Lag0004068 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004068
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Location	chr6: 842487 .. 844374 (+)
RNA-Seq Expression	Lag0004068
Synteny	Lag0004068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACTGAACTGAAAACAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGACGAGTTTGAAGAGTTTGAGATTAATGAAGGTATGACTTGTAAATATTTGTCTTATTTTTTTATTCCTTCCCTTGTTTGAATTCGTTTCAATTTGCATTCATTTTTCATTTATCAATGCTTGTTGTGCAATTTCTCCTTTGTTTCAGCTAAAAGAATGTGAATGTTAAGCAACGATATGGATAATCCTGTTACTGACTCAATAGTCAATTCTAACTGCTAGCTTTCTTGCATTCTTCATTTGGAATGCCCTATTACTGTTGTTTGTTCACTCATTATTTTGTTGTAAATTCTTGGAATACAGTGTGGAAGAAGAATGAGCTAGAATGTTTGTAAACTCAATTGCAATAGTAACAAACTAACAATCAGTGGAAAAAAAGTATTGATTTGGGTAAAGAAGAGCTGGAATAATGCATGGTTTTTTAAAGATATGCTCCTTAAGTATACTACCAAAAAAAAAAAGATAGCAATACATCCTCGTGTTTCTTATATATATATATATAAACAGAAAGAAAAAGAATAGTTTTTGGGAGTTGACTTCTTTCGTGACATTACATATTCCTTGTATGCTCAAAAGTACTGGGAGTGGTACATAAGGAAGTTGGTGGAATAGCTTTGGATGGAGTTTATGATTGCTTTTTGAATAATCTACAGATTTTTCTTTGATTTGGTCTTGGCAGAATTAACTTTTTCCAATTTGATGACCATAAAACCACTTCTCTTTGTTCAATGGAAGTGGGTACTTATTTATTTATTTTTATTTTTCAGAAGTGGTTATGGTTACTTGATTGTTAGGAAGAAAATAAAGAATCTTAAGTCCAATATTCAGATCATATGCATGATTGCTTGACGATGTTGTCGACTGAAACTATGATTTGAAGATCCTGCATATCCTCTAATAAGAAAAGGGTTAATGTCATAAGGAAGTTTTGGAGTTGTTTAAATGGAGCATTATAGTTTGTTGGTCTGTCAATAATAAACTCTTAATAGTCTATTAATTTTACTCCCTAAGGATGTACTCTTGTAGATGTCTCCCTTGCATAATATCGTTAACTTAATATCGTGTGTTCTATTAATCTCATTCATCACAATGTGATAGAAAAAACTACTTGCAAGTCTGGAAGTGAAGCGAAGGCTGTGATGAGATTGTCTTTACCAGTTGAGAGTGAACTTGTGACTAGAAACTGGGAGGTTGCAGAGATTTTCTTTCGGTATTGATTTAAACTAAAGAGTGTGTGCTTACTTAAGTGCACCTTGACTAATCTCATAGGACAACCCGATAAGGTTATAATATAACATGTGACTATCAAGAAGCTCATGAGACCTTATTCTAGGTAGGCGACTGCCATGAGGTTTTGAACACGTTTCCGCAATGTCTTTTATACTCTTTTACATGCACCATGAACATTAGGGCAAATCATGATAGTTCTTGTTAGAGAGCATATAGGTGGAACTTTGTAATATGTATCATGTCCTAGTCCAAGCAAACAGAGAATTCAGAGATCTTTTCCCCCTTTTCAACGTTCTTTTGCAACTCTAATCTTCCTTCTGGTGTAAAGCTTATTACTCTGCTTCTTGTTCTTGGCATGGCATCTTTTTGCTAAAAATTTCATAGTCCTTTTGTTCTTGGCATAACATCTTTAAGCATTGTGATATTTCTATGACCGTTCCTTCTGTCCTGATGGGTAAAATTGATTACAGAGTGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGATGACTGGGATGATGATGATGTCAATGACGACTTCTCATTGCAGCTTAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

mRNA sequence

ATGACAACTGAACTGAAAACAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGACGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGATGACTGGGATGATGATGATGTCAATGACGACTTCTCATTGCAGCTTAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Coding sequence (CDS)

ATGACAACTGAACTGAAAACAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGACGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGATGACTGGGATGATGATGATGTCAATGACGACTTCTCATTGCAGCTTAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Protein sequence

MTTELKTATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK

Homology

[Close]

BLAST of Lag0004068 vs. NCBI nr
Match: XP_004144232.1 (protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus] >XP_008464856.1 PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucumis melo] >KGN47541.1 hypothetical protein Csa_019014 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MTTELKTATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          M TELK A+EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of Lag0004068 vs. NCBI nr
Match: XP_023546762.1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MTTELKTATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          M TELK ATEEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELE+NAEKK
Sbjct: 61 LKRELESNAEKK 72

[Close]

BLAST of Lag0004068 vs. NCBI nr
Match: XP_022999790.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MTTELKTATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          M TE+K ATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATEMKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELE+N EKK
Sbjct: 61 LKRELESNVEKK 72

[Close]

BLAST of Lag0004068 vs. NCBI nr
Match: KAG6599102.1 (Protein DSS1-like ON CHROMOSOME V, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MTTELKTATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          M TE K ATEEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELE+NAEKK
Sbjct: 61 LKRELESNAEKK 72

[Close]

BLAST of Lag0004068 vs. NCBI nr
Match: XP_022153100.1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like [Momordica charantia] >XP_022153101.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MTTELKTATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          M TELK  TEE+KVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFS+Q
Sbjct: 1  MATELKAVTEEMKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSVQ 60

Query: 61 LKRELENNAEKK 73
          L+RELENN EKK
Sbjct: 61 LRRELENNGEKK 72

[Close]

BLAST of Lag0004068 vs. ExPASy Swiss-Prot
Match: Q9FL96 (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-20
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MTTELKTATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          M  E K A E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of Lag0004068 vs. ExPASy Swiss-Prot
Match: Q9XIR8 (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-20
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MTTELKTATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          M  E K AT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of Lag0004068 vs. ExPASy Swiss-Prot
Match: Q3ZBR6 (26S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of Lag0004068 vs. ExPASy Swiss-Prot
Match: P60896 (26S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of Lag0004068 vs. ExPASy Swiss-Prot
Match: P60897 (26S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

The following BLAST results are available for this feature:

BLAST of Lag0004068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144232.1	8.6e-28	95.83	protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus] >XP_008464856.1 PREDICTED...	[more]
XP_023546762.1	4.2e-27	94.44	protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_022999790.1	5.5e-27	93.06	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima]	[more]
KAG6599102.1	2.1e-26	93.06	Protein DSS1-like ON CHROMOSOME V, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022153100.1	2.8e-26	90.28	protein DSS1 HOMOLOG ON CHROMOSOME V-like [Momordica charantia] >XP_022153101.1 ...	[more]

BLAST of Lag0004068 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL96	4.0e-20	73.97	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) ...	[more]
Q9XIR8	6.8e-20	72.97	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1...	[more]
Q3ZBR6	7.3e-06	50.00	26S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1	[more]
P60896	7.3e-06	50.00	26S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1	[more]
P60897	7.3e-06	50.00	26S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..72
None	No IPR available	PANTHER	PTHR16771:SF8	OS01G0316800 PROTEIN	coord: 1..72
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..67 e-value: 2.3E-20 score: 83.7
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..66 e-value: 5.9E-17 score: 61.5
IPR007834	DSS1/SEM1	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004068.1	Lag0004068.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex