Lag0004118 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004118
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCytokinin riboside 5'-monophosphate phosphoribohydrolase
Locationchr6: 1260531 .. 1263216 (+)
RNA-Seq ExpressionLag0004118
SyntenyLag0004118
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTGTGATTGCAAATCATGAAATGAAGCAATCCAAGTTCATGAGGATTTGTGTGTTCTGTGGGAGTAGCCAAGGAAAGAAGAGCAATTATCAAGATTCCTCCATTGAACTCAACAAGGAATTGGTAATTTTGCTGTTTTCTATGACTATGTTATCGATTTCCCATTTTTCTGGATTGCCCATTTCTCAGTTGAGAAAAATTATTGGAGGTGTTTTGTGTTTGATGATGTTACAGATTATTCTACATTTCTTTCCTTCACTTGAATGTTGTGATGAACTTTATTGTGAATGTATGTTGTTTGTTTTGATGATCGAATCCTTTAGTTTTATTTCTTCCATTGATGTTCAGTTGGGATGCCTTGTGATTGTGTCCACAACGTGTTTGTGATTATGCTCGATCATGACCCTTTACTTTTTTTCCGCTAAAATCTTCCCCAAATTTGAACTTTCCTCTTCCATTTCCCATTAGAAATTGAAATTACAAAGAAAATCATCTCATTAGGTTATAGTTTGTTTTTTAAATCAAATGAGCATTCAAACAAAGCTCATTTGTCTGTTTCTTCTGCTATGTCAATCTTTGAGAACTCCATCCTAACTGGGGTTCCGCACATGAGAAAAAAAATTCCCTTTTTGACCTTTTTGAATTGGGTTTAAGGGTTTTTTTTTTGTTGGGCAAGGACAAAAGTCTAGTGGCAATAATAGATCCCAGCAATAGAGTCTCTTTTAGCCTAGAATTCTTCAAGGTTCTTCCCAATTCTAGTTCTCAGTGTATGGTATATACGCTTTACTTTCCCTCTACTCTTTCAATCTCTCTTTCTTTTTCTATTCTTGGTGGAATTAGACAAATATGTGTGCCTCTGGAATAAGAAACTTAAATGGAGTCTCGTCTTTCTTGTGAAGTTGTATTAAATGACCACTTAAAAGCTTAAGTTGATAGCGGGAAGACTTTGTATTTATTTGTGCATTTTTAACACTCTCCCTTACATATGTACTCAAGTAAAGAATGGAGCATGGATAATGATGTTTTCCCTCACCTTTCTATTTTTGTTGTTTTATGCACATCAAAGGGTGACTTTGGCTTGGACTATTTTTTTTTTCCTGCCTACTTTATCAAGAAATATTACTTGTTCATGTCTAGTCCATGAAGTAAAATTCAAACACAATGTATCATATGAAAATTATCATGCTTGGGTTTTTGTTTCTGAAGTTTTTGTCTTTATTGGTCAACATAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGAGTTTGGTCACGAAGGTTCAAGGCATGGGAGTTCTTTTAACTAAGTAACACTACTACAAATTAAGCTTTTGATGACGGACTTCAAAAAATGTGCTGGAAAATGATGACGAACAAGGGAAAATGCATAGAAGGGACTGGAAAAAAGATTTTAAAGGATGTACAATTGTGTTTGTTTTGTACAATGAGGATGTTTGGGAATAGTAGTATAACTATGTTAAACATTAATATTACATGTAATGATAAAATGTTTGAAAGCTTTTGTGTTCTTATATATAGCTTAATGAGATATGAGATGGTGCAATTATCCTGTTTAGACGATTGTTGCTTATTAATTCTTCTGAGTTCTGATGTTTCTTCTTCGTGAATGTAGTGATTTGCGACTGGTCTTTTGCTAGAGGTATTTCAGAATTTTTTTGATCCAGGCGCCTATAATCTGACCTCAACAGTTCGTCATTGTGCATCACAAGGGAGGAAAATTGCTCTGTATAATTGCTTTAGCAGGTTTTAGTTGTAAGACATATTTTTAGTTGTAAGACAGTAGTTTCATGGTGCTCCTTTTGGTAATATCTGCCCTTTGTCTCCTCCTTTTTTATGCTTTCATTTCTGGGGGTACACTTGAATTTCATAAGTTTTTTTAAAAATTTTATTGATATTATCATCTTGGAGCCTTTATTGGAGTAAACTCTTTTTCCTCCTGTAGAACGAGTGAAATTTATCTCTACAACAATGAAATGTTGGGAGGAGAGCATCGAGCCCAACATAAATGGCATTTGATGCATAGTTGGTTCTTTTTGGTTAAGCCCTATATATTTTTTTCTTTGGGTTTAGCTCCTAATAGTATGTATATTTTTCTCATGAGGATTGTGGAAGTCAATAGTGATGCTTGGCTATTATTTTTGGATTTGCACCTAGTCACAACATTCTTGGACTTTCCAATTTAAATTAGAATAAATTATGCTTTGATTTGTTGTTAAAATCCTATGAATTTTTCTATCGATGCAGCATCTTGATCTTTCTTTATTTCAGTGTTGTCCAAATTTGTGCACTCATTAAGGAAGAGAAAGCTACGGTGAATTTGAGAAGGAAAGATGTCTATTTTGGGCTTTGTAGATGAAACCCCTTCAAATCTCAAAGGTTTCTCTCTGTTGTTTATCTCTTTATAATTACAACATTTATTTTTTATTTTGGATTGATTAAGGGGTTCTCTAAAATGAAGATTTTTTAATTGGTGATCAGGGTATTGCACGGTTGGATGCACTAACACTTTGGAACATTTTGGTAATAGATGACCTTATCATAGTTAGATGAATGTGTGAGACGGAACAAAAAGGTTTTACGATCTGTTTGGGTGATTTTGGTAATAGATGACCTTGTCATTGCTGTCGAAATTTCTAGAGCAACCGGTTAG

mRNA sequence

ATGGAGGGTGTGATTGCAAATCATGAAATGAAGCAATCCAAGTTCATGAGGATTTGTGTGTTCTGTGGGAGTAGCCAAGGAAAGAAGAGCAATTATCAAGATTCCTCCATTGAACTCAACAAGGAATTGATTATTCTACATTTCTTTCCTTCACTTGAATGTTGTGATGAACTTTATTGTGAATTGATTTGCGACTGGTCTTTTGCTAGAGATGACCTTGTCATTGCTGTCGAAATTTCTAGAGCAACCGGTTAG

Coding sequence (CDS)

ATGGAGGGTGTGATTGCAAATCATGAAATGAAGCAATCCAAGTTCATGAGGATTTGTGTGTTCTGTGGGAGTAGCCAAGGAAAGAAGAGCAATTATCAAGATTCCTCCATTGAACTCAACAAGGAATTGATTATTCTACATTTCTTTCCTTCACTTGAATGTTGTGATGAACTTTATTGTGAATTGATTTGCGACTGGTCTTTTGCTAGAGATGACCTTGTCATTGCTGTCGAAATTTCTAGAGCAACCGGTTAG

Protein sequence

MEGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELIILHFFPSLECCDELYCELICDWSFARDDLVIAVEISRATG
Homology
[Close]
BLAST of Lag0004118 vs. NCBI nr
Match: XP_023528344.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MEGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          MEGVI+NHEMK SKF RICVFCGSSQGKK +YQDS+IEL KEL+
Sbjct: 1  MEGVISNHEMKPSKFRRICVFCGSSQGKKKSYQDSAIELGKELV 44

[Close]
BLAST of Lag0004118 vs. NCBI nr
Match: XP_023528345.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MEGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          MEGVI+NHEMK SKF RICVFCGSSQGKK +YQDS+IEL KEL+
Sbjct: 1  MEGVISNHEMKPSKFRRICVFCGSSQGKKKSYQDSAIELGKELV 44

[Close]
BLAST of Lag0004118 vs. NCBI nr
Match: XP_022934050.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MEGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          MEGVIAN EMKQSKF RICVFCGSSQGKK +YQDS+IEL KEL+
Sbjct: 1  MEGVIANDEMKQSKFRRICVFCGSSQGKKKSYQDSAIELGKELV 44

[Close]
BLAST of Lag0004118 vs. NCBI nr
Match: XP_022934051.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MEGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          MEGVIAN EMKQSKF RICVFCGSSQGKK +YQDS+IEL KEL+
Sbjct: 1  MEGVIANDEMKQSKFRRICVFCGSSQGKKKSYQDSAIELGKELV 44

[Close]
BLAST of Lag0004118 vs. NCBI nr
Match: KAG6580607.1 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MEGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          MEGVIAN EMKQSKF RICVFCGSSQGKK +YQDS+IEL KEL+
Sbjct: 1  MEGVIANDEMKQSKFRRICVFCGSSQGKKKSYQDSAIELGKELV 44

[Close]
BLAST of Lag0004118 vs. ExPASy Swiss-Prot
Match: Q9LFH3 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana OX=3702 GN=LOG4 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.3e-09
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 5  IANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELII 46
          + N  M++SKF RICVFCGSSQGKKS+YQD++++L  EL++
Sbjct: 3  VNNETMQKSKFGRICVFCGSSQGKKSSYQDAAVDLGNELVL 43

[Close]
BLAST of Lag0004118 vs. ExPASy Swiss-Prot
Match: Q0JBP5 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL6 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.3e-09
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 2  EGVIANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          E V+    + QS+F RICVFCGSSQGKK +YQD+++EL KEL+
Sbjct: 14 EAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELV 56

[Close]
BLAST of Lag0004118 vs. ExPASy Swiss-Prot
Match: Q8L8B8 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana OX=3702 GN=LOG3 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-08
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 5  IANHEMKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          I    M++SKF RICVFCGSSQGKKS+YQD++++L  EL+
Sbjct: 3  IKGESMQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELV 42

[Close]
BLAST of Lag0004118 vs. ExPASy Swiss-Prot
Match: Q7XDB8 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL10 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 10 MKQSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          M+QS+F RICVFCGSSQGKK +Y D++IEL  EL+
Sbjct: 1  MRQSRFKRICVFCGSSQGKKRSYHDAAIELGNELV 35

[Close]
BLAST of Lag0004118 vs. ExPASy Swiss-Prot
Match: B9F166 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL2 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-07
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 12 QSKFMRICVFCGSSQGKKSNYQDSSIELNKELI 45
          QS+F R+CVFCGSS GKK  YQD++IEL KEL+
Sbjct: 17 QSRFRRVCVFCGSSHGKKKIYQDAAIELGKELV 49

The following BLAST results are available for this feature:
BLAST of Lag0004118 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023528344.11.3e-1181.82cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X1 [C... [more]
XP_023528345.11.3e-1181.82cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X2 [C... [more]
XP_022934050.11.3e-1184.09cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X1 [C... [more]
XP_022934051.11.3e-1184.09cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like isoform X2 [C... [more]
KAG6580607.11.3e-1184.09Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3, partial [Cucurbit... [more]
BLAST of Lag0004118 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFH38.3e-0960.98Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis tha... [more]
Q0JBP58.3e-0960.47Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza... [more]
Q8L8B81.8e-0862.50Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis tha... [more]
Q7XDB81.6e-0768.57Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryz... [more]
B9F1665.9e-0769.70Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.450coord: 4..49
e-value: 8.4E-6
score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004118.1Lag0004118.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009691 cytokinin biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0016829 lyase activity
molecular_function GO:0102682 N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity