171 (81.87%), Postives = 147/171 (85.96%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEH FESKADAGASKT+PQQAGTIRKN             + +  R  K VEVSTSK
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKN-----------GYIVIKGRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG
Sbjct: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPKN 172
           +TKDDLR+PTDE+LL+QIKDGFAEGKDLVVSVM AMGEEQIC LKDIGPKN
Sbjct: 121 NTKDDLRLPTDEALLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of Lag0004561 vs. NCBI nr
Match: XP_019262325.1 (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Nicotiana attenuata] >OIT37890.1 eukaryotic translation initiation factor 5a-2 [Nicotiana attenuata])

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-69
Identity = 141/170 (82.94%), Postives = 146/170 (85.88%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKN             + + AR  K VEVSTSK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKN-----------GYIVIKARPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPK 171
           STKDDLR+PTDESLL QIKDGFAEGKDLVVSVM AMGEEQIC LKDIGPK
Sbjct: 121 STKDDLRLPTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Lag0004561 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.2e-70
Identity = 138/170 (81.18%), Postives = 146/170 (85.88%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKN            +V +  R  K VEVSTSK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKN----------GHIV-IKGRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPK 171
           +TKDDLR+PTD++LL QIKDGFAEGKDLVVSVM AMGEEQIC LKDIGPK
Sbjct: 121 NTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Lag0004561 vs. ExPASy Swiss-Prot
Match: P56336 (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.5e-70
Identity = 138/170 (81.18%), Postives = 145/170 (85.29%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEHQFESKADAGASKT+PQQAGTIRK           S  + +  R  K VEVSTSK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRK-----------SGYIVIKGRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPK 171
           +TKDDLR+PTD+SLL+QIKDGFAEGKDLVVSVM AMGEEQI  LKDIGPK
Sbjct: 121 NTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]
BLAST of Lag0004561 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.9e-70
Identity = 135/170 (79.41%), Postives = 146/170 (85.88%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEH FESKADAGASKT+PQQAGTIRK           S  + +  R  K VEVSTSK
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRK-----------SGHIVIKNRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPK 171
           +TKDDLR+PTD++LLAQ+KDGFAEGKDLV+SVM AMGEEQICG+KDIGPK
Sbjct: 121 NTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of Lag0004561 vs. ExPASy Swiss-Prot
Match: Q9AXQ6 (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-69
Identity = 135/170 (79.41%), Postives = 146/170 (85.88%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEH FESKADAGASKT+PQQAGTIRK             +V +  R  K VEVSTSK
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKG----------GHIV-IKNRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPK 171
           +TKDDLR+PTD++LLAQ+KDGFAEGKDLV+SVM AMGEEQICG+KDIGPK
Sbjct: 121 NTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of Lag0004561 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-69
Identity = 135/170 (79.41%), Postives = 146/170 (85.88%), Query Frame = 0 

Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSK 60
           MSDEEH FESKADAGASKT+PQQAGTIRKN            +V +  R  K VEVSTSK
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKN----------GHIV-IKNRPCKVVEVSTSK 60

Query: 61  TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNG 120
           TGKHGHAKCHFVAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG
Sbjct: 61  TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENG 120

Query: 121 STKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPK 171
           +TKDDLR+PTD++LLA IKDGFAEGKDLV+SVM AMGEEQICG+KD+GPK
Sbjct: 121 NTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

The following BLAST results are available for this feature:
BLAST of Lag0004561 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445267.19.3e-7385.96PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP... [more]
XP_022962181.11.8e-7184.80eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0235... [more]
XP_004138702.11.8e-7184.21eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN62994.1 hypo... [more]
XP_010101033.11.6e-6981.87eukaryotic translation initiation factor 5A-4 [Morus notabilis] >EXB86681.1 Euka... [more]
XP_019262325.12.1e-6982.94PREDICTED: eukaryotic translation initiation factor 5A-2-like [Nicotiana attenua... [more]
BLAST of Lag0004561 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P249221.2e-7081.18Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40... [more]
P563364.5e-7081.18Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EI... [more]
P563375.9e-7079.41Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
Q9AXQ61.3e-6979.41Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE... [more]
P690391.7e-6979.41Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 96..165
e-value: 2.3E-30
score: 116.9
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 97..165
e-value: 1.1E-27
score: 95.9
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..96
e-value: 1.7E-27
score: 97.1
NoneNo IPR availableGENE3D2.40.50.140coord: 97..170
e-value: 2.6E-33
score: 115.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 1..167
NoneNo IPR availableCDDcd04468S1_eIF5Acoord: 97..167
e-value: 2.0382E-30
score: 103.771
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 41..163
e-value: 4.1E-31
score: 105.5
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..168
e-value: 5.2E-51
score: 170.2
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 1..167
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 61..68
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 44..104
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 97..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004561.1Lag0004561.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding