Lag0004485 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004485
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerase subunit
Locationchr6: 4319965 .. 4322796 (-)
RNA-Seq ExpressionLag0004485
SyntenyLag0004485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTATATGGAAGAAGAGATACCTCAAGAAGGTTAAATTCTTCATTTGGGATGTTGATCTTGGTAGTTAACACTACAAATATGTTTCAACAAAAGATTCCTGGCATTTGTCTTAATCCGGGCTAGTGTAATATGTGGAAGAAATCTTCAAGATCATGAGCAAGTACAGCCGAAGAATTCTGACCTCTAGAAGACGTGATTTCTGACTTCATTTCATCTCAATATTGTAGGTGGATTGGAAATTAGAGGAACTTCTTTCATTAACAACAAAGCTTGTACTACATGCATAACATATTCAAAAGCAAGTCGCCACAAAAGTAGGCCCAGGGGCTGGAGTAGAGGAAAATCTCGCCGGAGCTACAAAAGAGAAGAGCCTACCAATTTTTTATGGTTTGTATACCACCTAGAGCCAGCATGTTGCACACTATTACAAAAAGAACTCTTATCTCCGAAGATATATGGTTTCGCTTGATCCAAAGATGCCAAAGGAGGCCTTCAGTTGCGCTGTTCTATATGATCTTAGCTTTGCGTTAAAACAGCCCAGGGAACCTCCATTAGCCAATCCTCCACCTGTCTAGGTTGGCATATAGGCGAGCCAAGTTTGCTCAAAATGAAAGACCACCCCACCAGAGACAAAGGGGGCAGTGAAGGAAAAGGTGATCCTAAGATTCGCCCTCCTTGTACCAAAAGCAAAAGCAGCACACCGAGGGGGACAAAGGCCCATTTTGGAAACTTCCTTTGCAGTTTGTCTAGAGTATTGAGACTCCAATAAGCTACTACATTTTGCTACAAGTGAGGCTTTATTACCTGGAACTCAGTGACGAGCCACCAATATGTTACGCATATATTAGGCACAATACCAGCATAGGCAACACTGTATCAAGTAATGAGTATAAGTTATAATCAAGCAGTATTTATGTTAAATTTCTGGTACCATTTAATAGCATCAATACAAATTGTAGAAACCTCTTGTTGATAATTTATGGAAAGGAATTACATAGTTAGATTTTCAAGAGGTCTGGAATCTCTCACAAGCTCCCAACCATTTTCCAGATGCCCTTCGTCTCTCTTAGGTACTTCATAAAAAGATACATAATTTCCTTTTACGTGTGAGAACTAACTCAACCCCTATCTCCAATGTAAGTACCTCAGAAACAACTAATTACAAAAATTAACATAAATACTGCTTAATTATGACTTCTACTTGCAGAAATTAACGTAAATACTGCTTGACTGACTTCTACTCATCCCTTGATATGGTATTGTCTGTCTTTGCTAGTATCGTGCCTAATGTATGTGTGACATATTGGTGGCCTATCTTAAATCTCATCCAGAAAGAATGCCTGCATAGTAAAGACGGGCTTCTATAAATGAAATTGAATGTTTCTTGATTACAATTACATGAAGAAATGACTGAACTACGTATTACAGTGTCTCTGGGACTGAGCACTAACTTCTAACAGCTTAGCTAGGAGTTGTGGCAAGCTTGCCTTTTTGCCATTGTGGGGGTATTTGGCTAGAAAGGACCAATAAGATTTTTAGAGGTGTTAAAGAGATCTAGAGTCGAGCTTTAAGAGTTGGTTAGATTTAACACTTCGATATGGATGTCCATTAATTAGTTTTTTTTTTTTTTTTTTGTAATTACCAGCTTGGTCTCATTCTCTTAGATTGGGGTCCCTTCCAATAATTAGGACTCGGGATCCTTTTGGTGGGTTTTTTAAATGCCAGTACATTCTTCCATATGTCTCAACAAAAGCTCGGTTTCCTACTTAAAAAGAAAGAACAGCTAAGCAGTGACTGAAAATTGTTGAACTCAACAAAATACTCGGACTGGTTTGTCTTATTAAAGGGCCTGAGTGCTATCACGAGCTGCCTTATTGTTATTCTACTTCTTGAAGTTTGTGTCCGAAGGATATACATCAAATTATTTTAGAATTTGAGAGTTTTACGTTTAATGGTTTTGTTGAAAGAAGTATGCATCTTATTATCTTCACGTATTGAAATTGAAAAAATTGTAATCCCCATCTTTGTTTCCATGATCTGAGATATTGAAGTCGTGTAAATGCAGTTGAGAAATTATTGTTTTAATATTTTATGCACTCTTTTAGTAGACATCTCTAACATTTGTTCGGCTTATTTCAGAGGTCATCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTAAATGATAAATATCATCCCCATGCTTCTTCTATTTCTAGCTCTAAGACATAGTATCATCTCTGCAACACGTCATTGACGGTGTTTATGAACTTTAGGATACTCTGGAAATTTCTGCTACATTTTTTTATATTTGCTAGGATTGTTTCTGGTTGAACCAAGGAGGAATCTGTATATTGGGTTGAATAAGAAACTGGGACCAACCCACCTCAAGCCATGATCTAATCTTGATATGCCTTTTGTGAAAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGTAGTAGGAGGAGGAAAAGAAGTCTATAATCTGATATTGTGCTTGGGATGTGTAGCTAGTCCACTAATATCAAGATGTGTCTTGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGTTCTATTTCAATAAAAATGCAGATGAGATCAGCTGATGAAGGGCAGACCACCTTTTATACCTGCACCAAGTGCCATCATCAGACCAGAGAGAATTGA

mRNA sequence

ATGAAAGTTATATGGAAGAAGAGATACCTCAAGAAGGTTAAATTCTTCATTTGGGATGTTGATCTTGGTGGATTGGAAATTAGAGGAACTTCTTTCATTAACAACAAAGCTTGTACTACATGCATAACATATTCAAAAGCAAGTCGCCACAAAACCCAGGGAACCTCCATTAGCCAATCCTCCACCTGTCTAGGTTGGCATATAGGCGAGCCAAGTTTGCTCAAAATGAAAGACCACCCCACCAGAGACAAAGGGGGCAGTGAAGGAAAAGGTGATCCTAAGATTCGCCCTCCTTGTACCAAAAGCAAAAGCAGCACACCGAGGGGGACAAAGGCCCATTTTGGAAACTTCCTTTGCAAGGTCATCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCAGCTGATGAAGGGCAGACCACCTTTTATACCTGCACCAAGTGCCATCATCAGACCAGAGAGAATTGA

Coding sequence (CDS)

ATGAAAGTTATATGGAAGAAGAGATACCTCAAGAAGGTTAAATTCTTCATTTGGGATGTTGATCTTGGTGGATTGGAAATTAGAGGAACTTCTTTCATTAACAACAAAGCTTGTACTACATGCATAACATATTCAAAAGCAAGTCGCCACAAAACCCAGGGAACCTCCATTAGCCAATCCTCCACCTGTCTAGGTTGGCATATAGGCGAGCCAAGTTTGCTCAAAATGAAAGACCACCCCACCAGAGACAAAGGGGGCAGTGAAGGAAAAGGTGATCCTAAGATTCGCCCTCCTTGTACCAAAAGCAAAAGCAGCACACCGAGGGGGACAAAGGCCCATTTTGGAAACTTCCTTTGCAAGGTCATCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCAGCTGATGAAGGGCAGACCACCTTTTATACCTGCACCAAGTGCCATCATCAGACCAGAGAGAATTGA

Protein sequence

MKVIWKKRYLKKVKFFIWDVDLGGLEIRGTSFINNKACTTCITYSKASRHKTQGTSISQSSTCLGWHIGEPSLLKMKDHPTRDKGGSEGKGDPKIRPPCTKSKSSTPRGTKAHFGNFLCKVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Homology
[Close]
BLAST of Lag0004485 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 154.8 bits (390), Expect = 7.5e-34
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           ++IG+EISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EIIGREISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 121 VIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQ 180
           +IG+EISYTVTAEEIRKQLGISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQ
Sbjct: 41  IIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQ 100

Query: 181 TTFYTCTKCHHQTREN 197
           TTFYTCTKCHHQTREN
Sbjct: 101 TTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. NCBI nr
Match: XP_038886279.1 (DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886280.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886281.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886282.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-33
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           ++IG+EISYTVTAEEIRKQLGISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EIIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata])

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           +++G+EISYTVTAEEIRKQLGISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EIVGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           +++G+EISYTVTAEEIRKQLGISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 70  EIVGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEG 129

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 130 QTTFYTCTKCHHQTREN 146

[Close]
BLAST of Lag0004485 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-08
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 123 GKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTT 182
           GK +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT 
Sbjct: 49  GKVVKTSVVFNKLGTAMPLSMEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTV 108

Query: 183 FYTCTKCHHQTREN 197
           FYTCT C  Q +E+
Sbjct: 109 FYTCTNCKFQEKED 122

[Close]
BLAST of Lag0004485 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-08
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 123 GKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTT 182
           GK +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT 
Sbjct: 52  GKVVKTSVVFHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTV 111

Query: 183 FYTCTKCHHQTREN 197
           FYTCT C  Q +E+
Sbjct: 112 FYTCTNCKFQEKED 125

[Close]
BLAST of Lag0004485 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-08
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 123 GKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTT 182
           GK +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT 
Sbjct: 52  GKVVKTSVVFHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTV 111

Query: 183 FYTCTKCHHQTREN 197
           FYTCT C  Q +E+
Sbjct: 112 FYTCTNCKFQEKED 125

[Close]
BLAST of Lag0004485 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-08
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 123 GKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTT 182
           GK +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT 
Sbjct: 52  GKVVKTSVVFHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTV 111

Query: 183 FYTCTKCHHQTREN 197
           FYTCT C  Q +E+
Sbjct: 112 FYTCTNCKFQEKED 125

[Close]
BLAST of Lag0004485 vs. ExPASy Swiss-Prot
Match: Q791N7 (DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus OX=10090 GN=Polr1h PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 123 GKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTT 182
           GK +  +V   ++   + +S+ +  ++Q     RRC +CG++   + +RQMRSADEGQT 
Sbjct: 49  GKVVKTSVVFNKLGATIPLSVDEGPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTV 108

Query: 183 FYTCTKCHHQTREN 197
           FYTC  C  Q +E+
Sbjct: 109 FYTCINCKFQEKED 122

[Close]
BLAST of Lag0004485 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.6e-34
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           ++IG+EISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EIIGREISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.1e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 121 VIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQ 180
           +IG+EISYTVTAEEIRKQLGISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQ
Sbjct: 41  IIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQ 100

Query: 181 TTFYTCTKCHHQTREN 197
           TTFYTCTKCHHQTREN
Sbjct: 101 TTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           +++G+EISYTVTAEEIRKQLGISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EIVGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 71/77 (92.21%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           +++G+EISYTVTAEEIRKQLGISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

[Close]
BLAST of Lag0004485 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.5e-32
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 120 KVIGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEG 179
           ++ G+EISYTVTAEEIRKQLGISLI EEK+QL+KERRRCEKCGNDEAWFESRQMRSADEG
Sbjct: 40  EINGREISYTVTAEEIRKQLGISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEG 99

Query: 180 QTTFYTCTKCHHQTREN 197
           QTTFYTCTKCHHQTREN
Sbjct: 100 QTTFYTCTKCHHQTREN 116

The following BLAST results are available for this feature:
BLAST of Lag0004485 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144336.17.5e-3496.10DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
XP_022997634.11.7e-3396.05DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_02299763... [more]
XP_038886279.11.7e-3394.81DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] ... [more]
XP_022962626.12.2e-3393.51DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962... [more]
KAG6598510.12.2e-3393.51DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub... [more]
BLAST of Lag0004485 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1RMP05.6e-0839.19DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2... [more]
Q9P1U09.6e-0839.19DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE... [more]
Q5TM509.6e-0839.19DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H ... [more]
Q1XHV89.6e-0839.19DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H... [more]
Q791N73.6e-0737.84DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus OX=10090 GN=Polr1h P... [more]
BLAST of Lag0004485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CTE63.6e-3496.10DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140... [more]
A0A6J1KC198.1e-3496.05DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ... [more]
A0A6J1HDS41.1e-3393.51DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302... [more]
A0A0A0LKC42.3e-3392.21DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
A0A1S3BBZ47.5e-3290.91DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 156..195
e-value: 3.7E-12
score: 56.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 157..192
e-value: 2.2E-15
score: 56.2
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 154..194
score: 12.826397
NoneNo IPR availableGENE3D2.20.25.10coord: 142..195
e-value: 5.6E-16
score: 59.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..97
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 103..196
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 135..196
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 103..196
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 156..196
e-value: 1.77043E-21
score: 81.0952

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004485.1Lag0004485.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006363 termination of RNA polymerase I transcription
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding