Lag0004152 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004152
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGlutaredoxin
Locationchr6: 1448286 .. 1448681 (+)
RNA-Seq ExpressionLag0004152
SyntenyLag0004152
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCGCTGCACAAACGACGTCGTGTTCTCGGAATTCCCTCCCTCTCCGACCTCTTCTTCTTCGCTATCGATCGACGTGGATGAATCATCTGAAACTCGGATCCGGCGGCTGATTACAGAGCATCCGGTGATCATCTTCAGCCGGTCGTCCTGCAGCATGTGCCACGTCATGAAGACGCTCCTCGCCACCATCGGCGTCCACCCCACCGTCATCGAACTCGACGAGCACGACGAAATCGCCGCCGTTCCTTCTTCGTCATTTGTTCAGGACAGTTCGGCGCCGGCGGTTTTCATCGGCGGCGCTAGCTTCGGCGGCTTGGAGACTCTTGTTGCTCTCCATCTCAGCGGCCATCTCGTTCCTAAACTCATCGAAGTTGGCGCTCTCCCGGTATGA

mRNA sequence

ATGCACCGCTGCACAAACGACGTCGTGTTCTCGGAATTCCCTCCCTCTCCGACCTCTTCTTCTTCGCTATCGATCGACGTGGATGAATCATCTGAAACTCGGATCCGGCGGCTGATTACAGAGCATCCGGTGATCATCTTCAGCCGGTCGTCCTGCAGCATGTGCCACGTCATGAAGACGCTCCTCGCCACCATCGGCGTCCACCCCACCGTCATCGAACTCGACGAGCACGACGAAATCGCCGCCGTTCCTTCTTCGTCATTTGTTCAGGACAGTTCGGCGCCGGCGGTTTTCATCGGCGGCGCTAGCTTCGGCGGCTTGGAGACTCTTGTTGCTCTCCATCTCAGCGGCCATCTCGTTCCTAAACTCATCGAAGTTGGCGCTCTCCCGGTATGA

Coding sequence (CDS)

ATGCACCGCTGCACAAACGACGTCGTGTTCTCGGAATTCCCTCCCTCTCCGACCTCTTCTTCTTCGCTATCGATCGACGTGGATGAATCATCTGAAACTCGGATCCGGCGGCTGATTACAGAGCATCCGGTGATCATCTTCAGCCGGTCGTCCTGCAGCATGTGCCACGTCATGAAGACGCTCCTCGCCACCATCGGCGTCCACCCCACCGTCATCGAACTCGACGAGCACGACGAAATCGCCGCCGTTCCTTCTTCGTCATTTGTTCAGGACAGTTCGGCGCCGGCGGTTTTCATCGGCGGCGCTAGCTTCGGCGGCTTGGAGACTCTTGTTGCTCTCCATCTCAGCGGCCATCTCGTTCCTAAACTCATCGAAGTTGGCGCTCTCCCGGTATGA

Protein sequence

MHRCTNDVVFSEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKTLLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGALPV
Homology
BLAST of Lag0004152 vs. NCBI nr
Match: XP_038885533.1 (glutaredoxin-C6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59
Identity = 122/131 (93.13%), Postives = 127/131 (96.95%), Query Frame = 0

Query: 1   MHRCTNDVVFSEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MHRC NDVV SEFPPSPTSSSSLSIDVDESSETRIRRLI EHPVIIFSR+SCSMCHVMKT
Sbjct: 1   MHRCPNDVVSSEFPPSPTSSSSLSIDVDESSETRIRRLIAEHPVIIFSRTSCSMCHVMKT 60

Query: 61  LLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLA IGVHPTVIELD+HDEIAAVPSSSFV+DSSAPAVFIGGASFGGLE+LVALHLSGHL+
Sbjct: 61  LLAIIGVHPTVIELDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLI 120

Query: 121 PKLIEVGALPV 132
           PKLIEVGALPV
Sbjct: 121 PKLIEVGALPV 131

BLAST of Lag0004152 vs. NCBI nr
Match: XP_038885534.1 (glutaredoxin-C6-like isoform X2 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 4.5e-59
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 0

Query: 1   MHRCTNDVVFSEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MHRC NDVV SEFPPSPTSSSSLSIDVDESSETRIRRLI EHPVIIFSR+SCSMCHVMKT
Sbjct: 1   MHRCPNDVVSSEFPPSPTSSSSLSIDVDESSETRIRRLIAEHPVIIFSRTSCSMCHVMKT 60

Query: 61  LLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLA IGVHPTVIELD+HDEIAAVPSSSFV+DSSAPAVFIGGASFGGLE+LVALHLSGHL+
Sbjct: 61  LLAIIGVHPTVIELDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLI 120

Query: 121 PKLIEVGALP 131
           PKLIEVGALP
Sbjct: 121 PKLIEVGALP 130

BLAST of Lag0004152 vs. NCBI nr
Match: XP_004142929.1 (glutaredoxin-C6 [Cucumis sativus] >KGN62384.1 hypothetical protein Csa_018651 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 3.8e-58
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0

Query: 1   MHRCTNDVVFSEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MHR TND V  EFPPSPTSSSSLSIDVDESSETRIRRLIT+HPVIIFSRSSCSMCHVMKT
Sbjct: 1   MHRSTNDAVSFEFPPSPTSSSSLSIDVDESSETRIRRLITDHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLA IGVHPTVIE+D+HDEIAAVPSSSFV+DSSAPAVFIGGASFGGLE+LVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIEVDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLV 120

Query: 121 PKLIEVGALPV 132
           PKLIEVGALPV
Sbjct: 121 PKLIEVGALPV 131

BLAST of Lag0004152 vs. NCBI nr
Match: KAA0061003.1 (glutaredoxin-C6-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-57
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0

Query: 1   MHRCTNDVVFSEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60
           M R TND V  EFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MRRSTNDAVSFEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLA IGVHPTVIE+D+HDEIAAVPSSSFV+DSSAPAVFIGGASFGGLE+LVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIEVDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLV 120

Query: 121 PKLIEVGALPV 132
           PKLIEVGALPV
Sbjct: 121 PKLIEVGALPV 131

BLAST of Lag0004152 vs. NCBI nr
Match: XP_008444458.1 (PREDICTED: glutaredoxin-C6-like isoform X2 [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-57
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0

Query: 1   MHRCTNDVVFSEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60
           M R TND V  EFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MRRSTNDAVSFEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLA IGVHPTVIE+D+HDEIAAVPSSSFV+DSSAPAVFIGGASFGGLE+LVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIEVDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLV 120

Query: 121 PKLIEVGALPV 132
           PKLIEVGALPV
Sbjct: 121 PKLIEVGALPV 131

BLAST of Lag0004152 vs. ExPASy Swiss-Prot
Match: Q8L9S3 (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 7.2e-36
Identity = 88/139 (63.31%), Postives = 108/139 (77.70%), Query Frame = 0

Query: 1   MHRCTNDVVFSEF-PPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMK 60
           + R +NDVV  +  PPS TSS+SLSID +ES+E +IRRLI+EHPVIIFSRSSC MCHVMK
Sbjct: 7   LQRFSNDVVRLDLTPPSQTSSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHVMK 66

Query: 61  TLLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSA---------PAVFIGGASFGGLETL 120
            LLATIGV PTVIELD+H E++++P++  +QD  +         PAVFIG    GGLE+L
Sbjct: 67  RLLATIGVIPTVIELDDH-EVSSLPTA--LQDEYSGGVSVVGPPPAVFIGRECVGGLESL 126

Query: 121 VALHLSGHLVPKLIEVGAL 130
           VALHLSG LVPKL++VGAL
Sbjct: 127 VALHLSGQLVPKLVQVGAL 142

BLAST of Lag0004152 vs. ExPASy Swiss-Prot
Match: Q29PZ1 (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.5e-30
Identity = 77/147 (52.38%), Postives = 101/147 (68.71%), Query Frame = 0

Query: 1   MHRCTNDVVFSEF-----------PPSP------TSSSSLSIDVDESSETRIRRLITEHP 60
           +  C+ND V  +            PP+P      T+S+SLS D +E+SE++I RLI+EHP
Sbjct: 7   LRNCSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHP 66

Query: 61  VIIFSR-SSCSMCHVMKTLLATIGVHPTVIELDEHDEIAAVPSSSFVQDSSAPAVFIGGA 120
           VIIF+R SSC MCHVMK LL+T+GVHPTVIE+D+  EIA      ++   +AP +FIGG 
Sbjct: 67  VIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDD-GEIA------YLAVEAAPVLFIGGT 126

Query: 121 SFGGLETLVALHLSGHLVPKLIEVGAL 130
             GG E+LVALHLSG L+P+L+EVGAL
Sbjct: 127 CVGGFESLVALHLSGQLIPRLVEVGAL 146

BLAST of Lag0004152 vs. ExPASy Swiss-Prot
Match: Q0DK35 (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-22
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 29  ESSETRIRRLITEHPVIIFSRSSCSMCHVMKTLLATIGVHPTVIELDEHDEIAAVPSSSF 88
           E    RI RL+ E PV+IF+R  C MCHVM+ LLA +G H TVIELDE  E AA   +S 
Sbjct: 39  EQPAERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEAA---ASA 98

Query: 89  VQDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
              ++ PA+F+GGA  GGL+ L+ LHLSG LVP+L EVGAL
Sbjct: 99  AAAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136

BLAST of Lag0004152 vs. ExPASy Swiss-Prot
Match: Q5SMY5 (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-18
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 0

Query: 22  SLSID---VDESSETRIRRLITEHPVIIFSRSSCSMCHVMKTLLATIGVHPTVIELD--- 81
           SL+ID    +E+   R+ RL+ E PV++F+R  C M HVM+ LLA +G H TVIEL+   
Sbjct: 15  SLTIDPAGEEEAPAERVGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGGA 74

Query: 82  EHDEIAAVPSSSFVQDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
             +E AA+        ++ PA+F+GG   GGLE L+ LHLSG LVP+L EVGAL
Sbjct: 75  AEEEEAALGGG-----AALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123

BLAST of Lag0004152 vs. ExPASy Swiss-Prot
Match: Q9SGP6 (Glutaredoxin-C9 OS=Arabidopsis thaliana OX=3702 GN=GRXC9 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-16
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 23  LSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKTLLATIGVHPTVIELDE--HDEI 82
           LS+    + E R+R ++ E+ VI+  R  C MCHV++ LL  +GV+P V+E+DE   DE+
Sbjct: 24  LSLKTQGNGE-RVRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDEEREDEV 83

Query: 83  AAVPSSSFVQDSSA----PAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            +   +  VQ        PAV++GG  FGGL+ ++A H+SG LVP L EVGAL
Sbjct: 84  LSELENIGVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGAL 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885533.12.0e-5993.13glutaredoxin-C6-like isoform X1 [Benincasa hispida][more]
XP_038885534.14.5e-5993.08glutaredoxin-C6-like isoform X2 [Benincasa hispida][more]
XP_004142929.13.8e-5892.37glutaredoxin-C6 [Cucumis sativus] >KGN62384.1 hypothetical protein Csa_018651 [C... [more]
KAA0061003.11.4e-5792.37glutaredoxin-C6-like isoform X2 [Cucumis melo var. makuwa][more]
XP_008444458.11.4e-5792.37PREDICTED: glutaredoxin-C6-like isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q8L9S37.2e-3663.31Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2[more]
Q29PZ14.5e-3052.38Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1[more]
Q0DK354.6e-2256.44Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1[more]
Q5SMY53.1e-1848.25Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2... [more]
Q9SGP64.9e-1643.36Glutaredoxin-C9 OS=Arabidopsis thaliana OX=3702 GN=GRXC9 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014025Glutaredoxin subgroupPRINTSPR00160GLUTAREDOXINcoord: 87..100
score: 26.19
coord: 44..62
score: 35.09
coord: 101..114
score: 31.55
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 25..130
e-value: 2.8E-24
score: 86.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25
NoneNo IPR availablePANTHERPTHR10168:SF56GLUTAREDOXIN-C6coord: 7..129
NoneNo IPR availablePROSITEPS51354GLUTAREDOXIN_2coord: 32..130
score: 18.27824
NoneNo IPR availableCDDcd03419GRX_GRXh_1_2_likecoord: 43..122
e-value: 1.33028E-26
score: 92.988
IPR011905Glutaredoxin-like, plant IITIGRFAMTIGR02189TIGR02189coord: 35..129
e-value: 3.2E-32
score: 108.4
IPR011905Glutaredoxin-like, plant IIPANTHERPTHR10168GLUTAREDOXINcoord: 7..129
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 44..101
e-value: 1.2E-8
score: 35.1
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 32..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004152.1Lag0004152.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0097573 glutathione oxidoreductase activity