Lag0003182 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003182
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	FLZ-type domain-containing protein
Location	chr4: 48762051 .. 48762732 (-)
RNA-Seq Expression	Lag0003182
Synteny	Lag0003182

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCTAAATTGGGGAGTCCCTTCAAGATGAAGGAGAGAAATAATGGTAAGCTGAGAGAGAATGAAAATTCCAGAAATTTGAAGGCTGTTGGGTTGGGAATCCTTGTAGATCATCGATCACCAGAGCCAAATCTAGTGGTTAAACAATCCAGAAAACTTGCTCCTTCACTAATTGGTTCCACTCCAACCAATTCTAATGACAACCCATGTTTTCTCAAAACATGTTTCCTATGCCACAAGAATCTCGACCCCCAGGAAGATATTTACATGTACAGGTACTTTAAACTTTTTCTTAATCAGCAGGATTCTCTAAAGCTAAACTTTTTCTTGCAATTCATCATGGAATTTGGAGAAGAATTTACCTTTATTTTGTTCTTCCTTTGAGCTGTTTCATTGAAGAGCATTCGAACTGAAGTGCTTTTTCCAATTCTAGTTCAGTTTGTTGATGGTATTTGGTCCTGTTAACAGGGGAGATCAAGGTTATTGCAGTATAAAGTGTCGAAACCAACAGATTGAAACTGATGAAAAGAAAGAATTAGAAGCTTCCACCAGGAAAATACTGGCATCTTTCAGGCAATGTCATAAAAATGAACCGAGTGAAACTCGCCTCCTCTTAGAGGATCTCCGGCGGCAACATAGCCGGCTTCCCCATGCGAGAATTCGACCCGTTGTTTCATAG

mRNA sequence

ATGCTTCCTAAATTGGGGAGTCCCTTCAAGATGAAGGAGAGAAATAATGGTAAGCTGAGAGAGAATGAAAATTCCAGAAATTTGAAGGCTGTTGGGTTGGGAATCCTTGTAGATCATCGATCACCAGAGCCAAATCTAGTGGTTAAACAATCCAGAAAACTTGCTCCTTCACTAATTGGTTCCACTCCAACCAATTCTAATGACAACCCATGTTTTCTCAAAACATGTTTCCTATGCCACAAGAATCTCGACCCCCAGGAAGATATTTACATGTACAGGGGAGATCAAGGTTATTGCAGTATAAAGTGTCGAAACCAACAGATTGAAACTGATGAAAAGAAAGAATTAGAAGCTTCCACCAGGAAAATACTGGCATCTTTCAGGCAATGTCATAAAAATGAACCGAGTGAAACTCGCCTCCTCTTAGAGGATCTCCGGCGGCAACATAGCCGGCTTCCCCATGCGAGAATTCGACCCGTTGTTTCATAG

Coding sequence (CDS)

ATGCTTCCTAAATTGGGGAGTCCCTTCAAGATGAAGGAGAGAAATAATGGTAAGCTGAGAGAGAATGAAAATTCCAGAAATTTGAAGGCTGTTGGGTTGGGAATCCTTGTAGATCATCGATCACCAGAGCCAAATCTAGTGGTTAAACAATCCAGAAAACTTGCTCCTTCACTAATTGGTTCCACTCCAACCAATTCTAATGACAACCCATGTTTTCTCAAAACATGTTTCCTATGCCACAAGAATCTCGACCCCCAGGAAGATATTTACATGTACAGGGGAGATCAAGGTTATTGCAGTATAAAGTGTCGAAACCAACAGATTGAAACTGATGAAAAGAAAGAATTAGAAGCTTCCACCAGGAAAATACTGGCATCTTTCAGGCAATGTCATAAAAATGAACCGAGTGAAACTCGCCTCCTCTTAGAGGATCTCCGGCGGCAACATAGCCGGCTTCCCCATGCGAGAATTCGACCCGTTGTTTCATAG

Protein sequence

MLPKLGSPFKMKERNNGKLRENENSRNLKAVGLGILVDHRSPEPNLVVKQSRKLAPSLIGSTPTNSNDNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEASTRKILASFRQCHKNEPSETRLLLEDLRRQHSRLPHARIRPVVS

Homology

[Close]

BLAST of Lag0003182 vs. NCBI nr
Match: XP_038896964.1 (FCS-Like Zinc finger 17-like isoform X1 [Benincasa hispida])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 124/164 (75.61%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 1   MLPKLGSPFKMKERNNGKLRENENSRN-LKAVGLGILVDHRSPEPNLVVKQSRKLAPSLI 60
           MLPKL SPF+MK R       N+NSR+ LK VGLGILV HRSPEPNLVVKQSRK +PSL+
Sbjct: 1   MLPKLSSPFRMKNR-------NDNSRSYLKGVGLGILV-HRSPEPNLVVKQSRKFSPSLV 60

Query: 61  GSTPTNSNDNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEAS 120
            S    SN+NP FLKTC LCHKNLDPQEDIYMYRGDQGYCSIKCRNQQI+ DEK+ELEAS
Sbjct: 61  SS----SNNNPSFLKTCSLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIDIDEKRELEAS 120

Query: 121 TRKILASFRQCHKNEP-SETRLLLEDLRRQHSRLPHARIRPVVS 163
           TRK++AS+RQC KNE  +ETR LLEDLR+QH+RLPH RIRPVVS
Sbjct: 121 TRKMVASYRQCLKNEQRTETRFLLEDLRQQHNRLPHPRIRPVVS 152

[Close]

BLAST of Lag0003182 vs. NCBI nr
Match: XP_008462244.1 (PREDICTED: uncharacterized protein LOC103500647 [Cucumis melo] >KAA0059360.1 DUF581 family protein [Cucumis melo var. makuwa] >TYK03966.1 DUF581 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-56
Identity = 123/163 (75.46%), Postives = 139/163 (85.28%), Query Frame = 0


Query: 1   MLPKLGSPFKMKERNNGKLRENENSRNLKAVGLGILVDHRSPEPNLVVKQSRKLAPSLIG 60
           MLPKL SPFK KERN      + +S  LK VGLGILV HRSPEPNLVVKQSRKL+PSL+ 
Sbjct: 1   MLPKLSSPFKRKERN------DNSSSYLKGVGLGILV-HRSPEPNLVVKQSRKLSPSLVS 60

Query: 61  STPTNSNDNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEAST 120
           S    SN+NP FLKTC LC+KNLDPQEDIYMYRGDQGYCSIKCRNQQI+ D+K+ELEAST
Sbjct: 61  S----SNNNPSFLKTCSLCNKNLDPQEDIYMYRGDQGYCSIKCRNQQIDIDDKRELEAST 120

Query: 121 RKILASFRQCHKNEP-SETRLLLEDLRRQHSRLPHARIRPVVS 163
           RK++A++RQC KNEP +ETRLLLEDL RQH+RLPH+RIRPVVS
Sbjct: 121 RKMVAAYRQCLKNEPRTETRLLLEDL-RQHNRLPHSRIRPVVS 151

[Close]

BLAST of Lag0003182 vs. NCBI nr
Match: XP_004141729.1 (FCS-Like Zinc finger 17 [Cucumis sativus] >KGN45444.1 hypothetical protein Csa_016251 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-56
Identity = 121/163 (74.23%), Postives = 140/163 (85.89%), Query Frame = 0


Query: 1   MLPKLGSPFKMKERNNGKLRENENSRNLKAVGLGILVDHRSPEPNLVVKQSRKLAPSLIG 60
           MLPKL SPFK KER     ++N +S  LK +GLGILV HRSPEPNLVVKQSRKL+PSL+ 
Sbjct: 1   MLPKLSSPFKRKER-----KDNYSSSYLKGIGLGILV-HRSPEPNLVVKQSRKLSPSLVS 60

Query: 61  STPTNSNDNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEAST 120
           S    SN+NP FLKTC LC+KNLDPQEDIYMYRGDQGYCSIKCRNQQI+ D+K+ELEAST
Sbjct: 61  S----SNNNPSFLKTCSLCNKNLDPQEDIYMYRGDQGYCSIKCRNQQIDIDDKRELEAST 120

Query: 121 RKILASFRQCHKNEP-SETRLLLEDLRRQHSRLPHARIRPVVS 163
           RK++A++R+C KNEP +ETRLLLEDL RQH+RLPH+RIRPVVS
Sbjct: 121 RKMVAAYRKCLKNEPRTETRLLLEDL-RQHNRLPHSRIRPVVS 152

[Close]

BLAST of Lag0003182 vs. NCBI nr
Match: XP_022964037.1 (uncharacterized protein LOC111464182 [Cucurbita moschata] >XP_023515161.1 uncharacterized protein LOC111779275 [Cucurbita pepo subsp. pepo] >KAG6593580.1 FCS-Like Zinc finger 18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025925.1 Protein MARD1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 119/154 (77.27%), Postives = 129/154 (83.77%), Query Frame = 0


Query: 1   MLPKLGSPFKMKERNNGKLRENENS-RNLKAVGLGILVDHRSPEPNLVVKQSRKLAPSLI 60
           MLPKLG PF+MKER NGKLRE +N+ RN KAVGLGILV HRSP+PNL++K S KLA    
Sbjct: 1   MLPKLGRPFRMKER-NGKLRETDNNPRNSKAVGLGILV-HRSPQPNLLLKHSTKLA---- 60

Query: 61  GSTPTNSNDNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEAS 120
            ST   SN N CFLKTC LCHKNLDP EDIYMYRGDQGYCSIKCRNQQIE DE++ELE S
Sbjct: 61  SSTQIISN-NSCFLKTCLLCHKNLDPHEDIYMYRGDQGYCSIKCRNQQIENDERRELEDS 120

Query: 121 TRKILASFRQCHKNEPSETRLLLEDLRRQHSRLP 154
           TRKIL SFRQCHKNEP ET LLLEDL+RQH+RLP
Sbjct: 121 TRKILESFRQCHKNEPIETHLLLEDLQRQHNRLP 147

[Close]

BLAST of Lag0003182 vs. NCBI nr
Match: XP_038896965.1 (FCS-Like Zinc finger 17-like isoform X2 [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0


Query: 1   MLPKLGSPFKMKERNNGKLRENENSRN-LKAVGLGILVDHRSPEPNLVVKQSRKLAPSLI 60
           MLPKL SPF+MK R       N+NSR+ LK VGLGILV HRSPEPNLVVKQSRK +PSL+
Sbjct: 1   MLPKLSSPFRMKNR-------NDNSRSYLKGVGLGILV-HRSPEPNLVVKQSRKFSPSLV 60

Query: 61  GSTPTNSNDNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEAS 120
            S    SN+NP FLKTC LCHKNLDPQEDIYM  GDQGYCSIKCRNQQI+ DEK+ELEAS
Sbjct: 61  SS----SNNNPSFLKTCSLCHKNLDPQEDIYM--GDQGYCSIKCRNQQIDIDEKRELEAS 120

Query: 121 TRKILASFRQCHKNEP-SETRLLLEDLRRQHSRLPHARIRPVVS 163
           TRK++AS+RQC KNE  +ETR LLEDLR+QH+RLPH RIRPVVS
Sbjct: 121 TRKMVASYRQCLKNEQRTETRFLLEDLRQQHNRLPHPRIRPVVS 150

[Close]

BLAST of Lag0003182 vs. ExPASy Swiss-Prot
Match: P0DO11 (FCS-Like Zinc finger 17 OS=Arabidopsis thaliana OX=3702 GN=FLZ17 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 30  AVGLGILV-DHRSPEPNLVVKQSRKLAPSLIGSTPTNSN-DNPCFLKTCFLCHKNLDPQE 89
           +VGL ++  D R    N+V+K S +L  S       N N    CFLKTC LC+K L   +
Sbjct: 5   SVGLQLVTRDSREKLNNIVIKSSLRLNRS-------NPNISELCFLKTCHLCNKQLHQDK 64

Query: 90  DIYMYRGDQGYCSIKCRNQQIETDEKKELEASTRKILASFRQCHKNE-PSETRLLLEDLR 149
           D+YMYRGD G+CS +CR  Q+  D++KELEAST+ +LAS+R+C+     SE+R L +DLR
Sbjct: 65  DVYMYRGDLGFCSRECRESQMLIDDRKELEASTKMMLASYRRCNNGAGKSESRNLFDDLR 119

[Close]

BLAST of Lag0003182 vs. ExPASy Swiss-Prot
Match: P0DO12 (FCS-Like Zinc finger 18 OS=Arabidopsis thaliana OX=3702 GN=FLZ18 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 30  AVGLGILV-DHRSPEPNLVVKQSRKLAPSLIGSTPTNSN-DNPCFLKTCFLCHKNLDPQE 89
           +VGL ++  D R    N+V+K S +L  S       N N    CFLKTC LC+K L   +
Sbjct: 5   SVGLQLVTRDSREKLNNIVIKSSLRLNRS-------NPNISELCFLKTCHLCNKQLHQDK 64

Query: 90  DIYMYRGDQGYCSIKCRNQQIETDEKKELEASTRKILASFRQCHKNE-PSETRLLLEDLR 149
           D+YMYRGD G+CS +CR  Q+  D++KELEAST+ +LAS+R+C+     SE+R L +DLR
Sbjct: 65  DVYMYRGDLGFCSRECRESQMLIDDRKELEASTKMMLASYRRCNNGAGKSESRNLFDDLR 119

[Close]

BLAST of Lag0003182 vs. ExPASy Swiss-Prot
Match: Q9FH22 (FCS-Like Zinc finger 15 OS=Arabidopsis thaliana OX=3702 GN=FLZ15 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 10  KMKERNNGKLRENENSRNLKAVGLGILVDHRSPEPNLVVKQSRKLAPSLIGSTPTNSN-- 69
           +M   NN     N N+ N   +  G+L+   SP+   VV ++  +  + + +  TN    
Sbjct: 9   EMTNNNNNNNNNNNNNNNKNPLSEGVLI---SPK---VVNKANIIVTTAVTTDTTNLRRC 68

Query: 70  -DNPCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKEL 117
             +  FL+ CFLC + L P +DIYMY+GD+ +CS++CR++Q+  DE++ L
Sbjct: 69  YQDSGFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEESL 112

[Close]

BLAST of Lag0003182 vs. ExPASy Swiss-Prot
Match: Q9FGQ9 (FCS-Like Zinc finger 1 OS=Arabidopsis thaliana OX=3702 GN=FLZ1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 70  PCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEAS-TRKILASFR 129
           P FL +CFLC K L    DIYMYRGD  +CS +CR +QIE DE KE + + +  + ++ R
Sbjct: 95  PHFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEKKQNLSHSVKSAMR 154

Query: 130 QCHKNEPSETR 140
           +  ++ P+ +R
Sbjct: 155 RKEQSSPTRSR 165

[Close]

BLAST of Lag0003182 vs. ExPASy Swiss-Prot
Match: Q8VZM9 (FCS-Like Zinc finger 2 OS=Arabidopsis thaliana OX=3702 GN=FLZ2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-10
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 70  PCFLKTCFLCHKNLDPQEDIYMYRGDQGYCSIKCRNQQIETDEKKELEASTRKILASFRQ 129
           P FL +CFLC K L    DI+MYRGD  +CS +CR +QIE DE KE + S    + + R+
Sbjct: 74  PHFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEKKQSLSTSVKAMRR 133

Query: 130 CHKNEPSET 139
             K   S +
Sbjct: 134 NEKRSSSSS 142

The following BLAST results are available for this feature:

BLAST of Lag0003182 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896964.1	1.8e-57	75.61	FCS-Like Zinc finger 17-like isoform X1 [Benincasa hispida]	[more]
XP_008462244.1	1.5e-56	75.46	PREDICTED: uncharacterized protein LOC103500647 [Cucumis melo] >KAA0059360.1 DUF...	[more]
XP_004141729.1	3.4e-56	74.23	FCS-Like Zinc finger 17 [Cucumis sativus] >KGN45444.1 hypothetical protein Csa_0...	[more]
XP_022964037.1	1.1e-54	77.27	uncharacterized protein LOC111464182 [Cucurbita moschata] >XP_023515161.1 unchar...	[more]
XP_038896965.1	1.4e-54	74.39	FCS-Like Zinc finger 17-like isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0003182 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DO11	1.8e-20	46.72	FCS-Like Zinc finger 17 OS=Arabidopsis thaliana OX=3702 GN=FLZ17 PE=1 SV=1	[more]
P0DO12	1.8e-20	46.72	FCS-Like Zinc finger 18 OS=Arabidopsis thaliana OX=3702 GN=FLZ18 PE=1 SV=1	[more]
Q9FH22	3.4e-11	33.64	FCS-Like Zinc finger 15 OS=Arabidopsis thaliana OX=3702 GN=FLZ15 PE=1 SV=1	[more]
Q9FGQ9	4.9e-10	43.66	FCS-Like Zinc finger 1 OS=Arabidopsis thaliana OX=3702 GN=FLZ1 PE=1 SV=1	[more]
Q8VZM9	6.5e-10	44.93	FCS-Like Zinc finger 2 OS=Arabidopsis thaliana OX=3702 GN=FLZ2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007650	Zf-FLZ domain	PFAM	PF04570	zf-FLZ	coord: 67..114 e-value: 5.0E-21 score: 73.9
IPR007650	Zf-FLZ domain	PROSITE	PS51795	ZF_FLZ	coord: 71..115 score: 22.20907
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
IPR044181	FCS-Like Zinc finger 17/18	PANTHER	PTHR47847	FCS-LIKE ZINC FINGER 17	coord: 5..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003182.1	Lag0003182.1	mRNA