Lag0004133 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004133
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAnkyrin repeat-containing protein-like
Locationchr6: 1348744 .. 1349298 (+)
RNA-Seq ExpressionLag0004133
SyntenyLag0004133
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGAAAGCTCGAAGATGCATCAGTACTATCTTTAGAAACTGAAACAAGAAATGGAAACGATAGAGAAGATCAGAAGAAGAACAACATCAGCTGGCAGCAACGGGATAGGGATTTTCTAATGGTGGCAACAACATTCATCGCCGCCATGGCCTTCCTAGCCGGAACCAACCCTCCCGGCGGCGTATGGCAAGACGACAACAGCCCCAAATATGAAGCAGGCAAATCCATAATGGCCACAAAATCGCCATCTCAATTCATCAGTTTCATGGCTGGCGTTACTGTCTGCTTTGCATGTTCAGCCATGCAGCTTATTGTGCTGTTGGTTAAGTCGCCGGACAAAAGTTGGTCGGTTTCGAGAAGCTTTCTGTACTTGACGATGGGCTCGGCTGTATCATCCATGGTTGTGGCTTATTGGTCGTCTGTAAAAGCTTTGACGCCGGACTCACAGATGTATAATGTCGTCGTTATGCTCTGGATTACTCTTGGAGTCTCTGTTGTTGTGCTCCCAATTTCAATGTGCCTGGAGAAAGGACGACTTTCTTCATCTTGA

mRNA sequence

ATGTCAAGAAAGCTCGAAGATGCATCAGTACTATCTTTAGAAACTGAAACAAGAAATGGAAACGATAGAGAAGATCAGAAGAAGAACAACATCAGCTGGCAGCAACGGGATAGGGATTTTCTAATGGTGGCAACAACATTCATCGCCGCCATGGCCTTCCTAGCCGGAACCAACCCTCCCGGCGGCGTATGGCAAGACGACAACAGCCCCAAATATGAAGCAGGCAAATCCATAATGGCCACAAAATCGCCATCTCAATTCATCAGTTTCATGGCTGGCGTTACTGTCTGCTTTGCATGTTCAGCCATGCAGCTTATTGTGCTGTTGGTTAAGTCGCCGGACAAAAGTTGGTCGGTTTCGAGAAGCTTTCTGTACTTGACGATGGGCTCGGCTGTATCATCCATGGTTGTGGCTTATTGGTCGTCTGTAAAAGCTTTGACGCCGGACTCACAGATGTATAATGTCGTCGTTATGCTCTGGATTACTCTTGGAGTCTCTGTTGTTGTGCTCCCAATTTCAATGTGCCTGGAGAAAGGACGACTTTCTTCATCTTGA

Coding sequence (CDS)

ATGTCAAGAAAGCTCGAAGATGCATCAGTACTATCTTTAGAAACTGAAACAAGAAATGGAAACGATAGAGAAGATCAGAAGAAGAACAACATCAGCTGGCAGCAACGGGATAGGGATTTTCTAATGGTGGCAACAACATTCATCGCCGCCATGGCCTTCCTAGCCGGAACCAACCCTCCCGGCGGCGTATGGCAAGACGACAACAGCCCCAAATATGAAGCAGGCAAATCCATAATGGCCACAAAATCGCCATCTCAATTCATCAGTTTCATGGCTGGCGTTACTGTCTGCTTTGCATGTTCAGCCATGCAGCTTATTGTGCTGTTGGTTAAGTCGCCGGACAAAAGTTGGTCGGTTTCGAGAAGCTTTCTGTACTTGACGATGGGCTCGGCTGTATCATCCATGGTTGTGGCTTATTGGTCGTCTGTAAAAGCTTTGACGCCGGACTCACAGATGTATAATGTCGTCGTTATGCTCTGGATTACTCTTGGAGTCTCTGTTGTTGTGCTCCCAATTTCAATGTGCCTGGAGAAAGGACGACTTTCTTCATCTTGA

Protein sequence

MSRKLEDASVLSLETETRNGNDREDQKKNNISWQQRDRDFLMVATTFIAAMAFLAGTNPPGGVWQDDNSPKYEAGKSIMATKSPSQFISFMAGVTVCFACSAMQLIVLLVKSPDKSWSVSRSFLYLTMGSAVSSMVVAYWSSVKALTPDSQMYNVVVMLWITLGVSVVVLPISMCLEKGRLSSS
Homology
BLAST of Lag0004133 vs. NCBI nr
Match: XP_016899921.1 (PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 4.2e-63
Identity = 137/185 (74.05%), Postives = 159/185 (85.95%), Query Frame = 0

Query: 1   MSRKLEDASVLSLET-ETRNGNDREDQ-KKNNISWQQRDRDFLMVATTFIAAMAFLAGTN 60
           MSRK+ED SVLS+ET +T N  D+E+Q KK     + RDRDFLMVATTFIAAMAF AGTN
Sbjct: 1   MSRKVEDESVLSIETDQTINEKDKENQKKKKKKEGEGRDRDFLMVATTFIAAMAFQAGTN 60

Query: 61  PPGGVWQDDNSPKYEAGKSIMATKSPSQFISFMAGVTVCFACSAMQLIVLLVKSPDKSWS 120
           PPGGVWQDDNSP YEAGKSIMATKSPS FISFM+GVTVCFACSAMQ IVLL KS +KSWS
Sbjct: 61  PPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACSAMQFIVLLGKSSEKSWS 120

Query: 121 VSRSFLYLTMGSAVSSMVVAYWSSVKALTPDSQMYNVVVMLWITLGVSVVVLPISMCLEK 180
           VS+SF+Y TMGS +S++VVAYWS++KALTP++QM +V+VML  TL +SVVVLPISM +EK
Sbjct: 121 VSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLKTTLVLSVVVLPISMYIEK 180

Query: 181 GRLSS 184
            RL+S
Sbjct: 181 KRLAS 185

BLAST of Lag0004133 vs. NCBI nr
Match: KAA0064719.1 (ankyrin repeat-containing protein-like [Cucumis melo var. makuwa] >TYK00739.1 ankyrin repeat-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 6.7e-53
Identity = 112/142 (78.87%), Postives = 128/142 (90.14%), Query Frame = 0

Query: 42  MVATTFIAAMAFLAGTNPPGGVWQDDNSPKYEAGKSIMATKSPSQFISFMAGVTVCFACS 101
           MVATTFIAAMAF AGTNPPGGVWQDDNSP YEAGKSIMATKSPS FISFM+GVTVCFACS
Sbjct: 1   MVATTFIAAMAFQAGTNPPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACS 60

Query: 102 AMQLIVLLVKSPDKSWSVSRSFLYLTMGSAVSSMVVAYWSSVKALTPDSQMYNVVVMLWI 161
           AMQ IVLL KS +KSWSVS+SF+Y TMGS +S++VVAYWS++KALTP++QM +V+VML  
Sbjct: 61  AMQFIVLLGKSSEKSWSVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLKT 120

Query: 162 TLGVSVVVLPISMCLEKGRLSS 184
           TL +SVVVLPISM +EK RL+S
Sbjct: 121 TLVLSVVVLPISMYIEKKRLAS 142

BLAST of Lag0004133 vs. NCBI nr
Match: XP_038884181.1 (uncharacterized protein LOC120075089 [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-36
Identity = 90/173 (52.02%), Postives = 118/173 (68.21%), Query Frame = 0

Query: 2   SRKLEDASVLSLETETRNGNDREDQKKNNISWQQRDRDFLMVATTFIAAMAFLAGTNPPG 61
           ++K E+A+ +S++TE  +  DRE+    N  W +RD DF+MV  TFIA +AF AGTNPPG
Sbjct: 6   AKKDEEATAVSIDTERESRKDREEA---NQGWIERDVDFVMVIVTFIATVAFQAGTNPPG 65

Query: 62  GVWQDD---NSPKYEAGKSIMATKSPSQFISFMAGVTVCFACSAMQLIVLLVKSPDKSWS 121
           GVWQ+D   N   Y AGKSIM TKSPS++I FM GVTVC A S +QLIV+L     KSWS
Sbjct: 66  GVWQEDKKVNGTDYIAGKSIMGTKSPSEYIKFMVGVTVCLAFSVIQLIVMLFNWYLKSWS 125

Query: 122 VSRSFLYLTMGSAVSSMVVAYWSSVKALTPDSQMYNVVVMLWITLGVSVVVLP 172
           + R+ LY+ M   ++ MVVA+WSS+ ALTP   M  +    W  +GVS++VLP
Sbjct: 126 IRRAILYMLMLLTITPMVVAFWSSLLALTPADLMTEIKAGFWSVIGVSLIVLP 175

BLAST of Lag0004133 vs. NCBI nr
Match: XP_011657373.1 (uncharacterized protein LOC105435852 [Cucumis sativus] >KGN47597.1 hypothetical protein Csa_019050 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-32
Identity = 92/183 (50.27%), Postives = 117/183 (63.93%), Query Frame = 0

Query: 7   DASVLSLETETRNGNDREDQKKNNISWQQRDRDFLMVATTFIAAMAFLAGTNPPGGVWQ- 66
           ++  ++++T    G+++     NN +W + D DFLMV TTFIA +AF  GTNPPGGVWQ 
Sbjct: 10  ESVAITIDTTDDTGHEKNKMMNNN-NWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQE 69

Query: 67  DDNSPKYEAGKSIMATKSPSQFISFMAGVTVCFACSAMQLIVLLVKS---PDKSWSVSRS 126
           DD   KY AGKSIMATKSPS FI F+  +T CF  SAMQ  VL +K      K+WS SR 
Sbjct: 70  DDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRF 129

Query: 127 FLYLTMGSAVSSMVVAYWSSVKALTPDSQMYNVVVMLWIT-LGVSVVVLPISMCLEKGRL 185
            LY TMG AVSSM  AY  SV+A TPDS+   + V+ +IT LG  + +  IS+ L+    
Sbjct: 130 ILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLGFPISLAAISIYLQYFSK 189

BLAST of Lag0004133 vs. NCBI nr
Match: XP_008445596.1 (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo] >KAA0064718.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00738.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-32
Identity = 93/189 (49.21%), Postives = 118/189 (62.43%), Query Frame = 0

Query: 1   MSRKLEDASVLSLETETRNGNDREDQKKNNISWQQRDRDFLMVATTFIAAMAFLAGTNPP 60
           MSR+   A  +++  +T      +++  NN +W + D DFLMV TTFIA +AF  GTNPP
Sbjct: 1   MSRQNNGAESVAITIDTTETGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPP 60

Query: 61  GGVWQ-DDNSPKYEAGKSIMATKSPSQFISFMAGVTVCFACSAMQLIVLLVKS---PDKS 120
           GGVWQ DD   KY AGKSIMATKSPS F  ++  +T CF  SAMQ  VL +K      K+
Sbjct: 61  GGVWQEDDKQGKYFAGKSIMATKSPSDFSGYLVTITACFVFSAMQFAVLFLKKWPVGAKN 120

Query: 121 WSVSRSFLYLTMGSAVSSMVVAYWSSVKALTPDSQMYNVVVMLWIT-LGVSVVVLPISMC 180
           WS SR  LY TMG A+SSM +AY  SV+A TPDS+     V+ +IT LG  + +  IS+ 
Sbjct: 121 WSFSRFILYSTMGLAISSMGIAYGCSVRAYTPDSEEKTRYVISFITMLGFPIGLAAISLY 180

Query: 181 LEKGRLSSS 185
           LE    SSS
Sbjct: 181 LEYFNKSSS 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016899921.14.2e-6374.05PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo][more]
KAA0064719.16.7e-5378.87ankyrin repeat-containing protein-like [Cucumis melo var. makuwa] >TYK00739.1 an... [more]
XP_038884181.11.5e-3652.02uncharacterized protein LOC120075089 [Benincasa hispida][more]
XP_011657373.12.9e-3250.27uncharacterized protein LOC105435852 [Cucumis sativus] >KGN47597.1 hypothetical ... [more]
XP_008445596.12.9e-3249.21PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo] >KAA0064718.1 ank... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 33..143
e-value: 7.8E-21
score: 74.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004133.1Lag0004133.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane