Lag0004558 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004558
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUbiquitin
Locationchr6: 4925801 .. 4926438 (+)
RNA-Seq ExpressionLag0004558
SyntenyLag0004558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAGAGCGTCGATCGATTCTCGAAAATCCGCCATCGTCAATGGAGACTCGAAGGCTGAGGCTAAATTTCAAAATCTGGTGCGAGATTTCTTGGAAGTCCAGAAGGTTCGAGTTCTTCTTTCGAATTTGTAGAGTGTTTTGAGGAAGCTCTTGTGTGGTACGATTGAAGGAAAGATGATTTTGAGATTTTTTTTTTCTTGTAGGAATTTGTCTCGAAGAAGAGAAAGTTGCAGGTTCTGAAACAGAGGAAGGAGATTCTTGAAGATGAAGTTGGGTACGAATTGATCTCTCGACTTCTTCAAGCATACAGCTCTCTAATGGTGTTTCTGATTTTTTTGGAACAGATTCTTGAGACGAAGGTGCAGATATCTGCAGAAATTGCAGAACCGTAATCGTGATTTAGAAAACTCGTCCATGGTTTTGGAATCGAAGCAGAATCTGGTAAACAAATCGATAAGGAATTTCTTTCTTTTTCACAATGGATTGATCAATAAATTTTAATGGAGGACTGTGATTAATTGCAGGGTGCGGAGGAAGAAGAAGCTTTGATGACGAAGGAGAAGCCTGGTTTAGTGTGCTTGAAGAGTGGTTGTTTTTGTAAATTTGTTCATCAACTCAACTTTCCAGAATAA

mRNA sequence

ATGAAGAAGAGAGCGTCGATCGATTCTCGAAAATCCGCCATCGTCAATGGAGACTCGAAGGCTGAGGCTAAATTTCAAAATCTGGTGCGAGATTTCTTGGAAGTCCAGAAGGAATTTGTCTCGAAGAAGAGAAAGTTGCAGGTTCTGAAACAGAGGAAGGAGATTCTTGAAGATGAAGTTGGATTCTTGAGACGAAGGTGCAGATATCTGCAGAAATTGCAGAACCGTAATCGTGATTTAGAAAACTCGTCCATGGTTTTGGAATCGAAGCAGAATCTGGGTGCGGAGGAAGAAGAAGCTTTGATGACGAAGGAGAAGCCTGGTTTAGTGTGCTTGAAGAGTGGTTGTTTTTGTAAATTTGTTCATCAACTCAACTTTCCAGAATAA

Coding sequence (CDS)

ATGAAGAAGAGAGCGTCGATCGATTCTCGAAAATCCGCCATCGTCAATGGAGACTCGAAGGCTGAGGCTAAATTTCAAAATCTGGTGCGAGATTTCTTGGAAGTCCAGAAGGAATTTGTCTCGAAGAAGAGAAAGTTGCAGGTTCTGAAACAGAGGAAGGAGATTCTTGAAGATGAAGTTGGATTCTTGAGACGAAGGTGCAGATATCTGCAGAAATTGCAGAACCGTAATCGTGATTTAGAAAACTCGTCCATGGTTTTGGAATCGAAGCAGAATCTGGGTGCGGAGGAAGAAGAAGCTTTGATGACGAAGGAGAAGCCTGGTTTAGTGTGCTTGAAGAGTGGTTGTTTTTGTAAATTTGTTCATCAACTCAACTTTCCAGAATAA

Protein sequence

MKKRASIDSRKSAIVNGDSKAEAKFQNLVRDFLEVQKEFVSKKRKLQVLKQRKEILEDEVGFLRRRCRYLQKLQNRNRDLENSSMVLESKQNLGAEEEEALMTKEKPGLVCLKSGCFCKFVHQLNFPE
Homology
BLAST of Lag0004558 vs. NCBI nr
Match: XP_022132126.1 (uncharacterized protein LOC111005070 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-21
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 3   KRASIDSRKSAIVNGDSKAEAKFQNLVRDFLEVQKEFVSKKRKLQVLKQRKEILEDEVGF 62
           KRASI SRKSAIV+ +S+A  K+Q L++DFLEVQK+FVSKKRKLQVL+QRKE L  EV F
Sbjct: 7   KRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETLGAEVRF 66

Query: 63  LRRRCRYLQKLQNRNRD--LENSSMVLESKQNLGAEEEEALMTK 105
           LR+R  YLQKLQNR  D   E+  MVLE+KQNL   EEE    K
Sbjct: 67  LRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNK 110

BLAST of Lag0004558 vs. NCBI nr
Match: XP_038884216.1 (uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-16
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 33  LEVQKEFVSKKRKLQVLKQRKEILEDEVGFLRRRCRYLQKLQNRNRDLENSSMVLESKQN 92
           LE+QKE VSK RKL+VLKQRKE LEDEVGFLRRR  YLQKLQNR+ DLEN  MVLESKQN
Sbjct: 47  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHDLENLPMVLESKQN 106

Query: 93  LGAEEEEALMTKEKP 108
           L   EE+    KEKP
Sbjct: 107 LDGVEED----KEKP 117

BLAST of Lag0004558 vs. NCBI nr
Match: XP_038884217.1 (uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 33  LEVQKEFVSKKRKLQVLKQRKEILEDEVGFLRRRCRYLQKLQNRNRDLENSSMVLESKQN 92
           LE+QKE VSK RKL+VLKQRKE LEDEVGFLRRR  YLQKLQNR+ DLEN  MVLESKQN
Sbjct: 47  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHDLENLPMVLESKQN 106

Query: 93  L 94
           L
Sbjct: 107 L 107

BLAST of Lag0004558 vs. NCBI nr
Match: KAE8056256.1 (hypothetical protein FH972_013043 [Carpinus fangiana])

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-09
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 3  KRASIDSRKSAIVNGDSKAEAKFQNLVRDFLEVQKEFVSKKRKLQVLKQRKEILEDEVGF 62
          KR S+DS +S  +N ++KA+ K+QNL+ ++LE+QKEFVSKKRKLQ  K  +E L  EV F
Sbjct: 6  KRVSMDSHQSRPMNVEAKAKLKYQNLLHEYLELQKEFVSKKRKLQTAKLYRENLLSEVRF 65

Query: 63 LRRRCRYLQKLQN 76
          LRRR +YL K Q+
Sbjct: 66 LRRRRKYLLKSQS 78

BLAST of Lag0004558 vs. NCBI nr
Match: XP_021608878.1 (uncharacterized protein LOC110612406 [Manihot esculenta] >XP_021608879.1 uncharacterized protein LOC110612406 [Manihot esculenta] >KAG8656803.1 hypothetical protein MANES_03G008000v8 [Manihot esculenta] >OAY53586.1 hypothetical protein MANES_03G008000v8 [Manihot esculenta] >OAY53587.1 hypothetical protein MANES_03G008000v8 [Manihot esculenta])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 18  DSKAEAKFQNLVRDFLEVQKEFVSKKRKLQVLKQRKEILEDEVGFLRRRCRYLQKLQNRN 77
           + K + K Q+L++DFLE QKEFVSKK+KLQ+ KQ+++IL  E+ FLR+R RYL  +++ N
Sbjct: 14  EDKFKLKHQSLLQDFLEFQKEFVSKKKKLQMTKQKRDILSTEIRFLRQRYRYLMAMKSHN 73

Query: 78  RDLENSSMVLESKQNLGAEEEEALMTKEKP 108
             L+      E+      +  + L TK+KP
Sbjct: 74  LQLQQDPAPPENSSMQSEDIRKLLSTKKKP 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132126.14.7e-2165.38uncharacterized protein LOC111005070 [Momordica charantia][more]
XP_038884216.12.7e-1674.67uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida][more]
XP_038884217.11.5e-1481.97uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida][more]
KAE8056256.14.2e-0956.16hypothetical protein FH972_013043 [Carpinus fangiana][more]
XP_021608878.11.2e-0843.33uncharacterized protein LOC110612406 [Manihot esculenta] >XP_021608879.1 unchara... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..66
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availablePANTHERPTHR34807:SF6SUBFAMILY NOT NAMEDcoord: 3..99
NoneNo IPR availablePANTHERPTHR34807OS08G0270800 PROTEINcoord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004558.1Lag0004558.1mRNA