Lag0004214 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004214
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Small VCP/p97-interacting protein
Location	chr6: 1981507 .. 1983976 (+)
RNA-Seq Expression	Lag0004214
Synteny	Lag0004214

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATGGCGCCATCAGATAACGGTAGTTGTTGTAAAGTCAATCCTAGCCGTCCGATATAATACGAATTCCAAGAAAGTCAAAATTGATGGTGAAAATACCAATTCGAGAATTTGGGAAAAGCCTGCAACTGCAAGCAAAGCGATGGGGCAGTGCGTAAGTTGCCTAGACGAAGGCCAAAAGCAAGAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTCGAAGCTCGCACCAAAGCTGCTGAAGCCGCTCAGAGAAGGTAATTTTCTTTCCTCTCACCCTTGACTTCCATTCAAATTTCTGTGCGTCTTGATCCTTCTTTTTCAATTAGAACAGCTTATCATTTTGACTAGGGCTTTTGTTGATCGTTCTGTTTTTCAGTCAGTGCCCTCGATTTTTTTTATCAATGTTAATTGTTCACGTTTGGGATGTAACAGTTCCGCAGGGGAATGCTTTTTGGGTCTTCTGTCCCAAAGAATGGAACTGTATATGAAAAATAATCGTATACGAGCTTTTTTTTATTAGGGTTATGTTTTAGTTTTCCGTTGGTAAAGACTAGTTGTTTGAAACCATTTATATAATCTGGGTAAAATTTCAGTAACTATATAGGGTAGATTTCAAAAACTTATTTTTTATTTTTAAATTTTGGCAAAGATTTTGAGAATCTTTTTAATATATATAATAGAACTTAGATACTGTTAGGAAACAAGCTTACTTTTTTTTAGAAAAGAAGGCAAAACAAATGTGATAATAATGAACCTTAGTCTAAGTATTGTTTCACGTTTATAGAGCTATCGAAATTCTAAGTGCCCTAAAGGAAAGAGAGAAAATAGCAAGAAAAAGAAGCCATGAGTGTTCTAATTTGAGATGACTGGATTGCTCCCACCAATATTTTACTGACACATTCACTTTGGCATACATTAATTGCTTATTCATACCAAGGATGTAACTGCTATAGTTAACACTGAAGTACTTCCAGTGGCTGCTCTTGATAATGTGCTGAGTAGTCTGTCTTAAATTGAAATGAGAATTTCAAAGTTCAAATTAGAACTATGATGGGGATCATCTATGTTTTTGATACTGAAAATGATATAAATTTTTGCAGGCAAGAAGAATTCGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTTAAGGTCATTCAAATACCAGTTGCTTTTGTTGATTGTTAATTCTTAATTAATATTATATGGTCGATTATATTTCTTTTCTTTATTGTGGTTGGTAATATAGCTTAACCAATCCCATTATACTTCCGCTCGTAGAACTTGTTTCACTTCAGGCGCAATTTATCAGAGCACGTGGATGGAAGGCCTCTTAACATTTTCTTCTTGTTTTTGTTGATGCAGTGGAGTATGGGCTGAGGTAGTGAATCTATGGTCATCTTCACTTCTCTTTTGCTGTAAGTGAAATTTCTAGCAGCTAAAGTTTAATCAGCTCTTCTGCACATTATGCTTATCACTGTCAGATTAGTGAAGTTTTGTAATACTAAGACCTATGCAAGTAGAATTGTACTTCTTCATGTAATGTGATCTCTATTTTCCCTTGCATTACGATGTTGATGAATCTCGTTTGATTCCCTACTAAGAAGAAAATTTCAATTGTGCAGTGTTAATAAAAGGAAAAGATTGTATATTTATCCGCATTCCTGGATTCTCTTGTGCCCCAAGCAACTTGTCTATACTCCCAAGTCTTCCAAGGCAGAAGTTATTGGAAGGAACTGTCTTGTATTTGTTATTCATGAATCAAGGAAAACAATAAGTGTGCAGACTTCTATTTTTTTGACACTTTTCTTTCATTTACTCGAACTTGTTATATTTCAATTTACATTTCATCCATATGCAATTACTGTACAGAAATGTTTCTTGCATCAACTCCATGTTTTGCTCTCTTGGCAAAAACTTGTTTTTGACGATATCATTAACTAAGTTTAGCATTGATATTTTTCCAAAATGAATCCTTATTCATACAGGCTTCTTCGATATGAAATGAGCCACTTTGAATGATTTCTTTGCTCTAACCTAGAATACAAGCAATCTGACATGGGAAAATTAACTTTCACATAAAATAAGAAGTATCAAAAAGAAAAATTGCAAAAAGAAGCAAGTATTGAACATGTTTCTGCAAGAATACTTTTGTATCGTGCAGAAATGCTTTCAGCATTGTTTAACTTTCAATAAGTTTGCTCGGGTTTCTCTGAATATTTACATTCTTTGGTAGATCCTACAGTTGATATTGTTGGATATTGACATTAACATGTTAATTGATGATAGTCCATTGGTTCAATATCCTGCAATCATCCCAAGTCCCAACCAAGGATTGCAGCCTGCTGAGCTCAGTCACAAGATCCAATTTTTAGATTGCGAGACAATTTTGGCAGTTTTCCAGTTTTCCTAG

mRNA sequence

ATGACATGGCGCCATCAGATAACGGTAGTTGTTGTAAAGTCAATCCTAGCCGTCCGATATAATACGAATTCCAAGAAAGTCAAAATTGATGGTGAAAATACCAATTCGAGAATTTGGGAAAAGCCTGCAACTGCAAGCAAAGCGATGGGGCAGTGCGTAAGTTGCCTAGACGAAGGCCAAAAGCAAGAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTCGAAGCTCGCACCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAATTCGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTTAAGATCCTACAGTTGATATTGTTGGATATTGACATTAACATGTTAATTGATGATAGTCCATTGGTTCAATATCCTGCAATCATCCCAAGTCCCAACCAAGGATTGCAGCCTGCTGAGCTCAGTCACAAGATCCAATTTTTAGATTGCGAGACAATTTTGGCAGTTTTCCAGTTTTCCTAG

Coding sequence (CDS)

ATGACATGGCGCCATCAGATAACGGTAGTTGTTGTAAAGTCAATCCTAGCCGTCCGATATAATACGAATTCCAAGAAAGTCAAAATTGATGGTGAAAATACCAATTCGAGAATTTGGGAAAAGCCTGCAACTGCAAGCAAAGCGATGGGGCAGTGCGTAAGTTGCCTAGACGAAGGCCAAAAGCAAGAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTCGAAGCTCGCACCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAATTCGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTTAAGATCCTACAGTTGATATTGTTGGATATTGACATTAACATGTTAATTGATGATAGTCCATTGGTTCAATATCCTGCAATCATCCCAAGTCCCAACCAAGGATTGCAGCCTGCTGAGCTCAGTCACAAGATCCAATTTTTAGATTGCGAGACAATTTTGGCAGTTTTCCAGTTTTCCTAG

Protein sequence

MTWRHQITVVVVKSILAVRYNTNSKKVKIDGENTNSRIWEKPATASKAMGQCVSCLDEGQKQERKEEERLASVEARTKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSANTNKGEPVLKILQLILLDIDINMLIDDSPLVQYPAIIPSPNQGLQPAELSHKIQFLDCETILAVFQFS

Homology

[Close]

BLAST of Lag0004214 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 41  KPATASKAMGQCVSCLDEGQKQERKEEERLASVEARTKAAEAAQRRQEEFEKSAAGRAAR 100
           KPATASKAMGQCVSCLDE QKQ+RKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAAR
Sbjct: 12  KPATASKAMGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAAR 71

Query: 101 AQLAANAKQSANTNKGEPVLK 122
           AQ+AANAKQSAN NKGEPVLK
Sbjct: 72  AQMAANAKQSANANKGEPVLK 92

[Close]

BLAST of Lag0004214 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 49  MGQCVSCLDEGQKQERKEEERLASVEARTKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 108
           MGQCVSCLDEGQKQ+RKEEERLASVEAR KAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 109 QSANTNKGEPVLK 122
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lag0004214 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-25
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 49  MGQCVSCLDEGQKQERKEEERLASVEARTKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 108
           MGQCVSCLDEG+KQ+RKEEERLASVEAR KAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 109 QSANTNKGEPVLK 122
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lag0004214 vs. NCBI nr
Match: KAG7029301.1 (hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-24
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 49  MGQCVSCLDEGQKQERKEEERLASVEARTKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 108
           MGQC SCLDEGQ+QERKEEERLASVEAR KAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 109 QSANTNKGEPVLK 122
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lag0004214 vs. NCBI nr
Match: XP_022962383.1 (uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 uncharacterized protein LOC111492013 [Cucurbita maxima] >XP_023547040.1 uncharacterized protein LOC111805961 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-24
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 49  MGQCVSCLDEGQKQERKEEERLASVEARTKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 108
           MGQC SCLDEGQ+QERKEEERLASVEAR KAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 109 QSANTNKGEPVLK 122
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

The following BLAST results are available for this feature:

BLAST of Lag0004214 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020610.1	2.5e-28	93.83	hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008444542.1	1.5e-25	97.26	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
XP_038886006.1	3.4e-25	95.89	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
KAG7029301.1	1.3e-24	94.52	hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022962383.1	1.3e-24	94.52	uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 unchar...	[more]

BLAST of Lag0004214 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 49..122
None	No IPR available	PANTHER	PTHR36813:SF1	TRANSMEMBRANE PROTEIN	coord: 49..122
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 49..121 e-value: 2.6E-11 score: 43.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004214.1	Lag0004214.1	mRNA