Lag0004368 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004368
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF1195)
Location	chr6: 3255687 .. 3256599 (+)
RNA-Seq Expression	Lag0004368
Synteny	Lag0004368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCGAGCTTTCACCGACAATGGCGGCTCTGAAGAAGGAGACCCCATCAGAAACTGGGCTCTCCTTTTTCCTCTCTAGAAAGGCTCGCTATAAGTTCTGGGCCTTAGGCGCCATTCTCCTCCTCGCCTTCTGGTCCATGTTCACCGGCTCCGTCTCCCTCAAATGGTCCGCCGGAACCTTCGCCAGATTCTACGACGGCCCCAGCAAGCCGATCTTCGACGATCTTGACATTCTGGTGATCTCTTTAGCCATTTCCATGGTGGGTTTTTGTTTTGATTGCTGTTCTTGGTGTTTTAGGGTTCTCTTTTGCTGAAATCAGGAAGTTGAAGAGCGGGAGAGAGCTGTCCGCCACATGTGGAATCTGTACACCCACGGCGGCGGCGGCCGGTTGCCGAGATTCTGGTCGGAAGCTTTTGAAGCGGCGTACGAGGACTTGATCGGCGATGTTCCCGCCGTTCGTGATGCTGCCCTTTTGGAGATCGCTAGAATGTCTCTGCAATCTGCTCACGTTGATTCAATTCCGATCAAATCCGAGGTAAGCCGACGTTTCATCTTATAATCTCTGAGTTTAAAAGTGTTCTTAGACGCTGTTTTGTGAGACTGTTTCTGAAACTGATAATGTTGCAGTAGTCTTATTTCTCTCTGATTGCGAACCAAACGTTCTTGCTTTTTATCAAATGTTTAAGAACTGAGCTTTGGATATAGAGATTTACCGCAAGATCTACTCGTTTTCTACCAAACTTTTTGCCTTTTTAATCGAAAATTTACACAACTTTCTACACTTTGTGGAGTTTATCAAACTTAAACTCCAATGTAAATGGTTAAAAGTCAGAAATTGAATGATGGGTTGTGGTGTACAGAGTGAGAGCAGATTGAAGAGCTCGAAACAAACTCAATTGGCTGAGTAG

mRNA sequence

ATGAAATCCGAGCTTTCACCGACAATGGCGGCTCTGAAGAAGGAGACCCCATCAGAAACTGGGCTCTCCTTTTTCCTCTCTAGAAAGGCTCGCTATAAGTTCTGGGCCTTAGGCGCCATTCTCCTCCTCGCCTTCTGGTCCATGTTCACCGGCTCCGTCTCCCTCAAATGGTCCGCCGGAACCTTCGCCAGATTCTACGACGGCCCCAGCAAGCCGATCTTCGACGATCTTGACATTCTGGAAGTTGAAGAGCGGGAGAGAGCTGTCCGCCACATGTGGAATCTGTACACCCACGGCGGCGGCGGCCGGTTGCCGAGATTCTGGTCGGAAGCTTTTGAAGCGGCGTACGAGGACTTGATCGGCGATGTTCCCGCCGTTCGTGATGCTGCCCTTTTGGAGATCGCTAGAATGTCTCTGCAATCTGCTCACGTTGATTCAATTCCGATCAAATCCGAGAGTGAGAGCAGATTGAAGAGCTCGAAACAAACTCAATTGGCTGAGTAG

Coding sequence (CDS)

ATGAAATCCGAGCTTTCACCGACAATGGCGGCTCTGAAGAAGGAGACCCCATCAGAAACTGGGCTCTCCTTTTTCCTCTCTAGAAAGGCTCGCTATAAGTTCTGGGCCTTAGGCGCCATTCTCCTCCTCGCCTTCTGGTCCATGTTCACCGGCTCCGTCTCCCTCAAATGGTCCGCCGGAACCTTCGCCAGATTCTACGACGGCCCCAGCAAGCCGATCTTCGACGATCTTGACATTCTGGAAGTTGAAGAGCGGGAGAGAGCTGTCCGCCACATGTGGAATCTGTACACCCACGGCGGCGGCGGCCGGTTGCCGAGATTCTGGTCGGAAGCTTTTGAAGCGGCGTACGAGGACTTGATCGGCGATGTTCCCGCCGTTCGTGATGCTGCCCTTTTGGAGATCGCTAGAATGTCTCTGCAATCTGCTCACGTTGATTCAATTCCGATCAAATCCGAGAGTGAGAGCAGATTGAAGAGCTCGAAACAAACTCAATTGGCTGAGTAG

Protein sequence

MKSELSPTMAALKKETPSETGLSFFLSRKARYKFWALGAILLLAFWSMFTGSVSLKWSAGTFARFYDGPSKPIFDDLDILEVEERERAVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLIGDVPAVRDAALLEIARMSLQSAHVDSIPIKSESESRLKSSKQTQLAE

Homology

[Close]

BLAST of Lag0004368 vs. NCBI nr
Match: XP_038885558.1 (uncharacterized protein LOC120075891 [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 153/169 (90.53%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKSELSPTMAALKKETPSETGLSFFLSRKARYKFWALGAILLLAFWSMFTGSVSLKWSAG 60
           MKSELSPTMAALKK+TPSETGLSFFLSRKARYKFWAL AILLLAFWSMFTGSVSLKWSA 
Sbjct: 1   MKSELSPTMAALKKDTPSETGLSFFLSRKARYKFWALAAILLLAFWSMFTGSVSLKWSAR 60

Query: 61  TFARFYDGPSKPIFDDLDILEVEERERAVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI 120
           TFARFYDGP K IFDDLDILEVEERER VRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI
Sbjct: 61  TFARFYDGPLKSIFDDLDILEVEERERDVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI 120

Query: 121 GDVPAVRDAALLEIARMSLQSAH--VDSIPIKSESESRLKSSKQTQLAE 168
           GDVPAVRDAALLEIARMSLQS H  VD IPIKS+ ES+LK+SKQ Q+AE
Sbjct: 121 GDVPAVRDAALLEIARMSLQSVHVDVDPIPIKSKRESKLKNSKQKQMAE 169

[Close]

BLAST of Lag0004368 vs. NCBI nr
Match: XP_022962157.1 (uncharacterized protein LOC111462692 isoform X4 [Cucurbita moschata])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MKSELSPTMAALKKETPSETGLSFFLSRKARYKFWALGAILLLAFWSMFTGSVSLKWSAG 60
           MK +LSPTMAALKK+TPSETG+SFFLSRKARYKFW L AILLLAFWSMFTGSVSLKWSA 
Sbjct: 1   MKPDLSPTMAALKKDTPSETGVSFFLSRKARYKFWVLAAILLLAFWSMFTGSVSLKWSAR 60

Query: 61  TFARFYDGPSKPIFDDLDILEVEERERAVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI 120
           TFARFYDGP KPIFDDLDILEVEERER VRHMWNLY+HGGGGRLPRFW EAFEAAYEDLI
Sbjct: 61  TFARFYDGPRKPIFDDLDILEVEERERDVRHMWNLYSHGGGGRLPRFWLEAFEAAYEDLI 120

Query: 121 GDVPAVRDAALLEIARMSLQSAHVDSIPIKSE 153
           GDVPAVRDAALLEIARMSLQS HVD IPIKS+
Sbjct: 121 GDVPAVRDAALLEIARMSLQSVHVDPIPIKSK 152

[Close]

BLAST of Lag0004368 vs. NCBI nr
Match: XP_023546989.1 (uncharacterized protein LOC111805922 isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MKSELSPTMAALKKETPSETGLSFFLSRKARYKFWALGAILLLAFWSMFTGSVSLKWSAG 60
           MK +LSPTMA LKK++PSETG+SFFLSRKARYKFW L AILLLAFWSMFTGSVSLKWSAG
Sbjct: 1   MKPDLSPTMATLKKDSPSETGVSFFLSRKARYKFWVLAAILLLAFWSMFTGSVSLKWSAG 60

Query: 61  TFARFYDGPSKPIFDDLDILEVEERERAVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI 120
           TFARFYDGP KPIFDDLDILEVEERER VRHMWNLY+HGGGGRLPRFW EAFEAAYEDLI
Sbjct: 61  TFARFYDGPRKPIFDDLDILEVEERERDVRHMWNLYSHGGGGRLPRFWLEAFEAAYEDLI 120

Query: 121 GDVPAVRDAALLEIARMSLQSAHVDSIPIKSE 153
           GDVPAVRDAALLEIARMSLQS HVD IPIKS+
Sbjct: 121 GDVPAVRDAALLEIARMSLQSVHVDPIPIKSK 152

[Close]

BLAST of Lag0004368 vs. NCBI nr
Match: XP_011649616.1 (uncharacterized protein LOC101218892 [Cucumis sativus] >KGN62590.1 hypothetical protein Csa_021795 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 143/168 (85.12%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 1   MKSELSPTMAALKKETPSETGLSFFLSRKARYKFWALGAILLLAFWSMFTGSVSLKWSAG 60
           MKSELSPTMAALKK+T S++  SFFLS+KARYKFWAL  ILLLAFWSMFTGSVSLKWSAG
Sbjct: 1   MKSELSPTMAALKKDTSSDSAFSFFLSKKARYKFWALAVILLLAFWSMFTGSVSLKWSAG 60

Query: 61  TFARFYDGPSKPIFDDLDILEVEERERAVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI 120
           TFARFYDGP KPIFDDLDILEVEERER VRHMWNLYTHGGGGRLPRFWS+AFEAAYEDLI
Sbjct: 61  TFARFYDGPLKPIFDDLDILEVEERERDVRHMWNLYTHGGGGRLPRFWSDAFEAAYEDLI 120

Query: 121 GDVPAVRDAALLEIARMSLQSAHV--DSIPIKSESESRLK-SSKQTQL 166
           GDVP  RDAALLEIARMSLQS HV  D IP+KS+ ES+LK SSKQ Q+
Sbjct: 121 GDVPGARDAALLEIARMSLQSVHVDFDPIPMKSKGESKLKSSSKQKQM 168

[Close]

BLAST of Lag0004368 vs. NCBI nr
Match: XP_023546987.1 (uncharacterized protein LOC111805922 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 138/156 (88.46%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 1   MKSELSPTMAALKKETPSETGLSFFLSRKARYKFWALGAILLLAFWSMFTGSVSLKWSAG 60
           MK +LSPTMA LKK++PSETG+SFFLSRKARYKFW L AILLLAFWSMFTGSVSLKWSAG
Sbjct: 1   MKPDLSPTMATLKKDSPSETGVSFFLSRKARYKFWVLAAILLLAFWSMFTGSVSLKWSAG 60

Query: 61  TFARFYDGPSKPIFDDLDILEVEERERAVRHMWNLYTHGGGGRLPRFWSEAFEAAYEDLI 120
           TFARFYDGP KPIFDDLDILEVEERER VRHMWNLY+HGGGGRLPRFW EAFEAAYEDLI
Sbjct: 61  TFARFYDGPRKPIFDDLDILEVEERERDVRHMWNLYSHGGGGRLPRFWLEAFEAAYEDLI 120

Query: 121 GDVPAVRDAALLEIARMSLQSAHVDSIPIKSESESR 157
           GDVPAVRDAALLEIARMSLQS HVD IPIKS+   R
Sbjct: 121 GDVPAVRDAALLEIARMSLQSVHVDPIPIKSKVSRR 156

The following BLAST results are available for this feature:

BLAST of Lag0004368 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885558.1	6.1e-77	90.53	uncharacterized protein LOC120075891 [Benincasa hispida]	[more]
XP_022962157.1	1.0e-71	90.79	uncharacterized protein LOC111462692 isoform X4 [Cucurbita moschata]	[more]
XP_023546989.1	1.0e-71	90.13	uncharacterized protein LOC111805922 isoform X5 [Cucurbita pepo subsp. pepo]	[more]
XP_011649616.1	1.3e-71	85.12	uncharacterized protein LOC101218892 [Cucumis sativus] >KGN62590.1 hypothetical ...	[more]
XP_023546987.1	1.3e-71	88.46	uncharacterized protein LOC111805922 isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0004368 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010608	Protein of unknown function DUF1195	PFAM	PF06708	DUF1195	coord: 7..146 e-value: 7.5E-56 score: 188.0
IPR010608	Protein of unknown function DUF1195	PANTHER	PTHR34358	OS03G0411600 PROTEIN	coord: 1..162
None	No IPR available	PANTHER	PTHR34358:SF7	PROTEIN, PUTATIVE-RELATED	coord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004368.1	Lag0004368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane