Lag0004554 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004554
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMaturase MatK, N-terminal domain-containing protein
Locationchr6: 4888113 .. 4888679 (-)
RNA-Seq ExpressionLag0004554
SyntenyLag0004554
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCCGTTTCACACGGTTTGTTCCCCTATAGGTGGGTGTACTGGACAAAGGTGGGATTGCTAGTTCCGCGAAACATGGATGACAATGGACCCGTTAGACATGGCTATCGCTCCAAAACAACCTCAGGAAAGCAGCCCCTACTACTGCTTTCCTCCCTGAAGCATCCGGTTAGGCAGCCCACCCCTAAAAATAGGGCGCAGGCAAATGGGATGCTTCACATGCTTCCTTGCGTTGGATGGGCCGATGGCGGGCGAGCCATTCGAAAAAGGGAGAAATTTGCACTACTTGGTGAAAGAGGTTCTTTTAGAATCAATTTCAAACCATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCAGCTGGAACTGCTATGTACGTTTTCGATTTTCTATTCATCGACCATTTATTTGTGTTTAAGTTTCTACATATTGAAGCTAGAACTTTAATGCTATAG

mRNA sequence

ATGGCCACCGCCGTTTCACACGGTTTGTTCCCCTATAGGTGGGTGTACTGGACAAAGGTGGGATTGCTAGTTCCGCGAAACATGGATGACAATGGACCCGTTAGACATGGCTATCGCTCCAAAACAACCTCAGGAAAGCAGCCCCTACTACTGCTTTCCTCCCTGAAGCATCCGGTTAGGCAGCCCACCCCTAAAAATAGGGCGCAGGCAAATGGGATGCTTCACATGCTTCCTTGCGTTGGATGGGCCGATGGCGGGCGAGCCATTCGAAAAAGGGAGAAATTTGCACTACTTGGTGAAAGAGGTTCTTTTAGAATCAATTTCAAACCATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCAGCTGGAACTGCTATGTACGTTTTCGATTTTCTATTCATCGACCATTTATTTGTGTTTAAGTTTCTACATATTGAAGCTAGAACTTTAATGCTATAG

Coding sequence (CDS)

ATGGCCACCGCCGTTTCACACGGTTTGTTCCCCTATAGGTGGGTGTACTGGACAAAGGTGGGATTGCTAGTTCCGCGAAACATGGATGACAATGGACCCGTTAGACATGGCTATCGCTCCAAAACAACCTCAGGAAAGCAGCCCCTACTACTGCTTTCCTCCCTGAAGCATCCGGTTAGGCAGCCCACCCCTAAAAATAGGGCGCAGGCAAATGGGATGCTTCACATGCTTCCTTGCGTTGGATGGGCCGATGGCGGGCGAGCCATTCGAAAAAGGGAGAAATTTGCACTACTTGGTGAAAGAGGTTCTTTTAGAATCAATTTCAAACCATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCAGCTGGAACTGCTATGTACGTTTTCGATTTTCTATTCATCGACCATTTATTTGTGTTTAAGTTTCTACATATTGAAGCTAGAACTTTAATGCTATAG

Protein sequence

MATAVSHGLFPYRWVYWTKVGLLVPRNMDDNGPVRHGYRSKTTSGKQPLLLLSSLKHPVRQPTPKNRAQANGMLHMLPCVGWADGGRAIRKREKFALLGERGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFIDHLFVFKFLHIEARTLML
Homology
[Close]
BLAST of Lag0004554 vs. NCBI nr
Match: PPD71372.1 (hypothetical protein GOBAR_DD31748 [Gossypium barbadense])

HSP 1 Score: 154.5 bits (389), Expect = 9.4e-34
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 87  RAIRKREKFALLGERGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTKKATP 146
           RAI KREK ALLGE GSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITL SASTKKATP
Sbjct: 116 RAILKREKLALLGEIGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLHSASTKKATP 175

Query: 147 SRSGRIIPSISAGTAMYVFDFLFIDHL 174
           S+SGRIIPSISAGTAMYVFDFLF   L
Sbjct: 176 SKSGRIIPSISAGTAMYVFDFLFTHDL 202

[Close]
BLAST of Lag0004554 vs. NCBI nr
Match: KAD2152081.1 (hypothetical protein E3N88_41733 [Mikania micrantha])

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-32
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0 

Query: 83  ADGGRAIRKREKFALLGERGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTK 142
           +   +AI KREKFALLGE GSF IN KPSARGCNNPNDPTT GPF+RCTKAITLRSASTK
Sbjct: 98  SSSAKAILKREKFALLGEIGSFIINLKPSARGCNNPNDPTTLGPFQRCTKAITLRSASTK 157

Query: 143 KATPSRSGRIIPSISAGTAMYVFDFLFIDHL 174
           KATPSRSGRIIPSISAGTAMY+FDFLF   L
Sbjct: 158 KATPSRSGRIIPSISAGTAMYIFDFLFTHDL 188

[Close]
BLAST of Lag0004554 vs. NCBI nr
Match: YP_009526579.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54338.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 144.8 bits (364), Expect = 7.4e-31
Identity = 91/178 (51.12%), Postives = 103/178 (57.87%), Query Frame = 0 

Query: 11  PYRWVYWTKVGLLVPRNMDDNGPVRHGYRSKTTSGKQPLLLLSSLKHP---------VRQ 70
           P RWV  +   LL     D  G          T+ ++  +   S KH          + +
Sbjct: 76  PRRWVICSHKFLL---QSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVGRWLPK 135

Query: 71  PTPKNRAQANGMLHMLPCVGWADGGRAIR-----------KREKFALLGERGSFRINFKP 130
            TP   A   G ++++P        RA R           KREK ALLGE GSFRINFKP
Sbjct: 136 ETPIRSAPQLGGIYLIPITRRGTTARATRLNINVATGAILKREKLALLGEIGSFRINFKP 195

Query: 131 SARGCNNPNDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL 169
           SARGCNNPNDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAM    F+
Sbjct: 196 SARGCNNPNDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMDDLPFI 250

[Close]
BLAST of Lag0004554 vs. NCBI nr
Match: KAD5508508.1 (hypothetical protein E3N88_16211 [Mikania micrantha])

HSP 1 Score: 137.9 bits (346), Expect = 9.1e-29
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 88  AIRKREKFALLGERGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTKKATPS 147
           AI K EKFALLGE GSF IN KP ARGCNNPN+PTTSGPFRRCTKAITLRSASTKKATPS
Sbjct: 228 AILKGEKFALLGEIGSFIINLKPPARGCNNPNNPTTSGPFRRCTKAITLRSASTKKATPS 287

Query: 148 RSGRIIPSISAGTAMYVFDFLFI 171
           RSGRII SISAGT MY+FDFL +
Sbjct: 288 RSGRIILSISAGTVMYIFDFLLM 310

[Close]
BLAST of Lag0004554 vs. NCBI nr
Match: CAB4273496.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-19
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 88  AIRKREKFALLGERGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTKK 144
           AI KREK ALLGE GSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTK+
Sbjct: 123 AILKREKLALLGEIGSFRINFKPSARGCNNPNDPTTSGPFRRCTKAITLRSASTKR 178

The following BLAST results are available for this feature:
BLAST of Lag0004554 vs. NCBI nr
Match NameE-valueIdentityDescription
PPD71372.19.4e-3490.80hypothetical protein GOBAR_DD31748 [Gossypium barbadense][more]
KAD2152081.13.0e-3283.52hypothetical protein E3N88_41733 [Mikania micrantha][more]
YP_009526579.17.4e-3151.12hypothetical protein [Ammopiptanthus mongolicus] >AXV54338.1 hypothetical protei... [more]
KAD5508508.19.1e-2985.54hypothetical protein E3N88_16211 [Mikania micrantha][more]
CAB4273496.12.9e-1992.86unnamed protein product [Prunus armeniaca][more]
BLAST of Lag0004554 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004554.1Lag0004554.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane