Lag0003203 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003203
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L7
Location	chr4: 48963437 .. 48965591 (-)
RNA-Seq Expression	Lag0003203
Synteny	Lag0003203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAACCCCATTATGTCAGTTTTATATTCAAGGATTCTATATTTCAGGTAGTTTATGAAATTATTGTATCATCAATATAATTTGATTTTAGCTGGCTGTATGGAGCAGATTTCAATGGAGTCACAGTGGTGCAAAATTATCTAAATAGGACTGGACGTGAAGAATGGGCTAGAGAGGTTGATACTCTTTATCTTCAGCATGCTCACTACTGTTTATTTTTGTTTGATTGGTTTTTTTAAACTCAATCTATGGCAAGGAGAACTTTACGATATGTTTTCTGAATGTCATCTCTTGTCAAAAAGAAAAATATAAGTAGGGAGTCTGCTTAATCATGTTGCATGACTCTTCAGTCACATTTCTTTTACGTTACTAGAAAATCGTTTTTATGACTGACCACTCAATCTAGAAATTAGAGTGCCTGTCAATGTTTGGATGAGATGAGCGGGTAAAGAGAAAATGGGATTTCAAACTCGCATTTATCTATTTTAATTGTTCTTTACTCTGTAATCATCCATGTCCAGTGGTCTTTTTCTCAAGATGATGTCTGAACTACGTCCATGTTTTACAGTTTCGTCGAGCTGCGAAGGACCGGGACAATTCAGCTTTGCTCAGAATGATGTCGAACTACGGTATGCATTAAATGAGCAATCGACGTTTAAAAAAAAAAATGAGATCTTAGACATGTTTTGTTCACAAATTCTTGTTGCAGGGGAAGAAGTGGTTACTGCTCTAGGAAGCGAAGTGGATAGGCTAGAGAAAGAGATCCAGGAGCTCGTTCCTGGTATTCGGCATGTCGATATCGAGGCTCATAATCCTACTGGGCCATCCCCATGATTCCCAGGGAAGATTTTTTATTATGATTTGTCAAAATTATGGCTTTTGATCAATCCCGAGTGAAGACTTGCTCTTGCCTTGCCAATAGAAATTTTATGTACTACTCAGCGAGTTTCCTCGGGACTGAAGTTAAACTCCCTTCCCAAAACCCGTTGCATAAAACTCTCACTACTTGGAAGCCTGAGGAAACTCGATAATAATTTATATTTTTAGTCTAGGCGGTTGAGATGGTCTCCATTTCGAAGCAAGTTATTTTGAGCCTATTCAAAGTTCATAGTATTTTCGTCTGATTACAAAAATGTTTATTAAATTTTTGACAAACTGTATAAAGAGTTCACAGAAATTCGTGCAATGCTTTATTTTGTTGAAAGTAGTGAGTTTACAGAAATTGAACATACGGTAAAATTTGCAACAATTATCTAAGTCTAGAGTTCACTTAGATGAATTGAAAGTTCAAATTGATTTGTGATTTGAATGTGACCAACTTATTGAATTGAATGGTAAAGTCGTTAAAATTACTTCTTCCCTGCATGTCAAATTGATTTTTTTTTTTTTTTTTTAAAAAAAAACTTGTTTTTGAAATACTATTCTTTTAATTCACTCGCCACAAAATAATAATTATTATTAAACAAAAATAAAAACTTTTGGTGGCGTGACAATTTGGTCAACGAATCCTTCTAAGAAACTCCGCCAAGCAATTTCCAGGAAAGTATGGAATTTCACAAGCAGTTTCCAGGAAAGGTTGGAATTCCCCCAAGCAGTTTCCAGGAAAGTTTGGGGTAAGGCAGGAGAAGCCACAAGGAAGGCTTCTTTTGTTTGAAATTTACAAGTATATATGCAATGTAGTTGAATCCCAATTGGGAAGCAGCTTAGACGATCTTAGAGAAGAAATAAGAAGAAAGGAAAAATGGGGTTGGCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTATCCAATGTTTAGTTTGCACGATTCCATCCCGAAACTGTCTTGTATGCTGACATAGCTCTCTTGTCTCATAAGGCGTTAGGTAAACATGGAATTTTGAGCGTGGAAGATCTTATTCACGAGATCATGACGGTTGGACCTCATTTTAAAGAGGCAAATAACTTCTTGTGGCCATTCAAGCTCAAGGCGCCGTTGGGTGGTTTGAAGAAGAAGAGGAATCACTATGTTGAAGGAGGAGACGCCGGCAATCGTGAAAATTATATCAACGAGCTTATCAGAAGAATGAACTAA

mRNA sequence

ATGCTGAAACCCCATTATGTCAGTTTTATATTCAAGGATTCTATATTTCAGTTTCGTCGAGCTGCGAAGGACCGGGACAATTCAGCTTTGCTCAGAATGATGTCGAACTACGGGGAAGAAGTGGTTACTGCTCTAGGAAGCGAAGTGGATAGGCTAGAGAAAGAGATCCAGGAGCTCGTTCCTGGAAAGTATGGAATTTCACAAGCAGTTTCCAGGAAAGGTTGGAATTCCCCCAAGCAGTTTCCAGGAAAGTTTGGGTTTGCACGATTCCATCCCGAAACTGTCTTGTATGCTGACATAGCTCTCTTGTCTCATAAGGCGTTAGGTAAACATGGAATTTTGAGCGTGGAAGATCTTATTCACGAGATCATGACGGTTGGACCTCATTTTAAAGAGGCAAATAACTTCTTGTGGCCATTCAAGCTCAAGGCGCCGTTGGGTGGTTTGAAGAAGAAGAGGAATCACTATGTTGAAGGAGGAGACGCCGGCAATCGTGAAAATTATATCAACGAGCTTATCAGAAGAATGAACTAA

Coding sequence (CDS)

ATGCTGAAACCCCATTATGTCAGTTTTATATTCAAGGATTCTATATTTCAGTTTCGTCGAGCTGCGAAGGACCGGGACAATTCAGCTTTGCTCAGAATGATGTCGAACTACGGGGAAGAAGTGGTTACTGCTCTAGGAAGCGAAGTGGATAGGCTAGAGAAAGAGATCCAGGAGCTCGTTCCTGGAAAGTATGGAATTTCACAAGCAGTTTCCAGGAAAGGTTGGAATTCCCCCAAGCAGTTTCCAGGAAAGTTTGGGTTTGCACGATTCCATCCCGAAACTGTCTTGTATGCTGACATAGCTCTCTTGTCTCATAAGGCGTTAGGTAAACATGGAATTTTGAGCGTGGAAGATCTTATTCACGAGATCATGACGGTTGGACCTCATTTTAAAGAGGCAAATAACTTCTTGTGGCCATTCAAGCTCAAGGCGCCGTTGGGTGGTTTGAAGAAGAAGAGGAATCACTATGTTGAAGGAGGAGACGCCGGCAATCGTGAAAATTATATCAACGAGCTTATCAGAAGAATGAACTAA

Protein sequence

MLKPHYVSFIFKDSIFQFRRAAKDRDNSALLRMMSNYGEEVVTALGSEVDRLEKEIQELVPGKYGISQAVSRKGWNSPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN

Homology

[Close]

BLAST of Lag0003203 vs. NCBI nr
Match: TYK03983.1 (60S ribosomal protein L7-4 [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-35
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K GF + + +     D +++  +ALGKHGILSVEDLIHEIMTVGPHFKEANNF
Sbjct: 152 SVKELIYKRGFGKLNKQRTALTDNSIV-EQALGKHGILSVEDLIHEIMTVGPHFKEANNF 211

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN
Sbjct: 212 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 251

[Close]

BLAST of Lag0003203 vs. NCBI nr
Match: XP_008462217.1 (PREDICTED: 60S ribosomal protein L7-4 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-35
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K GF + + +     D +++  +ALGKHGILSVEDLIHEIMTVGPHFKEANNF
Sbjct: 144 SVKELIYKRGFGKLNKQRTALTDNSIV-EQALGKHGILSVEDLIHEIMTVGPHFKEANNF 203

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN
Sbjct: 204 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243

[Close]

BLAST of Lag0003203 vs. NCBI nr
Match: KAA0059342.1 (60S ribosomal protein L7-4 [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-35
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K GF + + +     D +++  +ALGKHGILSVEDLIHEIMTVGPHFKEANNF
Sbjct: 144 SVKELIYKRGFGKLNKQRTALTDNSIV-EQALGKHGILSVEDLIHEIMTVGPHFKEANNF 203

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN
Sbjct: 204 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243

[Close]

BLAST of Lag0003203 vs. NCBI nr
Match: XP_011659589.1 (60S ribosomal protein L7-4 [Cucumis sativus] >KGN45421.1 hypothetical protein Csa_016571 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-35
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K GF + + +     D +++  +ALGKHGILSVEDLIHEIMTVGPHFKEANNF
Sbjct: 144 SVKELIYKRGFGKLNKQRTALTDNSIV-EQALGKHGILSVEDLIHEIMTVGPHFKEANNF 203

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN
Sbjct: 204 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243

[Close]

BLAST of Lag0003203 vs. NCBI nr
Match: PPD71888.1 (hypothetical protein GOBAR_DD31206 [Gossypium barbadense])

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-35
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 64  YGISQAVSR--------KGWNSPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILS 123
           YG+ +++S+            S K+   K GF + + + V   D A++  +ALGK+GI+ 
Sbjct: 124 YGLRESISQPFPVCKIYPNLKSVKELIYKRGFGKLNKQRVALTDNAIV-EQALGKYGIIC 183

Query: 124 VEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRR 178
           VEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRR
Sbjct: 184 VEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRR 243

[Close]

BLAST of Lag0003203 vs. ExPASy Swiss-Prot
Match: P60039 (60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-36
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K G+ + + + +   D +++  +ALGKHGI+ VEDLIHEIMTVGPHFKEANNF
Sbjct: 143 SVKELIYKRGYGKLNHQRIALTDNSIVD-QALGKHGIICVEDLIHEIMTVGPHFKEANNF 202

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPF+LKAPLGGLKKKRNHYVEGGDAGNREN+INEL+RRMN
Sbjct: 203 LWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242

[Close]

BLAST of Lag0003203 vs. ExPASy Swiss-Prot
Match: P60040 (60S ribosomal protein L7-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7B PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 70/101 (69.31%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K G+ + + + +   D +++  +ALGKHGI+  EDLIHEI+TVGPHFKEANNF
Sbjct: 143 SVKELIYKRGYGKLNHQRIALTDNSIV-EQALGKHGIICTEDLIHEILTVGPHFKEANNF 202

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPF+LKAPLGGLKKKRNHYVEGGDAGNREN+INELIRRMN
Sbjct: 203 LWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242

[Close]

BLAST of Lag0003203 vs. ExPASy Swiss-Prot
Match: Q9LHP1 (60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 77  SPKQFPGKFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNF 136
           S K+   K GF + + +     D +++  + LGKHGI+ VEDLIHEIMTVGPHFKEANNF
Sbjct: 145 SVKELIYKRGFGKLNHQRTALTDNSIVD-QGLGKHGIICVEDLIHEIMTVGPHFKEANNF 204

Query: 137 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           LWPF+LKAPLGG+KKKRNHYVEGGDAGNREN+INEL+RRMN
Sbjct: 205 LWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244

[Close]

BLAST of Lag0003203 vs. ExPASy Swiss-Prot
Match: Q58DT1 (60S ribosomal protein L7 OS=Bos taurus OX=9913 GN=RPL7 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.5e-28
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 84  KFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNFLWPFKLK 143
           K G+ + + + +   D AL++ ++LGK+GI+ +EDLIHEI TVG  FKEANNFLWPFKL 
Sbjct: 156 KRGYGKINKKRIALTDNALIA-RSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLS 215

Query: 144 APLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           +P GG+KKK  H+VEGGDAGNRE+ IN LIRRMN
Sbjct: 216 SPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248

[Close]

BLAST of Lag0003203 vs. ExPASy Swiss-Prot
Match: P18124 (60S ribosomal protein L7 OS=Homo sapiens OX=9606 GN=RPL7 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.5e-28
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 84  KFGFARFHPETVLYADIALLSHKALGKHGILSVEDLIHEIMTVGPHFKEANNFLWPFKLK 143
           K G+ + + + +   D AL++ ++LGK+GI+ +EDLIHEI TVG  FKEANNFLWPFKL 
Sbjct: 156 KRGYGKINKKRIALTDNALIA-RSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLS 215

Query: 144 APLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 178
           +P GG+KKK  H+VEGGDAGNRE+ IN LIRRMN
Sbjct: 216 SPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248

The following BLAST results are available for this feature:

BLAST of Lag0003203 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03983.1	4.7e-35	76.24	60S ribosomal protein L7-4 [Cucumis melo var. makuwa]	[more]
XP_008462217.1	4.7e-35	76.24	PREDICTED: 60S ribosomal protein L7-4 [Cucumis melo]	[more]
KAA0059342.1	4.7e-35	76.24	60S ribosomal protein L7-4 [Cucumis melo var. makuwa]	[more]
XP_011659589.1	4.7e-35	76.24	60S ribosomal protein L7-4 [Cucumis sativus] >KGN45421.1 hypothetical protein Cs...	[more]
PPD71888.1	6.1e-35	64.75	hypothetical protein GOBAR_DD31206 [Gossypium barbadense]	[more]

BLAST of Lag0003203 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60039	5.7e-36	70.30	60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1	[more]
P60040	2.8e-35	69.31	60S ribosomal protein L7-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7B PE=1 SV=1	[more]
Q9LHP1	2.8e-35	69.31	60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1	[more]
Q58DT1	7.5e-28	61.70	60S ribosomal protein L7 OS=Bos taurus OX=9913 GN=RPL7 PE=2 SV=1	[more]
P18124	7.5e-28	61.70	60S ribosomal protein L7 OS=Homo sapiens OX=9606 GN=RPL7 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 25..177 e-value: 1.8E-9 score: 40.1
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 108..177
IPR039699	Ribosomal protein L7/L30	PANTHER	PTHR11524	60S RIBOSOMAL PROTEIN L7	coord: 84..177
None	No IPR available	PANTHER	PTHR11524:SF47	60S RIBOSOMAL PROTEIN L7-RELATED	coord: 84..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003203.1	Lag0003203.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome