Lag0003196 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003196
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA-binding protein with multiple splicing
Location	chr4: 48876675 .. 48879867 (+)
RNA-Seq Expression	Lag0003196
Synteny	Lag0003196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTACTGGAATTCACCCGTACCACCAGCAATGGCCTGCGGCGGCGGCCGCTCCTCCTCCGCCTCCGCCACAAGCCGCCGCCGCCCCTCCTCCCCCTATTCCACATCCCCATCCTCCTCAGATCCTCGTCGACAATCCCGGCCGCCACGCCTCCGATGAGGTACTCTCTCTTCATCTTTCTTAATTTGTAGTACTCAAGTCGGGATCTTGGGCACTTCGAGATTCAACTGGAGGTTTTACCTAGTTTCGGAGCTTAATTTGATTTTTCTTGTATTTGCTATTGAGTTCGGCTGATAATAGCTGGTAATGCATAGCTAATGCGGATTATTCTGCACAATCAAACGTGTTAAGGAAAAACTCGATTGTTTCTTTCTGCTATTCGATGCTCTCTGAGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTTGTTTGCTTTTAGGTTCGAACTATATTTATAACAGGTCTTCCTGAAGATGTAAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCGCAAGTAAATTTTAAAGGGGAAAAGCCTATGGGATTTGCTCTCTTCTCCAATGCCCAGCTTGCTATTGCTGCCAAAGATGCCCTTCAGGTTCTTGTCTTTACCTCGCTTTTTTGTTTATTGATTTCTTGAATTCTCACTCATGAAGTGTTGGTTGCTTTGATCTCTGTGGTTTAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTTTTTGTTAAACGAGGTGAGCTATGACTTCTATGATTTTTGTTGGGCACATTAAATTTATTTCGAGGTTGGATTGGATGATTTTCATGCTTTTCTGGGTCGTATATAACTATGCAACAGTTTCGTCTGCTCTTCTAACAACGATGGGAGATCAATAAAGATTCTCCCAAACAATGTTTTAAAAGGCTAAAGGCGGCCTCAAGGCTTTTTCTCATGAAGAGGCGAGGCGCAAGCCTTGAGGCGGTGTGAGCCTCAATTTTAATTAAAAACATTATTAAATCCTAAATTTGTGTGAACAAGTAATGCTAAACATAATACCTATATAAAAGTATAGAAAAAGTCACCCCTTGAATTGCTACTTGAACAAATATTCTACAAGTATATCTTTAACATCACTACTATTAATCTAATATCACTTATATGATTGACTTATTCTATAAATTTTTATTTTCAATGTTTTTAAAGCCTAAGTGGTAAAAGTAGTAATATTTCAAATTGTAACAACTCAAACGTTTATATTTTTAAAGAATGAGGAAATTAATACTATTCTTCTAACCATTTTATGAGGTGTAGAGACTTTAAGCCTCAGTGCATTTTTTATAAAGGCGTAAGCCTCTTATGGTCCAAAGAAGGCGTAAGTCTTGAGGCTAAAAGTTAGAGCTTTGCCTTGAGGCGTAAGCCTCAATAGCCTTTTAAAACATTGCTCCCAACATCCTCTTCTGCTTATTCACTAAGGCTTTCTTGTGATGTCCTCTAATAACGCACACATCCATACTTACAGGAGTTACAGATGACCTGTTTTTTATTTTGTTGTGTAATGATTTCAAGCTTTAAATACTTGGTTACTCTTTTTCTTTTTTAAATAAGAAAGAAGCAAAATATTGTTTGATTTTCTAATCTCAGTACTACTTGTAGGCATTGTTGCTGATGCAAGTGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGGGACTATGCCCACACCGGATATTCAAGCCCATCACCTTTTCATGCGCCTCCACCCCCTATTTGGGGACCTCATGGGTAAGTCTTCTCTTTATGGAAACTGGAAAATCCTTTCCGTTTGAAGTCAGTTGTACATTTTCTAATTACCTGAGAGATGTTTTATGGTTGTGGAAAAGGAGTAAGATTCGTAAATAACTCAATTTGCTCACGTTCTTGGACATTTTTGTGGTTGTTTTGTGTGTCCCCCCTCCCACACCAAATGGCATCGAGTTGTCTGGTTCCAAGTTCCTTATGGTTCTGTGATGATCTAGGTATATGGCTCCACCTCCTCCTCCATATGATCCCTATGGAGGTTACCCTGTTCCTCCTGTACCCATGCCTGCTCCTGCACCTGTACCAGCACCCAGCAGCTATGTGCCTGTTCAGGTAATGTTTTTACAGTCTCTATGGCACTTAACTATGATTCTCGTCGGAGTTTTACTTTGTTAGTGTTGTCTCCCTGCGATTTTTTTAATCAGCATTTTCTGTGGTCCACATTGTTTCTTTAGCATGTTGATGCTCTATTTCTCTGTTTGACATTGAACTTTGGCACCACCTTCTTGCAACTACTATCCCTGGAATAGGAGGCTTTATTTACCACTAACTATTAAAGCTGTTACCATGGAGACATCATGAAATGCCCTGTCTTATTGTTTCCACTGGGAAAAGCAAAACTTTTGTTGAATGATTTTTTTTGCAAGGATAAAAAGATTACGGTGTCTCATTTTTCTCCTGTTTCCTACAGAACACAAAAGATAATCCTCCTTGCAATACCCTGTTTATTGGCAATCTGGGGGAAAATGTAAATGAAGAAGAGCTCAGAGGTCTTTTTAGCGTGTATGCTAGTCTCATCTTTGCACAATTTTTCAATCGTTTTATCATCATGTCTACATATCACCCTAAACTAACTGAATCTCTTGGATCTCTGGTTCATGACATATAAATGCAGACAACCTGGATTTAAGCAAATGAAGATTCTGAGGCAGGAAAGGCATACAGTTTGCTTCATTGAGTTTGAAGTAAGTAGGGTTTTAGTTGACTGTTGATCATTTAATCTTCACAAGTAATGTTCAGTTTAAGGACTATTAACCTGTGGTTTCCTTTCATGCTGCTAATTTGGTTATCTGCTTCACCTATGTAGGATGTGAACACTGCCACTAATGTGCATCATAGTTTGCAGGGCGCAGTTATTCCTAGTTCTGGCTCTGTGGGCATGAGAATACAATATCCTTTTCTTTACCAAATTGCTTTCTTTGATGCTAGTTATAGAATGATCATGCCCATCCTAATGGTACTTGTAAATTGGAAGTTGATGTTGCCTGACAAGTGGCAATGCAAGTGTTGGAGTGAATGATTTATCTAATTTAATGGGTGACTTGTGCTACTTACAGCGTACAGGTGATATGCACTGA

mRNA sequence

ATGGCCGGTACTGGAATTCACCCGTACCACCAGCAATGGCCTGCGGCGGCGGCCGCTCCTCCTCCGCCTCCGCCACAAGCCGCCGCCGCCCCTCCTCCCCCTATTCCACATCCCCATCCTCCTCAGATCCTCGTCGACAATCCCGGCCGCCACGCCTCCGATGAGGTTCGAACTATATTTATAACAGGTCTTCCTGAAGATGTAAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCGCAAGTAAATTTTAAAGGGGAAAAGCCTATGGGATTTGCTCTCTTCTCCAATGCCCAGCTTGCTATTGCTGCCAAAGATGCCCTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTTTTTGTTAAACGAGGCATTGTTGCTGATGCAAGTGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGGGACTATGCCCACACCGGATATTCAAGCCCATCACCTTTTCATGCGCCTCCACCCCCTATTTGGGGACCTCATGGGTATATGGCTCCACCTCCTCCTCCATATGATCCCTATGGAGGTTACCCTGTTCCTCCTGTACCCATGCCTGCTCCTGCACCTGTACCAGCACCCAGCAGCTATGTGCCTGTTCAGAACACAAAAGATAATCCTCCTTGCAATACCCTGTTTATTGGCAATCTGGGGGAAAATGTAAATGAAGAAGAGCTCAGAGGTCTTTTTAGCGTACAACCTGGATTTAAGCAAATGAAGATTCTGAGGCAGGAAAGGCATACAGTTTGCTTCATTGAGTTTGAAGATGTGAACACTGCCACTAATGTGCATCATAGTTTGCAGGGCGCAGTTATTCCTAGTTCTGGCTCTGTGGGCATGAGAATACAATATCCTTTTCTTTACCAAATTGCTTTCTTTGATGCTAGTTATAGAATGATCATGCCCATCCTAATGCGTACAGGTGATATGCACTGA

Coding sequence (CDS)

ATGGCCGGTACTGGAATTCACCCGTACCACCAGCAATGGCCTGCGGCGGCGGCCGCTCCTCCTCCGCCTCCGCCACAAGCCGCCGCCGCCCCTCCTCCCCCTATTCCACATCCCCATCCTCCTCAGATCCTCGTCGACAATCCCGGCCGCCACGCCTCCGATGAGGTTCGAACTATATTTATAACAGGTCTTCCTGAAGATGTAAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCGCAAGTAAATTTTAAAGGGGAAAAGCCTATGGGATTTGCTCTCTTCTCCAATGCCCAGCTTGCTATTGCTGCCAAAGATGCCCTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTTTTTGTTAAACGAGGCATTGTTGCTGATGCAAGTGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGGGACTATGCCCACACCGGATATTCAAGCCCATCACCTTTTCATGCGCCTCCACCCCCTATTTGGGGACCTCATGGGTATATGGCTCCACCTCCTCCTCCATATGATCCCTATGGAGGTTACCCTGTTCCTCCTGTACCCATGCCTGCTCCTGCACCTGTACCAGCACCCAGCAGCTATGTGCCTGTTCAGAACACAAAAGATAATCCTCCTTGCAATACCCTGTTTATTGGCAATCTGGGGGAAAATGTAAATGAAGAAGAGCTCAGAGGTCTTTTTAGCGTACAACCTGGATTTAAGCAAATGAAGATTCTGAGGCAGGAAAGGCATACAGTTTGCTTCATTGAGTTTGAAGATGTGAACACTGCCACTAATGTGCATCATAGTTTGCAGGGCGCAGTTATTCCTAGTTCTGGCTCTGTGGGCATGAGAATACAATATCCTTTTCTTTACCAAATTGCTTTCTTTGATGCTAGTTATAGAATGATCATGCCCATCCTAATGCGTACAGGTGATATGCACTGA

Protein sequence

MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIWGPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVGMRIQYPFLYQIAFFDASYRMIMPILMRTGDMH

Homology

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BLAST of Lag0003196 vs. NCBI nr
Match: TYK03977.1 (RNA-binding protein with multiple splicing [Cucumis melo var. makuwa])

HSP 1 Score: 626.3 bits (1614), Expect = 1.5e-175
Identity = 315/326 (96.63%), Postives = 318/326 (97.55%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQAAAA PPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ AIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVN ATNVHHSLQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFFDASYRMIMPILM 327
           MRIQYPFLYQI F+  S R I+PIL+
Sbjct: 301 MRIQYPFLYQIVFYYVSRRTILPILL 326

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BLAST of Lag0003196 vs. NCBI nr
Match: KAA0059349.1 (RNA-binding protein with multiple splicing [Cucumis melo var. makuwa])

HSP 1 Score: 615.9 bits (1587), Expect = 2.0e-172
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQAAAA PPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ AIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVN ATNVHHSLQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFF----DASYRMIMP 324
           MRIQYPFLYQI  F    DA+Y +  P
Sbjct: 301 MRIQYPFLYQINPFGKRKDAAYPVSAP 327

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BLAST of Lag0003196 vs. NCBI nr
Match: KAE8646484.1 (hypothetical protein Csa_016702 [Cucumis sativus])

HSP 1 Score: 614.8 bits (1584), Expect = 4.5e-172
Identity = 308/314 (98.09%), Postives = 308/314 (98.09%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQAAAA PPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ AIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADAS YDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASVYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVN ATNVHHSLQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFF 315
           MRIQYPF YQI FF
Sbjct: 301 MRIQYPFFYQIVFF 314

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BLAST of Lag0003196 vs. NCBI nr
Match: XP_022953445.1 (RNA-binding protein with multiple splicing 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 612.1 bits (1577), Expect = 2.9e-171
Identity = 309/326 (94.79%), Postives = 314/326 (96.32%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPP PPPQAA A PPPIPHPHPPQILVDNP RHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPLPPPQAATAAPPPIPHPHPPQILVDNPSRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSN QLAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNGQLAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADA+AYDQSKRLRTGGDYAHT YSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYAHTRYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVP+PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPIPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGL SVQ GFKQMKILRQERHTVCFIEFEDVNTATNVHH+LQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLLSVQSGFKQMKILRQERHTVCFIEFEDVNTATNVHHNLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFFDASYRMIMPILM 327
           MRIQYPFLYQ   FDASYR I+PIL+
Sbjct: 301 MRIQYPFLYQNFLFDASYRTILPILL 326

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BLAST of Lag0003196 vs. NCBI nr
Match: XP_023547595.1 (RNA-binding protein with multiple splicing 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 610.1 bits (1572), Expect = 1.1e-170
Identity = 308/326 (94.48%), Postives = 314/326 (96.32%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPP PPPQAA A PPPIPHPHPPQILVDNP RHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPLPPPQAATAAPPPIPHPHPPQILVDNPSRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSN QLAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNGQLAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADA+AYDQSKRLRTGGDYAHT YSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYAHTRYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVP+PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPIPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGL SVQ GFKQMKILRQERHTVCFIEFEDVNTATNVHH+LQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLLSVQSGFKQMKILRQERHTVCFIEFEDVNTATNVHHNLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFFDASYRMIMPILM 327
           MRIQYPFL+Q   FDASYR I+PIL+
Sbjct: 301 MRIQYPFLHQNFLFDASYRTILPILL 326

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BLAST of Lag0003196 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-12
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 49  GRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAI 108
           G    +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A 
Sbjct: 17  GSPLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAE 76

Query: 109 AAKDALQDMVFDAESKSVLHTEMAKKN 136
           AAK+AL  + FD E+   L  E AK N
Sbjct: 77  AAKNALNGIRFDPENPQTLRLEFAKAN 103

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BLAST of Lag0003196 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-12
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 49  GRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAI 108
           G    +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A 
Sbjct: 23  GGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAE 82

Query: 109 AAKDALQDMVFDAESKSVLHTEMAKKN 136
           AAK+AL  + FD E+   L  E AK N
Sbjct: 83  AAKNALNGIRFDPENPQTLRLEFAKAN 109

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BLAST of Lag0003196 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 51/163 (31.29%), Postives = 73/163 (44.79%), Query Frame = 0


Query: 46  DNPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ 105
           ++   +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F N  
Sbjct: 9   EHNNNNIEEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRA 68

Query: 106 LAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADASAYDQSKRLRTGGDYAHT 165
            A AAK+AL  + FD E+   L  E AK N    K  ++A  +  +    L      AH 
Sbjct: 69  GAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNFHPALG-----AHF 128

Query: 166 GYSSPSPFHA-----PPPPIWGPHGYMAPPPPPYDPYGGYPVP 203
               P  F         P  W P+        P  P+  +  P
Sbjct: 129 IARDPYDFTGAALIPASPEAWAPYPLYTAELAPAIPHAAFTYP 166

[Close]

BLAST of Lag0003196 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-07
Identity = 57/182 (31.32%), Postives = 81/182 (44.51%), Query Frame = 0


Query: 47  NPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQL 106
           N G +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   
Sbjct: 12  NGGGNVEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAG 71

Query: 107 AIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADASAYDQSKRLRTGGDY-AHT 166
           A AAK+AL  + FD E+   L  E AK N    K  ++A  +  +    L  G  + A  
Sbjct: 72  AEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPTNIHPAL--GAHFIARD 131

Query: 167 GYSSPSPFHAP-PPPIWGPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQN 226
            Y        P  P  W P+        P  P+  +  P     A A       Y P + 
Sbjct: 132 PYDLTGAALIPASPEAWAPYPLYTTELTPAIPHAAFTYPAAAAAAAALHAQMRWYPPSEA 191

[Close]

BLAST of Lag0003196 vs. ExPASy Swiss-Prot
Match: Q93062 (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-07
Identity = 51/168 (30.36%), Postives = 73/168 (43.45%), Query Frame = 0


Query: 54  DEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDA 113
           +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+A
Sbjct: 21  EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNA 80

Query: 114 LQDMVFDAESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSP-F 173
           L  + FD E    L  E AK N  + +  +                  A   Y    P  
Sbjct: 81  LNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL 140

Query: 174 HAPPPPIWGPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVP 221
           +   P +W P+       P Y       +PP     PA + A   ++P
Sbjct: 141 YPSSPEVWAPY-------PLYPAELAPALPPPAFTYPASLHAQMRWLP 181

[Close]

BLAST of Lag0003196 vs. ExPASy TrEMBL
Match: A0A5D3BWV1 (RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001750 PE=4 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 7.2e-176
Identity = 315/326 (96.63%), Postives = 318/326 (97.55%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQAAAA PPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ AIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVN ATNVHHSLQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFFDASYRMIMPILM 327
           MRIQYPFLYQI F+  S R I+PIL+
Sbjct: 301 MRIQYPFLYQIVFYYVSRRTILPILL 326

[Close]

BLAST of Lag0003196 vs. ExPASy TrEMBL
Match: A0A5A7V0M8 (RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00740 PE=4 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 9.7e-173
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQAAAA PPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ AIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVN ATNVHHSLQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFF----DASYRMIMP 324
           MRIQYPFLYQI  F    DA+Y +  P
Sbjct: 301 MRIQYPFLYQINPFGKRKDAAYPVSAP 327

[Close]

BLAST of Lag0003196 vs. ExPASy TrEMBL
Match: A0A6J1GPN3 (RNA-binding protein with multiple splicing 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455998 PE=4 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 1.4e-171
Identity = 309/326 (94.79%), Postives = 314/326 (96.32%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPP PPPQAA A PPPIPHPHPPQILVDNP RHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPLPPPQAATAAPPPIPHPHPPQILVDNPSRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSN QLAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNGQLAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADA+AYDQSKRLRTGGDYAHT YSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYAHTRYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVP+PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPIPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGL SVQ GFKQMKILRQERHTVCFIEFEDVNTATNVHH+LQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLLSVQSGFKQMKILRQERHTVCFIEFEDVNTATNVHHNLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFFDASYRMIMPILM 327
           MRIQYPFLYQ   FDASYR I+PIL+
Sbjct: 301 MRIQYPFLYQNFLFDASYRTILPILL 326

[Close]

BLAST of Lag0003196 vs. ExPASy TrEMBL
Match: A0A6J1JT78 (U1 small nuclear ribonucleoprotein A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488662 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.3e-169
Identity = 306/326 (93.87%), Postives = 312/326 (95.71%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPP PPPQAA A PPPIPHPHPPQILVDNP RHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPLPPPQAATAAPPPIPHPHPPQILVDNPSRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSN QLAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNGQLAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           A+SKSVLHTEMAKKNLFVKRGIVADA+AYDQSKRLRTGGDYAHT YSSPSPFHAPPPPIW
Sbjct: 121 ADSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYAHTRYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVP+PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPIPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGL S Q GFKQMKILRQERHTVCFIEFEDVNTATNVHH+LQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLLSGQSGFKQMKILRQERHTVCFIEFEDVNTATNVHHNLQGAVIPSSGSVG 300

Query: 301 MRIQYPFLYQIAFFDASYRMIMPILM 327
           MRIQYPFLY    FDASYR I+PIL+
Sbjct: 301 MRIQYPFLYLNFLFDASYRTILPILL 326

[Close]

BLAST of Lag0003196 vs. ExPASy TrEMBL
Match: A0A1S3CH02 (RNA-binding protein with multiple splicing OS=Cucumis melo OX=3656 GN=LOC103500634 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.5e-168
Identity = 301/305 (98.69%), Postives = 302/305 (99.02%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQAAAA PPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ AIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVN ATNVHHSLQGAVIPSSGSVG
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 MRIQY 306
           MRIQ+
Sbjct: 301 MRIQF 305

[Close]

BLAST of Lag0003196 vs. TAIR 10
Match: AT3G21215.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-135
Identity = 250/309 (80.91%), Postives = 266/309 (86.08%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAPPPPIP---HPHPPQILVDNPGRHASDEVR 60
           MAG GIHPYHQQWP  A APPPP   ++AAPP P P   HP PP +LVDN  R   DE+R
Sbjct: 1   MAGAGIHPYHQQWP-PAGAPPPPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDELR 60

Query: 61  TIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDM 120
           TIFI GLP+DVKEREL NLLRWLPGYEASQVNFKGEKPMGFALFS AQ A+AAKD LQ M
Sbjct: 61  TIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGEKPMGFALFSTAQFAMAAKDTLQHM 120

Query: 121 VFDAESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPP 180
           VFDAESKSV+HTEMAKKNLFVKRGIV D++AYDQSKRLRTGGD  H+ Y SPSPFH PPP
Sbjct: 121 VFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTHSVY-SPSPFHPPPP 180

Query: 181 PIWG-PHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIG 240
           P+WG PHGYMAP PPPYDPY GY  PPVPMP P P+ APSSYVPVQN KDNPPCNTLFIG
Sbjct: 181 PVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVPVQNIKDNPPCNTLFIG 240

Query: 241 NLGENVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSS 300
           NLGEN+NEEELR L S QPGFKQMKILRQERHTVCFIEFEDVN+ATNVHH+LQGAVIPSS
Sbjct: 241 NLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSS 300

Query: 301 GSVGMRIQY 306
           GS+GMRIQY
Sbjct: 301 GSIGMRIQY 307

[Close]

BLAST of Lag0003196 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-30
Identity = 116/311 (37.30%), Postives = 155/311 (49.84%), Query Frame = 0


Query: 6   IHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLP 65
           +  Y+  +   A  PPPPP       P PI   H    L  +    A DEVRT+F+ GLP
Sbjct: 4   LEAYYSHYNLPAMVPPPPP----GVSPIPITSAH-SVYLPTHVSIGARDEVRTLFVAGLP 63

Query: 66  EDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESK 125
           EDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q A+A   AL  MVFD E  
Sbjct: 64  EDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKH 123

Query: 126 SVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIWGPHG 185
           S LH ++AK N   KR    D   ++  K+L++      +G+ S   F  P         
Sbjct: 124 STLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGFGS---FQTP--------- 183

Query: 186 YMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENVNE 245
                   Y+  G  P     + A     AP+S  P   +K   PC TLFI N+G N  E
Sbjct: 184 --GMSSSAYNTIGYSPAQSQGI-ANVAGRAPTSRKP---SKAADPCPTLFIANMGPNCTE 243

Query: 246 EELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSS--GSVGMR 305
            EL  +FS   GF ++KI       V F++F+DV+ ++   H+LQG V+ SS  G V +R
Sbjct: 244 AELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEV-LR 288

Query: 306 IQYPFLYQIAF 314
           +QYP L  I F
Sbjct: 304 LQYPSLLPILF 288

[Close]

BLAST of Lag0003196 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-28
Identity = 112/303 (36.96%), Postives = 151/303 (49.83%), Query Frame = 0


Query: 6   IHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLP 65
           +  Y+  +   A  PPPPP       P PI   H    L  +    A DEVRT+F+ GLP
Sbjct: 4   LEAYYSHYNLPAMVPPPPP----GVSPIPITSAH-SVYLPTHVSIGARDEVRTLFVAGLP 63

Query: 66  EDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESK 125
           EDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q A+A   AL  MVFD E  
Sbjct: 64  EDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKH 123

Query: 126 SVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIWGPHG 185
           S LH ++AK N   KR    D   ++  K+L++      +G+ S   F  P         
Sbjct: 124 STLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGFGS---FQTP--------- 183

Query: 186 YMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENVNE 245
                   Y+  G  P     + A     AP+S  P   +K   PC TLFI N+G N  E
Sbjct: 184 --GMSSSAYNTIGYSPAQSQGI-ANVAGRAPTSRKP---SKAADPCPTLFIANMGPNCTE 243

Query: 246 EELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSS--GSVGMR 305
            EL  +FS   GF ++KI       V F++F+DV+ ++   H+LQG V+ SS  G V +R
Sbjct: 244 AELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEV-LR 280

[Close]

BLAST of Lag0003196 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.1 bits (305), Expect = 8.5e-28
Identity = 107/292 (36.64%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 6   IHPYHQQWPAAAAAPPPPPPQAAAAPPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLP 65
           +  Y+  +   A  PPPPP       P PI   H    L  +    A DEVRT+F+ GLP
Sbjct: 4   LEAYYSHYNLPAMVPPPPP----GVSPIPITSAH-SVYLPTHVSIGARDEVRTLFVAGLP 63

Query: 66  EDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESK 125
           EDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q A+A   AL  MVFD E  
Sbjct: 64  EDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKH 123

Query: 126 SVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIWGPHG 185
           S LH ++AK N   KR    D   ++  K+L++      +G+ S   F  P         
Sbjct: 124 STLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGFGS---FQTP--------- 183

Query: 186 YMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENVNE 245
                   Y+  G  P     + A     AP+S  P   +K   PC TLFI N+G N  E
Sbjct: 184 --GMSSSAYNTIGYSPAQSQGI-ANVAGRAPTSRKP---SKAADPCPTLFIANMGPNCTE 243

Query: 246 EELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSS 297
            EL  +FS   GF ++KI       V F++F+DV+ ++   H+LQG V+ SS
Sbjct: 244 AELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSS 270

[Close]

BLAST of Lag0003196 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-21
Identity = 90/284 (31.69%), Postives = 137/284 (48.24%), Query Frame = 0


Query: 36  PHPHPPQ--ILVDNPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNF--K 95
           PH  PPQ  +L D PG      + T+F++GLP DVK RE+ NL R   G+E+ Q+ +  +
Sbjct: 19  PHHLPPQLPLLADEPG-----AINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGR 78

Query: 96  GEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRG------IVAD 155
           G++ + FA F++ + A+AA + L  + FD ++ S LH E+A+ N   K        +V D
Sbjct: 79  GDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVID 138

Query: 156 ASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIWGPHGYMAPPPPPYDPYGGYPVPPVP 215
               + SK   +  D +  G S P     P           +  P   D           
Sbjct: 139 NRNKEISK---SQDDQSDEGDSDPDEVQEPG---------NSDSPKEND------TTKSE 198

Query: 216 MPAPAPVPAPSSYVPVQNTKDN----PPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMK 275
             +     APS+   ++   +       C+TLFI NLG N  E+EL+ L S  PGF  +K
Sbjct: 199 ADSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILK 258

Query: 276 ILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVGMRIQY 306
           I  +    V F +FE++  AT+  + LQG ++ SS   GM I+Y
Sbjct: 259 IRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEY 279

The following BLAST results are available for this feature:

BLAST of Lag0003196 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03977.1	1.5e-175	96.63	RNA-binding protein with multiple splicing [Cucumis melo var. makuwa]	[more]
KAA0059349.1	2.0e-172	95.72	RNA-binding protein with multiple splicing [Cucumis melo var. makuwa]	[more]
KAE8646484.1	4.5e-172	98.09	hypothetical protein Csa_016702 [Cucumis sativus]	[more]
XP_022953445.1	2.9e-171	94.79	RNA-binding protein with multiple splicing 2 isoform X1 [Cucurbita moschata]	[more]
XP_023547595.1	1.1e-170	94.48	RNA-binding protein with multiple splicing 2-like isoform X1 [Cucurbita pepo sub...	[more]

BLAST of Lag0003196 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VC52	1.3e-12	43.68	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
Q6ZRY4	1.7e-12	43.68	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q9YGP5	1.9e-08	31.29	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q9W6I1	3.6e-07	31.32	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q93062	6.2e-07	30.36	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1...	[more]

BLAST of Lag0003196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWV1	7.2e-176	96.63	RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7V0M8	9.7e-173	95.72	RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1GPN3	1.4e-171	94.79	RNA-binding protein with multiple splicing 2 isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1JT78	1.3e-169	93.87	U1 small nuclear ribonucleoprotein A-like isoform X1 OS=Cucurbita maxima OX=3661...	[more]
A0A1S3CH02	5.5e-168	98.69	RNA-binding protein with multiple splicing OS=Cucumis melo OX=3656 GN=LOC1035006...	[more]

BLAST of Lag0003196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21215.1	1.2e-135	80.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	4.1e-30	37.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	1.7e-28	36.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	8.5e-28	36.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	2.6e-21	31.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 58..128 e-value: 0.021 score: 21.6 coord: 232..304 e-value: 1.4E-7 score: 41.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 233..294 e-value: 9.9E-10 score: 38.1 coord: 59..120 e-value: 5.4E-5 score: 23.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 231..310 score: 10.888906
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 57..134 score: 8.552317
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 218..306 e-value: 1.1E-19 score: 72.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..138 e-value: 4.9E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 1..307
None	No IPR available	PANTHER	PTHR10501:SF49	CELL WALL INTEGRITY PROTEIN SCW1	coord: 1..307
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 229..306 e-value: 2.1194E-44 score: 145.04
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 57..130 e-value: 1.30519E-35 score: 121.993
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003196.1	Lag0003196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding