Lag0004004 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004004
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr6: 340653 .. 341072 (-)
RNA-Seq Expression	Lag0004004
Synteny	Lag0004004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGTCTGGCCATTGGTAACATCAAACATAGGAATGTGGCTCTTTTATCAAAATGGATATGGAGATTTGTTTATGGAGATGAAGCTCTCAGGTGTAAAGTCATCAAAGCTAAGTATTACCCTATGGCTACCAACCAACAATGGCCTATGGTTTCAAATGAAGGTTCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAACATTGTAAAACAGAATATTAAAAGAGAATTGGGCAATGGAAATTACATATTGTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGACTTCCTTATATCCAAGACTATACAAACTTTCCACAAGTACTCATGCTTCGGTGGCCAATGTATGGAAAACTGATATTGGAGTTTGGGACATGAATTTCAGGAGAAATCTAAATGAATTCTGA

mRNA sequence

ATGGGTAGTCTGGCCATTGGTAACATCAAACATAGGAATGTGGCTCTTTTATCAAAATGGATATGGAGATTTGTTTATGGAGATGAAGCTCTCAGGTGTAAAGTCATCAAAGCTAAGTATTACCCTATGGCTACCAACCAACAATGGCCTATGGTTTCAAATGAAGGTTCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAACATTGTAAAACAGAATATTAAAAGAGAATTGGGCAATGGAAATTACATATTGTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGACTTCCTTATATCCAAGACTATACAAACTTTCCACAAGTACTCATGCTTCGGTGGCCAATGTATGGAAAACTGATATTGGAGTTTGGGACATGAATTTCAGGAGAAATCTAAATGAATTCTGA

Coding sequence (CDS)

ATGGGTAGTCTGGCCATTGGTAACATCAAACATAGGAATGTGGCTCTTTTATCAAAATGGATATGGAGATTTGTTTATGGAGATGAAGCTCTCAGGTGTAAAGTCATCAAAGCTAAGTATTACCCTATGGCTACCAACCAACAATGGCCTATGGTTTCAAATGAAGGTTCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAACATTGTAAAACAGAATATTAAAAGAGAATTGGGCAATGGAAATTACATATTGTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGACTTCCTTATATCCAAGACTATACAAACTTTCCACAAGTACTCATGCTTCGGTGGCCAATGTATGGAAAACTGATATTGGAGTTTGGGACATGAATTTCAGGAGAAATCTAAATGAATTCTGA

Protein sequence

MGSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

Homology

[Close]

BLAST of Lag0004004 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-21
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 2   GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKAL 61
           G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ 
Sbjct: 694 GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKG-DIPCVCNHSSSRSP 753

Query: 62  WSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLSTSTHASVANVW 121
           W SI       ++++  ++ NG    FWH  W QN  L+S YPRLY LST+  +S+ ++W
Sbjct: 754 WFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMW 813

Query: 122 KTDIGVWDMNFRRNLNEF 140
              +  WD+N RR L E+
Sbjct: 814 NNTLMDWDLNPRRQLREW 830

[Close]

BLAST of Lag0004004 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-21
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 2   GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKAL 61
           G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ 
Sbjct: 694 GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKG-DIPCVCNHSSSRSP 753

Query: 62  WSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLSTSTHASVANVW 121
           W SI       ++++  ++ NG    FWH  W QN  L+S YPRLY LST+  +S+ ++W
Sbjct: 754 WFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMW 813

Query: 122 KTDIGVWDMNFRRNLNEF 140
              +  WD+N RR L E+
Sbjct: 814 NNTLMDWDLNPRRQLREW 830

[Close]

BLAST of Lag0004004 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-21
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 2   GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKAL 61
           G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ 
Sbjct: 757 GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKG-DIPCVCNHSSSRSP 816

Query: 62  WSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLSTSTHASVANVW 121
           W SI       ++++  ++ NG    FWH  W QN  L+S YPRLY LST+  +S+ ++W
Sbjct: 817 WFSICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQNSPLSSHYPRLYALSTNKESSIRDMW 876

Query: 122 KTDIGVWDMNFRRNLNEF 140
              +  WD+N RR L E+
Sbjct: 877 NNTLMDWDLNPRRQLREW 893

[Close]

BLAST of Lag0004004 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 9.7e-20
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 2   GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKAL 61
           G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ 
Sbjct: 181 GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKG-DIPCVCNHSSSRSP 240

Query: 62  WSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLSTSTHASVANVW 121
           W SI       ++++  ++ NG    FWH  W QN  L+  YPRL+ LST+  +S+ ++W
Sbjct: 241 WFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMW 300

Query: 122 KTDIGVWDMNFRRNLNEF 140
              +  WD+N RR L E+
Sbjct: 301 NNTLMDWDLNPRRQLREW 317

[Close]

BLAST of Lag0004004 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 9.7e-20
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 2   GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKAL 61
           G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ 
Sbjct: 518 GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKG-DIPCVCNHSSSRSP 577

Query: 62  WSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLSTSTHASVANVW 121
           W SI       ++++  ++ NG    FWH  W QN  L+  YPRL+ LST+  +S+ ++W
Sbjct: 578 WFSICKGVEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSLHYPRLFALSTNKDSSIRDMW 637

Query: 122 KTDIGVWDMNFRRNLNEF 140
              +  WD+N RR L E+
Sbjct: 638 NNTLMDWDLNPRRQLREW 654

[Close]

BLAST of Lag0004004 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 31/103 (30.10%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 2   GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYY-PMATNQQWPMVSNEGSSKA 61
           G L +   K  N AL+SK  WR +    +L   V++ KY+     + +W  +  +GS  +
Sbjct: 99  GGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRW--LIPKGSWSS 158

Query: 62  LWSSISM-LNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSL 103
            W SI++ L ++V   +    G+G  I FW D W+    L  L
Sbjct: 159 TWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPLLEL 199

The following BLAST results are available for this feature:

BLAST of Lag0004004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902461.1	5.1e-21	39.13	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
KAA0039770.1	5.1e-21	39.13	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]
TYK06777.1	6.7e-21	39.13	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0040037.1	9.7e-20	37.68	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041367.1	9.7e-20	37.68	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0004004 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	2.0e-04	30.10	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004004.1	Lag0004004.1	mRNA