Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAACCATCCTGGAAGGAATCAAGGCGATAAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCGTACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAATCGGAGTTGAAGTTGATCGTCGATGACATCCTCCGAGCGACCTCACGTCTTCCTGCTGTTGAATTCAATCACTGTAATCGCCTTGCCAACACAGTAGCCCACTGGTTGGTAAGGAAATCGTCCTCCTTGTCGATGGAAGAAGATCCGACAAATCTCGGTTTAAGGGATAATGGGCATATTTTTTGGGCCCCTGAACTTCCAAATTGGTTTTCCCTCCTTTTTATGAGGGTAGTTGTATGGGTCGTTAGTCTTTAA mRNA sequence ATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAACCATCCTGGAAGGAATCAAGGCGATAAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCGTACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAATCGGAGTTGAAGTTGATCGTCGATGACATCCTCCGAGCGACCTCACGTCTTCCTGCTGTTGAATTCAATCACTGTAATCGCCTTGCCAACACAGTAGCCCACTGGTTGGTAAGGAAATCGTCCTCCTTGTCGATGGAAGAAGATCCGACAAATCTCGGTTTAAGGGATAATGGGCATATTTTTTGGGCCCCTGAACTTCCAAATTGGTTTTCCCTCCTTTTTATGAGGGTAGTTGTATGGGTCGTTAGTCTTTAA Coding sequence (CDS) ATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAACCATCCTGGAAGGAATCAAGGCGATAAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCGTACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAATCGGAGTTGAAGTTGATCGTCGATGACATCCTCCGAGCGACCTCACGTCTTCCTGCTGTTGAATTCAATCACTGTAATCGCCTTGCCAACACAGTAGCCCACTGGTTGGTAAGGAAATCGTCCTCCTTGTCGATGGAAGAAGATCCGACAAATCTCGGTTTAAGGGATAATGGGCATATTTTTTGGGCCCCTGAACTTCCAAATTGGTTTTCCCTCCTTTTTATGAGGGTAGTTGTATGGGTCGTTAGTCTTTAA Protein sequence MNHKWEIKLLEATTILEGIKAISNTCIQNGLSLQVESYALSVIKALNGEDDDQSELKLIVDDILRATSRLPAVEFNHCNRLANTVAHWLVRKSSSLSMEEDPTNLGLRDNGHIFWAPELPNWFSLLFMRVVVWVVSL
Homology
BLAST of Lag0004061 vs. NCBI nr
Match: XP_030970589.1 (uncharacterized protein LOC115990964 [Quercus lobata]) HSP 1 Score: 54.3 bits (129), Expect = 9.6e-04 Identity = 32/110 (29.09%), Postives = 61/110 (55.45%), Query Frame = 0
Query: 1 MNHKWEIKLLEATTILEGIKAISNTCIQNGLSLQVESYALSVIKALNGEDDDQSELKLIV 60
+N ++ + +EA L+ ++ N QN + +E +L +IKAL +D + S L L+V
Sbjct: 540 LNQAYKAEEIEALAALKALQLAFNLGFQNAI---LEGDSLGLIKALKADDHNLSPLGLLV 599
Query: 61 DDILRATSRLPAVEFNHCNRLANTVAHWLVRKSSSLS-----MEEDPTNL 106
+D+ A S ++ ++H R N+VAH L + + S+ ME+ P+++
Sbjct: 600 EDVKLAASNFVSLSYSHIKRNGNSVAHNLAKHTISILDFQVWMEDVPSHV 646
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_030970589.1 | 9.6e-04 | 29.09 | uncharacterized protein LOC115990964 [Quercus lobata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002156 | Ribonuclease H domain | PFAM | PF13456 | RVT_3 | coord: 2..92
e-value: 5.5E-11
score: 42.4 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
|
