Lag0004212 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004212
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GATA type zinc finger transcription factor family protein
Location	chr6: 1974203 .. 1975150 (-)
RNA-Seq Expression	Lag0004212
Synteny	Lag0004212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAGACCGTCTATCTCGTCGACAAGTTGACCGCCGATAACCGCATTTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTCAAGGTAAAAGCATTTGTTTTTAACTCTTTTTTGCCTGTGGTTAATGAAAGAAATGGAACTTTGAAACTGAAGTTGTTGATCTGTTTTCAGCTCAGCAACTACAATTCCTTTGAGGGGGTACTTTACTGCAGGCCACATTTTGATCAGATCTTCAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGTACAAATTATAAATTGTTTGGATGGATCTGATTCTTCAGATTTTGATGTTAATTCTCTGTTTATAACCAAACCATTTTGGTTTATTTTTGTGTTTTTAGGGACACCCAAGATCGTAAAACCAGAGAAACCTATTGATAGCGAGGTAATTCCATTTTTGTTTGAGACTATTACATGAAGAATTTCTTCTGTTTCTCCCATTGATCTTGAAAATGCATCGACAGAAACCGACAGCAAACAAGGTTGCTAGCATGTTTGGCGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTCTATCCAACAGAGAAGGTAACAAGAATACACAAGTTTTTTTCTTCCCTTTTCATTTCATTAAGAACGAGCAAATCCAACCTCTGTAAATGGTTTCTGTTTCAAGGTTACTGTGAATGGAACTCCATACCATAAAAGTTGCTTCAAATGCTGCCATGGAGGATGCACGATCAGCCCTTCGAACTATATCGCTCATGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATACCAGCGAGGGAGAAAATCAATGGCGGAGAGGTGGCTTCTGAGGCTTGA

mRNA sequence

ATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAGACCGTCTATCTCGTCGACAAGTTGACCGCCGATAACCGCATTTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTCAAGCTCAGCAACTACAATTCCTTTGAGGGGGTACTTTACTGCAGGCCACATTTTGATCAGATCTTCAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGGACACCCAAGATCGTAAAACCAGAGAAACCTATTGATAGCGAGAAACCGACAGCAAACAAGGTTGCTAGCATGTTTGGCGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTCTATCCAACAGAGAAGGTTACTGTGAATGGAACTCCATACCATAAAAGTTGCTTCAAATGCTGCCATGGAGGATGCACGATCAGCCCTTCGAACTATATCGCTCATGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATACCAGCGAGGGAGAAAATCAATGGCGGAGAGGTGGCTTCTGAGGCTTGA

Coding sequence (CDS)

ATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAGACCGTCTATCTCGTCGACAAGTTGACCGCCGATAACCGCATTTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTCAAGCTCAGCAACTACAATTCCTTTGAGGGGGTACTTTACTGCAGGCCACATTTTGATCAGATCTTCAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGGACACCCAAGATCGTAAAACCAGAGAAACCTATTGATAGCGAGAAACCGACAGCAAACAAGGTTGCTAGCATGTTTGGCGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTCTATCCAACAGAGAAGGTTACTGTGAATGGAACTCCATACCATAAAAGTTGCTTCAAATGCTGCCATGGAGGATGCACGATCAGCCCTTCGAACTATATCGCTCATGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATACCAGCGAGGGAGAAAATCAATGGCGGAGAGGTGGCTTCTGAGGCTTGA

Protein sequence

MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHEKIPAREKINGGEVASEA

Homology

[Close]

BLAST of Lag0004212 vs. NCBI nr
Match: XP_022131363.1 (LIM domain-containing protein WLIM1-like [Momordica charantia])

HSP 1 Score: 420.2 bits (1079), Expect = 9.6e-114
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKPID EKPTANKVASMFGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPIDGEKPTANKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGEVASEA 198
           KI AREKINGGEVASEA
Sbjct: 181 KITAREKINGGEVASEA 197

[Close]

BLAST of Lag0004212 vs. NCBI nr
Match: XP_022962514.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_022997596.1 LIM domain-containing protein WLIM1-like [Cucurbita maxima] >XP_023545896.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.5 bits (1064), Expect = 5.3e-112
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKP+DSEKPTA KVASMFGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGEVASEA 198
           KIP++EKING  VASEA
Sbjct: 181 KIPSKEKINGEAVASEA 197

[Close]

BLAST of Lag0004212 vs. NCBI nr
Match: XP_008444540.1 (PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo])

HSP 1 Score: 412.5 bits (1059), Expect = 2.0e-111
Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGC+NTVYPT
Sbjct: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCDNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNG PYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGIPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGE-VASEA 198
           KI A+EKINGGE VASEA
Sbjct: 181 KITAKEKINGGEVVASEA 198

[Close]

BLAST of Lag0004212 vs. NCBI nr
Match: KAG6598329.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 412.1 bits (1058), Expect = 2.6e-111
Identity = 189/197 (95.94%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKP+DSEKPTA KVASMFGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGEVASEA 198
           KIP++E ING  VASEA
Sbjct: 181 KIPSKETINGEAVASEA 197

[Close]

BLAST of Lag0004212 vs. NCBI nr
Match: XP_038886389.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida])

HSP 1 Score: 412.1 bits (1058), Expect = 2.6e-111
Identity = 192/198 (96.97%), Postives = 194/198 (97.98%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKPID EKPTANKVAS FGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPIDGEKPTANKVASKFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGE-VASEA 198
           KI A+EKINGGE VASEA
Sbjct: 181 KITAKEKINGGEMVASEA 198

[Close]

BLAST of Lag0004212 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.9e-94
Identity = 155/188 (82.45%), Postives = 173/188 (92.02%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMAC+KTVYLVDKLTADNR+YHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKI KP++P++ E+P   KV++MFGGTR+KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKV+VNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHHIQLIKEKGNLSQLEG  E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 181 KIPAREKI 189
              A++K+
Sbjct: 181 N-AAKDKV 187

[Close]

BLAST of Lag0004212 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-78
Identity = 128/175 (73.14%), Postives = 147/175 (84.00%), Query Frame = 0


Query: 2   AFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  CEKTVYLVDKL A+ R+YHKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPTE 121
           FDQ+FKRTGSL+KSF+GTPK  KPE+    E  +AN+++S F GTRDKC  C   VYP E
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLE 177
           +V V+GT YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHHIQL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of Lag0004212 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-60
Identity = 106/175 (60.57%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HF+Q+FK +GS  K+F+   K +  +KP      T +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Lag0004212 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.8e-58
Identity = 104/179 (58.10%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKP----TANKVASMFGGTRDKCLGCNNT 120
           HF+Q+FK +GS +K+F+       P K  D   P    T ++VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           VYP EKVTV    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Lag0004212 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-53
Identity = 92/175 (52.57%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC AC+KTVY++D LT +   YHK+CFRC HCKGTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HF+Q+FK +G+  K+F+      K EKP D    T +K++S F GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGNYSKNFQAG----KTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPL 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVT+ G  YHK+CF+C H GC ++ S+Y +  G LYCK H  QL  EKG+ + +
Sbjct: 121 EKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]

BLAST of Lag0004212 vs. ExPASy TrEMBL
Match: A0A6J1BT53 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111004606 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 4.6e-114
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKPID EKPTANKVASMFGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPIDGEKPTANKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGEVASEA 198
           KI AREKINGGEVASEA
Sbjct: 181 KITAREKINGGEVASEA 197

[Close]

BLAST of Lag0004212 vs. ExPASy TrEMBL
Match: A0A6J1K7W9 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111492481 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 2.5e-112
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKP+DSEKPTA KVASMFGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGEVASEA 198
           KIP++EKING  VASEA
Sbjct: 181 KIPSKEKINGEAVASEA 197

[Close]

BLAST of Lag0004212 vs. ExPASy TrEMBL
Match: A0A6J1HHA7 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111462919 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 2.5e-112
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKP+DSEKPTA KVASMFGGTRDKCLGCNNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGEVASEA 198
           KIP++EKING  VASEA
Sbjct: 181 KIPSKEKINGEAVASEA 197

[Close]

BLAST of Lag0004212 vs. ExPASy TrEMBL
Match: A0A1S3BBD7 (LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103487830 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 9.7e-112
Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGC+NTVYPT
Sbjct: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCDNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNG PYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGIPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGE-VASEA 198
           KI A+EKINGGE VASEA
Sbjct: 181 KITAKEKINGGEVVASEA 198

[Close]

BLAST of Lag0004212 vs. ExPASy TrEMBL
Match: A0A0A0LNS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354680 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.2e-111
Identity = 192/198 (96.97%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPT 120
           HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSE+PTANKVAS FGGTRDKCLGC+NTVYPT
Sbjct: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSERPTANKVASKFGGTRDKCLGCDNTVYPT 120

Query: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIPAREKINGGE-VASEA 198
           KI A+EKINGGE VASEA
Sbjct: 181 KITAKEKINGGEVVASEA 198

The following BLAST results are available for this feature:

BLAST of Lag0004212 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131363.1	9.6e-114	98.48	LIM domain-containing protein WLIM1-like [Momordica charantia]	[more]
XP_022962514.1	5.3e-112	96.45	LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_022997596.1 LI...	[more]
XP_008444540.1	2.0e-111	97.47	PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo]	[more]
KAG6598329.1	2.6e-111	95.94	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_038886389.1	2.6e-111	96.97	LIM domain-containing protein WLIM1-like [Benincasa hispida]	[more]

BLAST of Lag0004212 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	3.9e-94	82.45	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	5.2e-78	73.14	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	4.9e-60	60.57	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	7.8e-58	58.10	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O80839	3.4e-53	52.57	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of Lag0004212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT53	4.6e-114	98.48	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1K7W9	2.5e-112	96.45	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1HHA7	2.5e-112	96.45	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BBD7	9.7e-112	97.47	LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103487830 PE=4...	[more]
A0A0A0LNS7	2.2e-111	96.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354680 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 5.2E-10 score: 49.3 coord: 109..161 e-value: 2.2E-12 score: 57.1
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 110..164 e-value: 5.6E-12 score: 45.7 coord: 10..63 e-value: 1.3E-9 score: 38.1
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.0285
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 12.3553
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 4.6E-19 score: 70.4 coord: 105..174 e-value: 4.3E-18 score: 67.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..197
None	No IPR available	PANTHER	PTHR24206:SF77	LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE	coord: 1..185
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..185
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.30552E-40 score: 129.892
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 5.04887E-38 score: 123.735
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004212.1	Lag0004212.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding