Lag0004374 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004374
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger and BTB domain-containing protein 47
Locationchr6: 3292210 .. 3292575 (-)
RNA-Seq ExpressionLag0004374
SyntenyLag0004374
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGACGGCCAATCCGTACGGCCCAGGAAGAGAGGCCGACCTCGTAAGATCCTCGATGAACCACAGAACGAACAGGATAGCCAGAAACTGCCTTCGCCGCCGCCGGAAGTTGCAGATAAACCACCGGAGAAGAAGGCGAAAACCACCGGCGATGAGCCGCCGCCGCCGGCGGCTTCCATGGAAGGAGGTTCGACGCGAGAACAAGAACAGGAAGAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

mRNA sequence

ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGACGGCCAATCCGTACGGCCCAGGAAGAGAGGCCGACCTCGTAAGATCCTCGATGAACCACAGAACGAACAGGATAGCCAGAAACTGCCTTCGCCGCCGCCGGAAGTTGCAGATAAACCACCGGAGAAGAAGGCGAAAACCACCGGCGATGAGCCGCCGCCGCCGGCGGCTTCCATGGAAGGAGGTTCGACGCGAGAACAAGAACAGGAAGAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

Coding sequence (CDS)

ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGACGGCCAATCCGTACGGCCCAGGAAGAGAGGCCGACCTCGTAAGATCCTCGATGAACCACAGAACGAACAGGATAGCCAGAAACTGCCTTCGCCGCCGCCGGAAGTTGCAGATAAACCACCGGAGAAGAAGGCGAAAACCACCGGCGATGAGCCGCCGCCGCCGGCGGCTTCCATGGAAGGAGGTTCGACGCGAGAACAAGAACAGGAAGAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPSPPPEVADKPPEKKAKTTGDEPPPPAASMEGGSTREQEQEERKSGDGLRSRGRRKNKPRKSS
Homology
BLAST of Lag0004374 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 4.8e-31
Identity = 92/124 (74.19%), Postives = 101/124 (81.45%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAETSTSKLPDDG   G GQSV+PRKRGRPRK+LDEP    D +K
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEP---PDDKK 60

Query: 61  LPSPPPEVADKPPEKKAKTTGDEPPPPAASMEGGSTREQEQEERKSGDGLRSRGRRKNKP 120
           LP PP +VADKP +KK K+TGDEPP    SMEG S ++ E EE KSGDG RSRGRRKNKP
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPPD---SMEGAS-KQHESEEPKSGDGSRSRGRRKNKP 117

Query: 121 RKSS 122
           RKSS
Sbjct: 121 RKSS 117

BLAST of Lag0004374 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 91/124 (73.39%), Postives = 100/124 (80.65%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAETSTSKLPDDG   G GQS +PRKRGRPRK+LDEP +  D + 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPD--DKKL 92

Query: 61  LPSPPPEVADKPPEKKAKTTGDEPPPPAASMEGGSTREQEQEERKSGDGLRSRGRRKNKP 120
           LP P  +VADKP +KK KTTGDEPP    SMEG S ++QE EE KSGDG RSRGRRKNKP
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDEPP---ISMEGAS-KQQESEEPKSGDGSRSRGRRKNKP 150

Query: 121 RKSS 122
           RKSS
Sbjct: 153 RKSS 150

BLAST of Lag0004374 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-30
Identity = 90/124 (72.58%), Postives = 100/124 (80.65%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAE STSKLPDDG   G GQSV+PRKRGRPRK+LDEP +  D + 
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPD--DKKL 60

Query: 61  LPSPPPEVADKPPEKKAKTTGDEPPPPAASMEGGSTREQEQEERKSGDGLRSRGRRKNKP 120
           LP PP +VADKP +KK K+TGDEPP    SMEG S ++ E EE KSGDG RSRGRRKNKP
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPP---ISMEGAS-KQHESEEPKSGDGSRSRGRRKNKP 118

Query: 121 RKSS 122
           RKSS
Sbjct: 121 RKSS 118

BLAST of Lag0004374 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 89/125 (71.20%), Postives = 100/125 (80.00%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPS 60
           MGKKKTQKTK+IAVAIAETSTSKL DD G GQS++PRKRGRPRK+LDE QNEQ+++KLP 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADD-GIGQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60

Query: 61  PP---PEVADKPPEKKAKTTGDEPPPPAASMEGGSTRE-QEQEERKSGDGLRSRGRRKNK 120
           PP   PEV + PPEKK K T DEPPP       GS +E  +QEE K+GDG RSRGRRKNK
Sbjct: 61  PPPLLPEVEENPPEKKIKATVDEPPP-------GSVKEGSKQEEPKTGDGSRSRGRRKNK 117

Query: 121 PRKSS 122
           PRKSS
Sbjct: 121 PRKSS 117

BLAST of Lag0004374 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPS 60
           MGKKK QKTK+IAVAIAETS SKL DD G GQS++PRKRGRPRK+LDEPQN+Q+++KL  
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADD-GIGQSIQPRKRGRPRKVLDEPQNKQENKKLLP 60

Query: 61  PPPEVADKPPEKKAKTTGDEPPPPAASMEGGSTREQEQEERKSGDGLRSRGRRKNKPRKS 120
           P PEVA+ PPEKKAKTT D+PPP   SME GS    +Q E K+GDG RSRGRRKNKPRKS
Sbjct: 61  PLPEVAENPPEKKAKTTVDQPPP--GSMEEGS----KQGEPKTGDGSRSRGRRKNKPRKS 114

Query: 121 S 122
           S
Sbjct: 121 S 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7020516.14.8e-3174.19hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023002541.15.3e-3073.39uncharacterized protein LOC111496353 [Cucurbita maxima][more]
XP_023537340.16.9e-3072.58uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo][more]
KAA0065239.12.6e-2971.20zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa][more]
XP_038884964.12.6e-2972.73uncharacterized protein LOC120075548 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..121
NoneNo IPR availablePANTHERPTHR37615NUCLEOPORIN NUP159-LIKEcoord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004374.1Lag0004374.1mRNA