Lag0004196 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004196
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AP2-like ethylene-responsive transcription factor ANT
Location	chr6: 1807995 .. 1809192 (-)
RNA-Seq Expression	Lag0004196
Synteny	Lag0004196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCTCTCAAGGAACCAACGGTGTGGGATGTGACTGTGAGCATCCTACAGTCACAGGCAGGGCAGTAAGAAAAACGGGGCTAGCTAATTACCATTTTTGTTTAAAAGTGTGTCTGGCAACTGGCAAGTGAATTAAATTGAAAATTGGGCAAAAAAGCAAAAGCAAAAAACAAATGAGTTTTTAAATTAAGATCCTTTCTGTGTGAGCTGCACAGTGCCTGTACTGTACTGTGTGAAGAGACCCGATGGGGCTGAGTGTGAGCAGATATGTCCTGCCCTTCAAATCTATCCAAAATGTACTCTATCTTTGTGTCTTCTCTGCTCACCTCTCTCTTTTAACCTAATCAAATAAACTAAACTCCTCAATCTTTAAAAACTTATTCAACCAGACTATCACAATGTGAATGTCGATTATAATTGTGACAGTCTTTTCAAATAATTTATCCGTGGGTGTAAAACTATCGACCACATTGTAACGGGATGGGACTGAAAATGGGTGGTGGGGATTTAGGGAAAGTAAAAGACGTGGTCTTTCTCAAAATACACAGATCCCTATGGACTGCAGGGATGCTACCCAACATTGCTCATTTACCCTTGCTTCAAATTTCATTCTGTTTGTTTAGTTTAAAGAGACCAAGGCTTTGCCTCTTCTCCTCTATTGTTTAGAGAAGTGGGAGCGAGAGCTATTTTCCAAATTCCAAACGCCAAGGCCAAGGCCAAACTTATTTGGGGTTATTTCTTTTTGCACTGTAATTTCTTATTCTTTGAAAGAGGGAGGGAAGAAAAAAAAAAAAAAAAAAGAATTGAAATAGTTGTTGTTGTTGTTGTGTTTTGTTATTTAAAAATCCCCAATGATTGATTTCGGTTGTTGCAGTGCAGCTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATCATGAAGTCGATGAATGAAAATGAGAGTAACAATAATAATAATAATGGTTGGTTGGGATTCTCTCTTTCTCCTCAAATGAAAATGGAGGTTACTTCTTCTGATCCTCACCACCACCACCATGCTCATCCGTACAACAACCACCACCATTCTCACACTGCTTCCAATTCCTTCTACTTGTCTCCTCATTACAACAACAACAACAGCAACAGCTCTGAAATTTTCTATGGATTGCTGAAAGTGCCCCTCTCCATCACTCTGCTGCTGCTTCCCTCTCTGTAA

mRNA sequence

ATGGACACCTCTCAAGGAACCAACGGTGTGGGATGTGACTTGCCTGTACTGTACTGTGTGAAGAGACCCGATGGGGCTGAGTGTGAGCAGATATGTCCTGCCCTTCAAATCTATCCAAAATTGCAGCTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATCATGAAGTCGATGAATGAAAATGAGAGTAACAATAATAATAATAATGGTTGGTTGGGATTCTCTCTTTCTCCTCAAATGAAAATGGAGGTTACTTCTTCTGATCCTCACCACCACCACCATGCTCATCCGTACAACAACCACCACCATTCTCACACTGCTTCCAATTCCTTCTACTTGTCTCCTCATTACAACAACAACAACAGCAACAGCTCTGAAATTTTCTATGGATTGCTGAAAGTGCCCCTCTCCATCACTCTGCTGCTGCTTCCCTCTCTGTAA

Coding sequence (CDS)

ATGGACACCTCTCAAGGAACCAACGGTGTGGGATGTGACTTGCCTGTACTGTACTGTGTGAAGAGACCCGATGGGGCTGAGTGTGAGCAGATATGTCCTGCCCTTCAAATCTATCCAAAATTGCAGCTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATCATGAAGTCGATGAATGAAAATGAGAGTAACAATAATAATAATAATGGTTGGTTGGGATTCTCTCTTTCTCCTCAAATGAAAATGGAGGTTACTTCTTCTGATCCTCACCACCACCACCATGCTCATCCGTACAACAACCACCACCATTCTCACACTGCTTCCAATTCCTTCTACTTGTCTCCTCATTACAACAACAACAACAGCAACAGCTCTGAAATTTTCTATGGATTGCTGAAAGTGCCCCTCTCCATCACTCTGCTGCTGCTTCCCTCTCTGTAA

Protein sequence

MDTSQGTNGVGCDLPVLYCVKRPDGAECEQICPALQIYPKLQLEEEEEEEEEKIMKSMNENESNNNNNNGWLGFSLSPQMKMEVTSSDPHHHHHAHPYNNHHHSHTASNSFYLSPHYNNNNSNSSEIFYGLLKVPLSITLLLLPSL

Homology

[Close]

BLAST of Lag0004196 vs. NCBI nr
Match: XP_022997001.1 (AP2-like ethylene-responsive transcription factor ANT isoform X1 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 64/96 (66.67%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 43  LEEEEEEEEEKIMKSMNENESNNNNNN-------GWLGFSLSPQMKMEVTSSDPHHHHHA 102
           LE++E   EEK MKSMNENE+NNNNNN        WLGFSLSP MKMEVTSSD       
Sbjct: 46  LEKKERRAEEK-MKSMNENENNNNNNNNNNNNSSSWLGFSLSPHMKMEVTSSD------- 105

Query: 103 HPYNNHHHSHTASNSFYLSPHYNNNNSNSSEIFYGL 132
           HPY NHHHSH+ASN+FYLSPHYNNN    +EIFYG+
Sbjct: 106 HPY-NHHHSHSASNAFYLSPHYNNN----TEIFYGI 128

[Close]

BLAST of Lag0004196 vs. NCBI nr
Match: XP_022997002.1 (AP2-like ethylene-responsive transcription factor ANT isoform X2 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-16
Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 55  MKSMNENESNNNNNN-------GWLGFSLSPQMKMEVTSSDPHHHHHAHPYNNHHHSHTA 114
           MKSMNENE+NNNNNN        WLGFSLSP MKMEVTSSD       HPY NHHHSH+A
Sbjct: 1   MKSMNENENNNNNNNNNNNNSSSWLGFSLSPHMKMEVTSSD-------HPY-NHHHSHSA 60

Query: 115 SNSFYLSPHYNNNNSNSSEIFYGL 132
           SN+FYLSPHYNNN    +EIFYG+
Sbjct: 61  SNAFYLSPHYNNN----TEIFYGI 72

[Close]

BLAST of Lag0004196 vs. NCBI nr
Match: XP_023547288.1 (AP2-like ethylene-responsive transcription factor ANT [Cucurbita pepo subsp. pepo] >XP_023547289.1 AP2-like ethylene-responsive transcription factor ANT [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-16
Identity = 57/85 (67.06%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 55  MKSMNENESNNNNNN--------GWLGFSLSPQMKMEVTSSDPHHHHHAHPYNNHHHSHT 114
           MKSMNENE+NNNNNN         WLGFSLSP MKMEVT+SD       HPY NHHHSH+
Sbjct: 1   MKSMNENENNNNNNNNNNNNSSSSWLGFSLSPHMKMEVTASD-------HPY-NHHHSHS 60

Query: 115 ASNSFYLSPHYNNNNSNSSEIFYGL 132
           A+N+FYLSPHYNNN    SEIFYG+
Sbjct: 61  ATNAFYLSPHYNNN----SEIFYGI 73

[Close]

BLAST of Lag0004196 vs. NCBI nr
Match: XP_022962449.1 (AP2-like ethylene-responsive transcription factor ANT [Cucurbita moschata] >XP_022962450.1 AP2-like ethylene-responsive transcription factor ANT [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-16
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 55  MKSMNENESNNNNNN------GWLGFSLSPQMKMEVTSSDPHHHHHAHPYNNHHHSHTAS 114
           MKSMNENE+NNNNNN       WLGFSLSP MKMEVT+SD       HPY NHHHSH+A+
Sbjct: 1   MKSMNENENNNNNNNNNNNSSSWLGFSLSPHMKMEVTASD-------HPY-NHHHSHSAT 60

Query: 115 NSFYLSPHYNNNNSNSSEIFYGL 132
           N+FYLSPHYNNN    +EIFYG+
Sbjct: 61  NAFYLSPHYNNN----TEIFYGI 71

[Close]

BLAST of Lag0004196 vs. NCBI nr
Match: KAG7029288.1 (AP2-like ethylene-responsive transcription factor ANT, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-16
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 55  MKSMNENE-----SNNNNNNGWLGFSLSPQMKMEVTSSDPHHHHHAHPYNNHHHSHTASN 114
           MKSMNENE     SNNNNN+ WLGFSLSP MKMEVT+SD       HPY NHHHSH+A+N
Sbjct: 1   MKSMNENENNNNNSNNNNNSSWLGFSLSPHMKMEVTASD-------HPY-NHHHSHSATN 60

Query: 115 SFYLSPHYNNNNSNSSEIFYGL 132
           +FYLSPHYNNN    +EIFYG+
Sbjct: 61  AFYLSPHYNNN----TEIFYGI 70

The following BLAST results are available for this feature:

BLAST of Lag0004196 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997001.1	2.8e-17	66.67	AP2-like ethylene-responsive transcription factor ANT isoform X1 [Cucurbita maxi...	[more]
XP_022997002.1	1.1e-16	69.05	AP2-like ethylene-responsive transcription factor ANT isoform X2 [Cucurbita maxi...	[more]
XP_023547288.1	3.1e-16	67.06	AP2-like ethylene-responsive transcription factor ANT [Cucurbita pepo subsp. pep...	[more]
XP_022962449.1	4.0e-16	67.47	AP2-like ethylene-responsive transcription factor ANT [Cucurbita moschata] >XP_0...	[more]
KAG7029288.1	5.2e-16	68.29	AP2-like ethylene-responsive transcription factor ANT, partial [Cucurbita argyro...	[more]

BLAST of Lag0004196 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004196.1	Lag0004196.1	mRNA