Lag0004137 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004137
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	17.9 kDa class II heat shock protein-like
Location	chr6: 1363325 .. 1363798 (+)
RNA-Seq Expression	Lag0004137
Synteny	Lag0004137

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCAGAATCATCGATTCTCCTCTGTTTGCCACTCTCCACCAAATCATCGACACGGCAGACGGCGGCGCAGGAAAGTTGGCCACCGCCCCGGCCCGGACTTACGTACGCGATGCGACGGCCATGGCCGCCACTCCGGCAGACGTGATCGAGTACCCGGATTGCTTTGTTTTCGCGATCGACATGCCGGGATTGAAATCGGAGGAAATTAGGGTTCAGGTTGAGGACGAGAATCTGCTTCTGATCAGCGGCGAGAGGAAGAGGAAGATCGAGGAGGAGAAAGAAGGGGCGAAGTATTTGAGAGTGGAGAGGAGAATCGGAAAATTCATGAGGAAATTTTTGTTGCCGGAAAACGCCGATTCTAACGCCGTATCGGCGGTGTGCCACGACGGCGTTCTCACCGTGACTGTTCCGAAACTGCCGCCTCCGGCGCCGAAGAAGCCCAAGACGATTGAGATTAAGATGGCTTAA

mRNA sequence

ATGGATTTCAGAATCATCGATTCTCCTCTGTTTGCCACTCTCCACCAAATCATCGACACGGCAGACGGCGGCGCAGGAAAGTTGGCCACCGCCCCGGCCCGGACTTACGTACGCGATGCGACGGCCATGGCCGCCACTCCGGCAGACGTGATCGAGTACCCGGATTGCTTTGTTTTCGCGATCGACATGCCGGGATTGAAATCGGAGGAAATTAGGGTTCAGGTTGAGGACGAGAATCTGCTTCTGATCAGCGGCGAGAGGAAGAGGAAGATCGAGGAGGAGAAAGAAGGGGCGAAGTATTTGAGAGTGGAGAGGAGAATCGGAAAATTCATGAGGAAATTTTTGTTGCCGGAAAACGCCGATTCTAACGCCGTATCGGCGGTGTGCCACGACGGCGTTCTCACCGTGACTGTTCCGAAACTGCCGCCTCCGGCGCCGAAGAAGCCCAAGACGATTGAGATTAAGATGGCTTAA

Coding sequence (CDS)

ATGGATTTCAGAATCATCGATTCTCCTCTGTTTGCCACTCTCCACCAAATCATCGACACGGCAGACGGCGGCGCAGGAAAGTTGGCCACCGCCCCGGCCCGGACTTACGTACGCGATGCGACGGCCATGGCCGCCACTCCGGCAGACGTGATCGAGTACCCGGATTGCTTTGTTTTCGCGATCGACATGCCGGGATTGAAATCGGAGGAAATTAGGGTTCAGGTTGAGGACGAGAATCTGCTTCTGATCAGCGGCGAGAGGAAGAGGAAGATCGAGGAGGAGAAAGAAGGGGCGAAGTATTTGAGAGTGGAGAGGAGAATCGGAAAATTCATGAGGAAATTTTTGTTGCCGGAAAACGCCGATTCTAACGCCGTATCGGCGGTGTGCCACGACGGCGTTCTCACCGTGACTGTTCCGAAACTGCCGCCTCCGGCGCCGAAGAAGCCCAAGACGATTGAGATTAAGATGGCTTAA

Protein sequence

MDFRIIDSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFVFAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPENADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA

Homology

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BLAST of Lag0004137 vs. NCBI nr
Match: XP_022131987.1 (17.9 kDa class II heat shock protein-like [Momordica charantia])

HSP 1 Score: 247.3 bits (630), Expect = 8.9e-62
Identity = 125/157 (79.62%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDFRIIDSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFVFA 60
           MDFRI+DSPLF+TL Q++D ADGGAGK  T P R YVRDATAMAATP D IEYP+ +VFA
Sbjct: 1   MDFRILDSPLFSTLQQMVDMADGGAGKPITGPTRAYVRDATAMAATPVDXIEYPNSYVFA 60

Query: 61  IDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPENA 120
           IDMPG KS EIRVQVEDEN+LLI+GERKR  EEEKE AKYLR+ERRIGKFMRKF+LPENA
Sbjct: 61  IDMPGAKSGEIRVQVEDENVLLITGERKR--EEEKESAKYLRMERRIGKFMRKFMLPENA 120

Query: 121 DSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           D+NAV+AVCHDGVLTVTV KLPPP PKKPKTIE+++A
Sbjct: 121 DTNAVTAVCHDGVLTVTVQKLPPPEPKKPKTIEVQIA 155

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BLAST of Lag0004137 vs. NCBI nr
Match: CAA2997598.1 (kda class ii heat shock [Olea europaea subsp. europaea])

HSP 1 Score: 224.6 bits (571), Expect = 6.2e-55
Identity = 111/159 (69.81%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MDFRII--DSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFV 60
           MDFR++  D+PLF TLH ++D+A+ G  +  +AP RTYVRDA AMAATPAD+ EYP+ +V
Sbjct: 1   MDFRLMGFDTPLFHTLHHLVDSAEDGENRSMSAPTRTYVRDAKAMAATPADIKEYPNSYV 60

Query: 61  FAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPE 120
           F +DMPGLKS +I+VQVED+N+LLISGERKR  +EEKEGAKY+R+ERR+GKFMRKF+LPE
Sbjct: 61  FIVDMPGLKSNDIKVQVEDDNVLLISGERKR--DEEKEGAKYVRMERRVGKFMRKFVLPE 120

Query: 121 NADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           NA++NA+SAVC DGVL VTV KLPPP PKKPKTIE+K+A
Sbjct: 121 NANTNAISAVCQDGVLAVTVQKLPPPEPKKPKTIEVKIA 157

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BLAST of Lag0004137 vs. NCBI nr
Match: XP_019437835.1 (PREDICTED: 17.1 kDa class II heat shock protein-like [Lupinus angustifolius] >OIW14948.1 hypothetical protein TanjilG_30667 [Lupinus angustifolius])

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 118/159 (74.21%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MDFRII--DSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFV 60
           MD R++  DSPLF TLHQI+D  D  A K   AP+RTYVRDA AMAATPADV EYP  FV
Sbjct: 1   MDLRLLGFDSPLFNTLHQIMDLTDENAEKNLNAPSRTYVRDAKAMAATPADVKEYPKSFV 60

Query: 61  FAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPE 120
           F IDMPGLKS +I+VQVEDEN+LLISGERKR  EEEKEG KYLR+ERR+GKFMRKF+LPE
Sbjct: 61  FVIDMPGLKSGDIKVQVEDENVLLISGERKR--EEEKEGGKYLRMERRVGKFMRKFVLPE 120

Query: 121 NADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           NA++++VSAVC DGVLTVTV KLPPP PKKPKTIE+ +A
Sbjct: 121 NANTDSVSAVCQDGVLTVTVEKLPPPEPKKPKTIEVHIA 157

[Close]

BLAST of Lag0004137 vs. NCBI nr
Match: XP_030501888.1 (17.9 kDa class II heat shock protein [Cannabis sativa] >KAF4351361.1 hypothetical protein F8388_022736 [Cannabis sativa] >KAF4399184.1 hypothetical protein G4B88_023778 [Cannabis sativa])

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 118/161 (73.29%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 1   MDFRI--IDSPLFATLHQIIDTADGGA--GKLATAPARTYVRDATAMAATPADVIEYPDC 60
           MDFRI  +DSPLF TL+Q+ID ++  A   K   AP RTYVRDA AMAATPADV EYP+ 
Sbjct: 1   MDFRILGLDSPLFTTLNQMIDNSEDSADHSKSINAPTRTYVRDAKAMAATPADVKEYPNS 60

Query: 61  FVFAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLL 120
           +VF IDMPGLKS +I+VQVED+N+LLISGERKR  EEEKEGAKY+R+ERR+GKFMRKF+L
Sbjct: 61  YVFIIDMPGLKSGDIKVQVEDDNVLLISGERKR--EEEKEGAKYVRMERRVGKFMRKFVL 120

Query: 121 PENADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           PENAD++A+SAVC DGVLTVTV KLPPP PKKPKTIE+K+A
Sbjct: 121 PENADTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKIA 159

[Close]

BLAST of Lag0004137 vs. NCBI nr
Match: PON71733.1 (Small heat shock protein HSP [Parasponia andersonii])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 117/160 (73.12%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MDFRII--DSPLFATLHQIIDTADGGAG-KLATAPARTYVRDATAMAATPADVIEYPDCF 60
           MDFRI+  DSPLF+TLH +ID +D  A  +   AP RTYVRDA AMA+TPADV EYP+ +
Sbjct: 1   MDFRIVGLDSPLFSTLHHMIDASDDAADHRSFNAPTRTYVRDAKAMASTPADVKEYPNSY 60

Query: 61  VFAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLP 120
           VF IDMPGLKSE+I+VQVE++N+LLISGERKR  EEEKEGAKY+R+ERRIGKFMRKF+LP
Sbjct: 61  VFIIDMPGLKSEDIKVQVEEDNVLLISGERKR--EEEKEGAKYVRMERRIGKFMRKFVLP 120

Query: 121 ENADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           ENA+++A+SAVC DGVLTVTV KLPPP PKKPKTIE+K+A
Sbjct: 121 ENANTDAISAVCQDGVLTVTVRKLPPPEPKKPKTIEVKIA 158

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BLAST of Lag0004137 vs. ExPASy Swiss-Prot
Match: P05477 (17.9 kDa class II heat shock protein OS=Glycine max OX=3847 GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.0e-53
Identity = 109/161 (67.70%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MDFRI--IDSPLFATLHQIIDTADGGAG--KLATAPARTYVRDATAMAATPADVIEYPDC 60
           MDFR+  ++SPLF TL  ++D ++ GAG  K   AP  +YVRDA AMAATPADV EYP+ 
Sbjct: 1   MDFRVMGLESPLFHTLQHMMDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNS 60

Query: 61  FVFAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLL 120
           +VF IDMPGLKS +I+VQVED+NLLLI GERKR  +EEKEGAKYLR+ERR+GK MRKF+L
Sbjct: 61  YVFEIDMPGLKSGDIKVQVEDDNLLLICGERKR--DEEKEGAKYLRMERRVGKLMRKFVL 120

Query: 121 PENADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           PENA+++A+SAVC DGVL+VTV KLPPP PKKP+TI++K+A
Sbjct: 121 PENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159

[Close]

BLAST of Lag0004137 vs. ExPASy Swiss-Prot
Match: P19242 (17.1 kDa class II heat shock protein OS=Pisum sativum OX=3888 GN=HSP17.7 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-52
Identity = 106/152 (69.74%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 6   IDSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFVFAIDMPG 65
           +DSPLF TLH I+D  D    K   AP RTYVRDA AMAATPADV E+P+ +VF +DMPG
Sbjct: 3   LDSPLFNTLHHIMDLTDDTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPG 62

Query: 66  LKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPENADSNAV 125
           +KS +I+VQVEDEN+LLISGERKR  EEEKEG KYL++ERRIGK MRKF+LPENA+  A+
Sbjct: 63  VKSGDIKVQVEDENVLLISGERKR--EEEKEGVKYLKMERRIGKLMRKFVLPENANIEAI 122

Query: 126 SAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           SA+  DGVLTVTV KLPPP PKKPKTI++K+A
Sbjct: 123 SAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152

[Close]

BLAST of Lag0004137 vs. ExPASy Swiss-Prot
Match: O82013 (17.3 kDa class II heat shock protein OS=Solanum peruvianum OX=4082 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.3e-51
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MDFRII---DSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCF 60
           MD R++   ++PLF TLH +++ A   +     AP++ YVRDA AMAATPADV EYP+ +
Sbjct: 1   MDLRLLGIDNTPLFHTLHHMMEAAGEDS---VNAPSKIYVRDAKAMAATPADVKEYPNSY 60

Query: 61  VFAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLP 120
           VF +DMPGLKS +I+VQVE++N+LLISGERKR  EEEKEGAK++R+ERR+GKFMRKF LP
Sbjct: 61  VFVVDMPGLKSGDIKVQVEEDNVLLISGERKR--EEEKEGAKFIRMERRVGKFMRKFSLP 120

Query: 121 ENADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           ENA+++A+SAVC DGVLTVTV KLPPP PKKPKTIE+K+A
Sbjct: 121 ENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155

[Close]

BLAST of Lag0004137 vs. ExPASy Swiss-Prot
Match: Q08275 (17.0 kDa class II heat shock protein OS=Zea mays OX=4577 GN=HSP18 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-46
Identity = 100/159 (62.89%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MDFRI--IDSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFV 60
           MD R+  +++P  A LH ++D  DG   K      RTYVRDA AMAATPADV E    + 
Sbjct: 1   MDARMFGLETPRVAALHHLLDVPDG--DKAGGGATRTYVRDARAMAATPADVKELAGAYA 60

Query: 61  FAIDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPE 120
           F +DMPGL + +IRVQVEDE +L+ISGER+R   EE+E AKYLR+ERR+GKFMRKF+LP+
Sbjct: 61  FVVDMPGLSTGDIRVQVEDERVLVISGERRR---EEREDAKYLRMERRMGKFMRKFVLPD 120

Query: 121 NADSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           NAD + V+AVC DGVLTVTV KLPPP PKKPKTIEIK+A
Sbjct: 121 NADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154

[Close]

BLAST of Lag0004137 vs. ExPASy Swiss-Prot
Match: O81822 (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-45
Identity = 88/157 (56.05%), Postives = 122/157 (77.71%), Query Frame = 0


Query: 1   MDFRIIDSPLFATLHQIIDTADGGAGKLATAPARTYVRDATAMAATPADVIEYPDCFVFA 60
           MD      P+F+ L  +++  +    K    P+R Y+RDA AMAATPADVIE+PD +VFA
Sbjct: 1   MDLEFGRFPIFSILEDMLEAPEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFA 60

Query: 61  IDMPGLKSEEIRVQVEDENLLLISGERKRKIEEEKEGAKYLRVERRIGKFMRKFLLPENA 120
           +DMPG+K +EI+VQ+E+EN+L++SG+R+R   +E EG K++R+ERR+GKFMRKF LP+NA
Sbjct: 61  VDMPGIKGDEIQVQIENENVLVVSGKRQRD-NKENEGVKFVRMERRMGKFMRKFQLPDNA 120

Query: 121 DSNAVSAVCHDGVLTVTVPKLPPPAPKKPKTIEIKMA 158
           D   +SA C+DGVL VT+PKLPPP PKKPKTI++++A
Sbjct: 121 DLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156

The following BLAST results are available for this feature:

BLAST of Lag0004137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131987.1	8.9e-62	79.62	17.9 kDa class II heat shock protein-like [Momordica charantia]	[more]
CAA2997598.1	6.2e-55	69.81	kda class ii heat shock [Olea europaea subsp. europaea]	[more]
XP_019437835.1	1.0e-54	74.21	PREDICTED: 17.1 kDa class II heat shock protein-like [Lupinus angustifolius] >OI...	[more]
XP_030501888.1	1.0e-54	73.29	17.9 kDa class II heat shock protein [Cannabis sativa] >KAF4351361.1 hypothetica...	[more]
PON71733.1	1.4e-54	73.13	Small heat shock protein HSP [Parasponia andersonii]	[more]

BLAST of Lag0004137 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05477	6.0e-53	67.70	17.9 kDa class II heat shock protein OS=Glycine max OX=3847 GN=HSP17.9-D PE=3 SV...	[more]
P19242	3.9e-52	69.74	17.1 kDa class II heat shock protein OS=Pisum sativum OX=3888 GN=HSP17.7 PE=1 SV...	[more]
O82013	4.3e-51	65.63	17.3 kDa class II heat shock protein OS=Solanum peruvianum OX=4082 PE=2 SV=1	[more]
Q08275	5.4e-46	62.89	17.0 kDa class II heat shock protein OS=Zea mays OX=4577 GN=HSP18 PE=2 SV=1	[more]
O81822	1.2e-45	56.05	17.7 kDa class II heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.7 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 4..155 e-value: 2.3E-36 score: 126.7
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 31..149
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 50..155 e-value: 2.4E-30 score: 104.7
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 39..157 score: 30.065739
None	No IPR available	PANTHER	PTHR11527:SF277	17.6 KDA CLASS II HEAT SHOCK PROTEIN-RELATED	coord: 6..157
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	HEAT-SHOCK PROTEIN 20 FAMILY MEMBER	coord: 6..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004137.1	Lag0004137.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm