Lag0003993 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003993
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein kinase superfamily protein
Location	chr6: 243839 .. 244512 (-)
RNA-Seq Expression	Lag0003993
Synteny	Lag0003993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATGTGAATGCAGGATTGAGATTAGTCACAGCTACAGCAAATGTTGCAGAGGTCAAAGCTAGGCCTTCAATGTATAAGTTTTGGGCAAGTGTTACCCTGTATATTTTAACTTCGAGCTCAGACAAATAGTGGGTTTAGAATGCCTTGCCAGAAAAACACTTTTATTATAACTTTTAGTTTAAGCACTTTATTGAGAAGTGTGTTTGAGAGTATTTCTCCATGAGTACTTTAATTATAAGCATTCCTACACACAGTGCTTAAAAGTGTTTAAGAGGTAACATAGAAAAGATAAAGAAAAAAGTGCTTCTGAGGTATTTCTCCATCAAGCATCTGGTCTATAAATGCTCTACAAATGTTTCTTTACAAATGCTTTACAAATGTTTCGTACAATGTAAATACCCCAAGTCTCTAACCTTTTCTCCATTTTAGCTAGACTTGTTACTTTACCTTACAATATATGGCTGATTGTTTATCTTTATTTAACTTTGCTGGTTGCTCTCAACGTCACAAGAAATTGTCTTTACCTGTTTTCTTCATGTAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAATGGTTGCATGGAGCCATGTGCCAACACGACACGCTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTAGCACCGCTCAGGCGTGA

mRNA sequence

ATGATGAATGTGAATGCAGGATTGAGATTAGTCACAGCTACAGCAAATGTTGCAGAGGTCAAAGCTAGGCCTTCAATGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAATGGTTGCATGGAGCCATGTGCCAACACGACACGCTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTAGCACCGCTCAGGCGTGA

Coding sequence (CDS)

ATGATGAATGTGAATGCAGGATTGAGATTAGTCACAGCTACAGCAAATGTTGCAGAGGTCAAAGCTAGGCCTTCAATGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAATGGTTGCATGGAGCCATGTGCCAACACGACACGCTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTAGCACCGCTCAGGCGTGA

Protein sequence

MMNVNAGLRLVTATANVAEVKARPSMMLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA

Homology

[Close]

BLAST of Lag0003993 vs. NCBI nr
Match: XP_004145735.1 (probable receptor-like protein kinase At2g42960 [Cucumis sativus] >KGN46827.1 hypothetical protein Csa_020998 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEYVNNGNLEQWLHGAMCQH TLTWEARMKVLL TA+A
Sbjct: 252 MLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVLLGTAKA 292

[Close]

BLAST of Lag0003993 vs. NCBI nr
Match: GFP78741.1 (probable receptor-like protein kinase at2g42960 [Phtheirospermum japonicum])

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 9   RLVTATANVAEVKARPSMMLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           RLV   A+VA  K   ++MLVYEYVNNGNLEQWLHGAM QH TLTWEARMKVLL TA+A
Sbjct: 197 RLVNG-ADVAVKKLLNNLMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKA 254

[Close]

BLAST of Lag0003993 vs. NCBI nr
Match: XP_022149677.1 (probable receptor-like protein kinase At2g42960 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEYVNNGNLEQWLHGAMCQH TLTWEARMKVLL TA+A
Sbjct: 257 MLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVLLGTAKA 297

[Close]

BLAST of Lag0003993 vs. NCBI nr
Match: XP_038901517.1 (probable receptor-like protein kinase At2g42960 [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEYVNNGNLEQWLHGAMCQH TLTWEARMKVLL TA+A
Sbjct: 257 MLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVLLGTAKA 297

[Close]

BLAST of Lag0003993 vs. NCBI nr
Match: TQD72665.1 (hypothetical protein C1H46_041799 [Malus baccata])

HSP 1 Score: 83.6 bits (205), Expect = 7.2e-13
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEYVNNGNLEQWLHGAMCQH TLTWEARMKV+L TA+A
Sbjct: 260 MLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVILGTAKA 300

[Close]

BLAST of Lag0003993 vs. ExPASy Swiss-Prot
Match: Q9SJG2 (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana OX=3702 GN=At2g42960 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.8e-13
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEYVN+GNLEQWLHGAM QH  LTWEARMK++  TAQA
Sbjct: 253 MLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQA 293

[Close]

BLAST of Lag0003993 vs. ExPASy Swiss-Prot
Match: Q9LRP3 (Probable receptor-like protein kinase At3g17420 OS=Arabidopsis thaliana OX=3702 GN=At3g17420 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-10
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEY+NNGNLEQWLHG M     LTWEAR+KVL+ TA+A
Sbjct: 224 MLVYEYMNNGNLEQWLHGDMIHKGHLTWEARIKVLVGTAKA 264

[Close]

BLAST of Lag0003993 vs. ExPASy Swiss-Prot
Match: Q8LEB6 (Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana OX=3702 GN=At5g18500 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-10
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQA 68
           MLVYEYVNNGNLEQWL G    H+ LTWEAR+K+L+ TA+A
Sbjct: 236 MLVYEYVNNGNLEQWLRGDNQNHEYLTWEARVKILIGTAKA 276

[Close]

BLAST of Lag0003993 vs. ExPASy Swiss-Prot
Match: Q6NKZ9 (Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana OX=3702 GN=At4g34500 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-08
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 22  ARPSMMLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQ 67
           A+   MLVYEY++NGNLEQWLHG +     LTW+ RMK+ + TA+
Sbjct: 212 AQSQRMLVYEYIDNGNLEQWLHGDVGPVSPLTWDIRMKIAIGTAK 256

[Close]

BLAST of Lag0003993 vs. ExPASy Swiss-Prot
Match: Q3EDL4 (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=3702 GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 27  MLVYEYVNNGNLEQWLHGAMCQHDTLTWEARMKVLLSTAQ 67
           MLVY++V+NGNLEQW+HG +     LTW+ RM ++L  A+
Sbjct: 224 MLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAK 263

The following BLAST results are available for this feature:

BLAST of Lag0003993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145735.1	4.2e-13	92.68	probable receptor-like protein kinase At2g42960 [Cucumis sativus] >KGN46827.1 hy...	[more]
GFP78741.1	4.2e-13	74.58	probable receptor-like protein kinase at2g42960 [Phtheirospermum japonicum]	[more]
XP_022149677.1	4.2e-13	92.68	probable receptor-like protein kinase At2g42960 [Momordica charantia]	[more]
XP_038901517.1	4.2e-13	92.68	probable receptor-like protein kinase At2g42960 [Benincasa hispida]	[more]
TQD72665.1	7.2e-13	90.24	hypothetical protein C1H46_041799 [Malus baccata]	[more]

BLAST of Lag0003993 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJG2	5.8e-13	80.49	Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LRP3	1.6e-10	73.17	Probable receptor-like protein kinase At3g17420 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8LEB6	2.7e-10	70.73	Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6NKZ9	2.5e-08	55.56	Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis ...	[more]
Q3EDL4	2.3e-06	52.50	Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=37...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.510.10	Transferase(Phosphotransferase) domain 1	coord: 8..67 e-value: 2.7E-7 score: 31.8
None	No IPR available	PANTHER	PTHR47984	OS01G0323000 PROTEIN	coord: 26..67
None	No IPR available	PANTHER	PTHR47984:SF26	RECEPTOR-LIKE PROTEIN KINASE-RELATED	coord: 26..67
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 25..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003993.1	Lag0003993.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity