Lag0004391 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004391
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	myrosinase-binding protein 2-like
Location	chr6: 3451596 .. 3452468 (+)
RNA-Seq Expression	Lag0004391
Synteny	Lag0004391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCTCGAGCTTACGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCCGCCCTCGTCCTTCTCTCCGAGAATTCGAAATCACCACCCGTCTTGTTAGAATCTCCAGGTAAACAAACACCCGTTTAATAACATTCTCATTTCTAGTTTCGTGTTCTTTTTTTTCCTCTTTTTTTCGAATTGGATGGATATCAAACTTTCAACCTAAAAGAAGATTGTATGTGTCTTATCCATTAAACTATTCTTTATTCATTGTTTCGAAAGAATAGCAAAATTATATTTGAGAATTGTTTCTTTGTTACATTCTTTGTCATCGGAGAAAAATAACCATATGTTCAATCTTAGTTTCTTTCTTTTCACTATAATTTTGGATTTGATAAAATAATCAAAATTATTGTGTTATGTTTATGTTTTCAATTTTTTTTTTTAATTAAAAAGCTATAAGGTAATGATTTCTTGATAAAAATTAAAACTTGGATAAGAAACAAGAAACCAGAGTGTTGTTTTTTTAAAAAAAAATTGTAAATAATTTTGAGAACGTTATGCTTATAACAATGAGAAATAGAAAGTAAAATTTGTCTAATTTTTCTGCTTATTTTCTGTTTGGCAGATGGGAAAGTTGGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACGAGAAAATATCAGATGTTGAAAGTTTTGGCCGAAGAACAGACCGCGCCGGCGGCAATTCCGACACCAATTACAGCACCGGCGCCGTCGCCGTCGCCGGCTCCGGCTCCGGCTCCGGGCGCCGCCGTGCCGTTACGGAGGTTCATGGCTGGTGCTGGAAAAGCTATATTGACAACGTTGAAGGGCTTGAAAGAAGCACATTAA

mRNA sequence

ATGACCCCTCGAGCTTACGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCCGCCCTCGTCCTTCTCTCCGAGAATTCGAAATCACCACCCGTCTTGTTAGAATCTCCAGATGGGAAAGTTGGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACGAGAAAATATCAGATGTTGAAAGTTTTGGCCGAAGAACAGACCGCGCCGGCGGCAATTCCGACACCAATTACAGCACCGGCGCCGTCGCCGTCGCCGGCTCCGGCTCCGGCTCCGGGCGCCGCCGTGCCGTTACGGAGGTTCATGGCTGGTGCTGGAAAAGCTATATTGACAACGTTGAAGGGCTTGAAAGAAGCACATTAA

Coding sequence (CDS)

ATGACCCCTCGAGCTTACGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCCGCCCTCGTCCTTCTCTCCGAGAATTCGAAATCACCACCCGTCTTGTTAGAATCTCCAGATGGGAAAGTTGGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACGAGAAAATATCAGATGTTGAAAGTTTTGGCCGAAGAACAGACCGCGCCGGCGGCAATTCCGACACCAATTACAGCACCGGCGCCGTCGCCGTCGCCGGCTCCGGCTCCGGCTCCGGGCGCCGCCGTGCCGTTACGGAGGTTCATGGCTGGTGCTGGAAAAGCTATATTGACAACGTTGAAGGGCTTGAAAGAAGCACATTAA

Protein sequence

MTPRAYVLIFFFWSLLTILTPALVLLSENSKSPPVLLESPDGKVGGIQMSRKVVGLTRKYQMLKVLAEEQTAPAAIPTPITAPAPSPSPAPAPAPGAAVPLRRFMAGAGKAILTTLKGLKEAH

Homology

[Close]

BLAST of Lag0004391 vs. NCBI nr
Match: XP_022144206.1 (uncharacterized protein LOC111013954 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-41
Identity = 100/122 (81.97%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVLLSENSKSPPVLLESPDGKVGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALVLLSENSKSPP   +SPDGK GGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQTAPAAIPTPITAPAPSPSPAPAPAPGAAVPLRRFMAGAGKAILTTLKGLK 120
           +MLKVLAEEQ AP AIP P+T P PSPS  PAPAP A  P+RRFMAGAGK ILTTLK LK
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPS--PAPAPDADFPVRRFMAGAGKVILTTLKVLK 120

Query: 121 EA 123
           EA
Sbjct: 121 EA 120

[Close]

BLAST of Lag0004391 vs. NCBI nr
Match: XP_023002554.1 (uncharacterized protein LOC111496365 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 97/119 (81.51%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVLLSENSKSPPVLLESPDGKVGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALV LSENSK+  +  +SPDGK+GGIQMSRK+VGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  QMLKVLAEEQTAPAAIPTPITAPAPSPSPAPAPAPGAAVPLRRFMAGAGKAILTTLKGL 120
           +MLKVL EEQT+PAAIPTPITAPAP+PS   A  PG AVPLRRFMAGAGK I+TTLKGL
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPS--TALPPGTAVPLRRFMAGAGKVIVTTLKGL 117

[Close]

BLAST of Lag0004391 vs. NCBI nr
Match: XP_038885597.1 (uncharacterized protein LOC120075920 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 99/123 (80.49%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVLLSENSKSPPVLLESPDGKVGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALV LS+NSK   +  +S DGK GGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSDNSKPSSLSFKSTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQTAPAAIPTPITAPAPSPSPAPAPAPGAAVPLRRFMAGAGKAILTTLKGLK 120
           QMLKVLAEEQTAPAAIPTPITAPA S    PAPA GAAV +R+FMA  GK ILTTLKGLK
Sbjct: 61  QMLKVLAEEQTAPAAIPTPITAPALS----PAPALGAAVSVRKFMADTGKVILTTLKGLK 119

Query: 121 EAH 124
           EAH
Sbjct: 121 EAH 119

[Close]

BLAST of Lag0004391 vs. NCBI nr
Match: XP_008444727.1 (PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 uncharacterized protein E6C27_scaffold82G005650 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-39
Identity = 99/123 (80.49%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVLLSENSKSPPVLLESPDGKVGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALV LSENSK   V  ES DG+ GGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQTAPAAIPTPITAPAPSPSPAPAPAPGAAVPLRRFMAGAGKAILTTLKGLK 120
           QMLK+LAEEQ AP  IPTPITAPA  PSPAPA APG AVP+ RFMA A K IL+TLKGLK
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPA--PSPAPASAPGNAVPVGRFMANARKLILSTLKGLK 120

Query: 121 EAH 124
           EAH
Sbjct: 121 EAH 121

[Close]

BLAST of Lag0004391 vs. NCBI nr
Match: XP_022951682.1 (uncharacterized protein LOC111454425 [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-39
Identity = 94/121 (77.69%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVLLSENSKSPPVLLESPDGKVGGIQMSRKVVGLTRKY 60
           MTPR YVLIFFFWSLLT+LTPALV LSE+SK+     +SPDGK+ GIQMSRK+VGLTRKY
Sbjct: 1   MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSPDGKIVGIQMSRKIVGLTRKY 60

Query: 61  QMLKVLAEEQTAPAAIPTPITAPAPSPSPAPAPA--PGAAVPLRRFMAGAGKAILTTLKG 120
           +MLKVLAEEQT+PAAIPTPITAPAP+PSP+P+ A  PG AVPLRRFMAGAGK + TTL+G
Sbjct: 61  EMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTAVPLRRFMAGAGKVVETTLEG 120

The following BLAST results are available for this feature:

BLAST of Lag0004391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144206.1	2.3e-41	81.97	uncharacterized protein LOC111013954 [Momordica charantia]	[more]
XP_023002554.1	1.5e-40	81.51	uncharacterized protein LOC111496365 [Cucurbita maxima]	[more]
XP_038885597.1	2.2e-39	80.49	uncharacterized protein LOC120075920 [Benincasa hispida]	[more]
XP_008444727.1	2.8e-39	80.49	PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 unc...	[more]
XP_022951682.1	2.8e-39	77.69	uncharacterized protein LOC111454425 [Cucurbita moschata]	[more]

BLAST of Lag0004391 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..96
None	No IPR available	PANTHER	PTHR38396	TRANSMEMBRANE PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004391.1	Lag0004391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane