Lag0003169 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003169
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Acyl carrier protein
Location	chr4: 48644201 .. 48646009 (+)
RNA-Seq Expression	Lag0003169
Synteny	Lag0003169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTTCGCTTCATCTCTCTCCACGACGCTTGTGGTCACCTCTGCTGCAACGGGAAATAGGTGCACTGCTTTCCGTTTGCACAACACCCTGTCAGTCAGAGTGAGTCTCCAATCCACATAATTTTCGATTGTGTTATAGTCTTAACTAATTGAGTTATGCTCGAGTTGACACAAATTTTGATGTACGATAGGGAAAAAGGAAAATTTGTAGGTTGAAATTGGACTAATTCTGTGAGGTTGAAATTGTGCAGGATGGGACTTTGTTTTGTGGGCAGAGAGTGTTTCCCAACATCCAAATGGCAAAGGCTGCAAAAGGACAATTCCCACTTCCTAGCTACTTCAAATCAAAGATTTCTTGCTCCCTTGTATTGTACCTTCCTCCTTAAACTCAAACTTTAATTTCTTATAGGCGCATTTACATATACATATTTTGTTCTGTAATGATTGCATTTAAATTTCTAGCTTTTGAATATCATATTTTGTTTCCTTGTCAATTCAAGTATGGACTGCAAACAAAAATTTAAAATCGAGATTTCATGCAATATATATATTTTTAATTCAACAATATGTAGTGATAGGATTTGAATTTTGAATTTACGAGTTGAGCTATACAAATAAAATTGAACTCTAGGTTTTCATCATATTTTAATGTGTTTGGTGACAGACTTAGAATCTAAATATACTAAAAGTATGCCTAATTTCAAAATTTTCCCTTTCTAAGTTATGTGTTCAGATGCAATATATATATACCATTTTCCTATAAACTAATCAACCAAACAAAGTATTTCAAAAAAAAAAAAAAAATCAACCAAACAATAATTCAATAAAATTGTATTTAATTTAGTGAATCTAAAAACAAAAGAGTTGAATCTAGAGTAAAATTCACTAAACAAGTTTTTTTCTTTTAATATATAATCCATACAAAATTTTCTTACTAAATTTTAAAACAACCTAAACCTAATTAACTTAATCGATCAAAATAAGTTGAATCCCACTCCATCATATGTAGTGTCCTGAAAAAAGGAACTTAAAGAAAATAGTTTTCGTATATTGCTTTCAAAAGTTTTTTGGTGGGCAAAAATATTCAAGTATATCTTAAAATGATTTTAAAAAAATGTCAGTAAATGAACTTTGCTTTCAAAAAATGGAAAATAAAAGAAGAAAGAATGGACCACACCAAAAAGTAACCAACACTTCCTCCTTATTGATGAGATATAAAGAAACTTTACTGTTATTATAATTATTGGACACATAATTATTCTCAAAAAAAAAAAAAAAAAAAAAAAGGACACATAATAAAAAAGAAAAACACTTCAAATTCATTGACAGAAAAGGGATAAAATTGGTTGGAACTTTTAAACAAGTAGAAAAAAAATAAGTGGGAGGCAGAACTAAAAGAAAGAAAAATAGTTGAATTAAATTAAGAGTGAAAATTGAAATGGGTATGTTGTAAAAATGTGCAGGCGCAACCAGAGACTCTGCAAGTTGTTCAAGAAATAATCGCCAAGCAACTCTCCCTGGAACAAAGCGCAGTGATCCCTCAAACAAAGTTTTCTGATTTGGGAGCTGATTCTCTCGACACAGTGAGTGAACTCCAAATTTTAAACCAACAGCACACGATGAAAAACTTGAGTAAAATTATAATTCATAACTAACATTAAAGGAACACTCACAGGTTGAGATCATGATGGCTTTGGAAGAGAAGTTCGGAGTGTCCATCGGAGAAGGCGGAGCCGAGGGCATCTCGACTGTTCAAGACGCTGCCGATCTGATCGAGAAAGTCAAGGCATCCTCTGCAAGTTAA

mRNA sequence

ATGTCGTCCTTCGCTTCATCTCTCTCCACGACGCTTGTGGTCACCTCTGCTGCAACGGGAAATAGGTGCACTGCTTTCCGTTTGCACAACACCCTGTCAGTCAGAGATGGGACTTTGTTTTGTGGGCAGAGAGTGTTTCCCAACATCCAAATGGCAAAGGCTGCAAAAGGACAATTCCCACTTCCTAGCTACTTCAAATCAAAGATTTCTTGCTCCCTTGCGCAACCAGAGACTCTGCAAGTTGTTCAAGAAATAATCGCCAAGCAACTCTCCCTGGAACAAAGCGCAGTGATCCCTCAAACAAAGTTTTCTGATTTGGGAGCTGATTCTCTCGACACAGTTGAGATCATGATGGCTTTGGAAGAGAAGTTCGGAGTGTCCATCGGAGAAGGCGGAGCCGAGGGCATCTCGACTGTTCAAGACGCTGCCGATCTGATCGAGAAAGTCAAGGCATCCTCTGCAAGTTAA

Coding sequence (CDS)

ATGTCGTCCTTCGCTTCATCTCTCTCCACGACGCTTGTGGTCACCTCTGCTGCAACGGGAAATAGGTGCACTGCTTTCCGTTTGCACAACACCCTGTCAGTCAGAGATGGGACTTTGTTTTGTGGGCAGAGAGTGTTTCCCAACATCCAAATGGCAAAGGCTGCAAAAGGACAATTCCCACTTCCTAGCTACTTCAAATCAAAGATTTCTTGCTCCCTTGCGCAACCAGAGACTCTGCAAGTTGTTCAAGAAATAATCGCCAAGCAACTCTCCCTGGAACAAAGCGCAGTGATCCCTCAAACAAAGTTTTCTGATTTGGGAGCTGATTCTCTCGACACAGTTGAGATCATGATGGCTTTGGAAGAGAAGTTCGGAGTGTCCATCGGAGAAGGCGGAGCCGAGGGCATCTCGACTGTTCAAGACGCTGCCGATCTGATCGAGAAAGTCAAGGCATCCTCTGCAAGTTAA

Protein sequence

MSSFASSLSTTLVVTSAATGNRCTAFRLHNTLSVRDGTLFCGQRVFPNIQMAKAAKGQFPLPSYFKSKISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMALEEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS

Homology

[Close]

BLAST of Lag0003169 vs. NCBI nr
Match: KAE8646494.1 (hypothetical protein Csa_016687 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 2   SSFASSLSTTLVVTSAATGNRCTAFRLHNTLSVRDGTLFCGQRVFPNIQMAKAAKGQFPL 61
           SSFASS   T    +++  N+ T     N+LS RDG+LFCG+RVFP++++AKAAKG   L
Sbjct: 3   SSFASSPLPTTFTCTSSMRNKSTVLYSRNSLSARDGSLFCGERVFPSMKVAKAAKGASSL 62

Query: 62  PSYFKSKISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMALE 121
              F+SKI CS+AQPETL+VVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMALE
Sbjct: 63  SKSFRSKICCSVAQPETLEVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMALE 122

Query: 122 EKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156
           E+FGVSIGEGGAEGISTVQDAADLIEKVKASSAS
Sbjct: 123 ERFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156

[Close]

BLAST of Lag0003169 vs. NCBI nr
Match: XP_008462262.1 (PREDICTED: acyl carrier protein 1, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 122/155 (78.71%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 2   SSFASS-LSTTLVVTSAATGNRCTAFRLHNTLSVRDGTLFCGQRVFPNIQMAKAAKGQFP 61
           S+FASS L  TL  TS+   N+ T   LHN LS +DG+LF G+RVFP+++MAKAAKG   
Sbjct: 3   STFASSPLPMTLQCTSSMR-NKSTTLYLHNNLSAKDGSLFRGERVFPSMKMAKAAKGASL 62

Query: 62  LPSYFKSKISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL 121
           L   FKSKI CS+AQPETL+VVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL
Sbjct: 63  LSKSFKSKICCSVAQPETLEVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL 122

Query: 122 EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156
           EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS
Sbjct: 123 EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156

[Close]

BLAST of Lag0003169 vs. NCBI nr
Match: XP_023514490.1 (acyl carrier protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 5.9e-50
Identity = 122/156 (78.21%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MSSFA-SSLSTTLVVTSAATGNRCTAFRLHNTLSVRDGTLFCGQRVFPNIQMAKAAKGQF 60
           MSS A S L TTL  T++   + CTA+R  N+L  R  +LFC QRVFP+IQMAK A+G +
Sbjct: 1   MSSLALSPLLTTLASTTSI--SNCTAWRSRNSLFDR-VSLFCEQRVFPSIQMAKPARGLY 60

Query: 61  PLPSYFKSKISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMA 120
            LP+YFKS ISCSLAQPET+QVVQEIIAKQLSLEQSAVIPQTKFS+LGADSLDTVEIMMA
Sbjct: 61  QLPTYFKSNISCSLAQPETMQVVQEIIAKQLSLEQSAVIPQTKFSELGADSLDTVEIMMA 120

Query: 121 LEEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156
           LEEKFGVSIGEGGAEGISTVQDAADLIEKVK SSAS
Sbjct: 121 LEEKFGVSIGEGGAEGISTVQDAADLIEKVKTSSAS 153

[Close]

BLAST of Lag0003169 vs. NCBI nr
Match: XP_038897463.1 (acyl carrier protein-like [Benincasa hispida])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 120/155 (77.42%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 1   MSSFASSLSTTLVVTSAATGNRCTAFRLHNTLSVRDGTLFCGQRVFPNIQMAKAAKGQFP 60
           MSSF S    T +  + +T N+ T   L ++LS RDGTL CGQR+F N++MAKA+KG   
Sbjct: 1   MSSFVSLPLLTTLPCTPSTRNKSTILHL-SSLSARDGTLLCGQRLFSNMRMAKASKGASA 60

Query: 61  LPSYFKSKISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL 120
           LP+ FKS ISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL
Sbjct: 61  LPT-FKSNISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL 120

Query: 121 EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156
           EEKFGVSIGEGGAEGISTVQDA DLIEKVKASSAS
Sbjct: 121 EEKFGVSIGEGGAEGISTVQDAVDLIEKVKASSAS 153

[Close]

BLAST of Lag0003169 vs. NCBI nr
Match: KAA0059374.1 (acyl carrier protein 1 [Cucumis melo var. makuwa] >TYK03952.1 acyl carrier protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 121/155 (78.06%), Postives = 132/155 (85.16%), Query Frame = 0


Query: 2   SSFASS-LSTTLVVTSAATGNRCTAFRLHNTLSVRDGTLFCGQRVFPNIQMAKAAKGQFP 61
           S+FASS L  TL  TS+   N+ T   L N LS +DG+LF G+RVFP+++MAKAAKG   
Sbjct: 3   STFASSPLPMTLPCTSSMR-NKSTTLYLRNNLSAKDGSLFRGERVFPSMKMAKAAKGASL 62

Query: 62  LPSYFKSKISCSLAQPETLQVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL 121
           L   FKSKI CS+AQPETL+VVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL
Sbjct: 63  LSKSFKSKICCSVAQPETLEVVQEIIAKQLSLEQSAVIPQTKFSDLGADSLDTVEIMMAL 122

Query: 122 EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156
           EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS
Sbjct: 123 EEKFGVSIGEGGAEGISTVQDAADLIEKVKASSAS 156

[Close]

BLAST of Lag0003169 vs. ExPASy Swiss-Prot
Match: P52411 (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 33  SVRDGTLFCGQRVFPNIQMAKAAKGQFPLPSYFKSKISCSLAQPETLQVVQEIIAKQLSL 92
           S+R  +L   ++ FP+++ +K         S F  ++SC  A+PET+  V  I+ KQL+L
Sbjct: 27  SLRSVSLPVSRKSFPSLKSSK---------SSFALRVSCQ-AKPETVAKVCGIVKKQLAL 86

Query: 93  -EQSAVIPQTKFSDLGADSLDTVEIMMALEEKFGVSIGEGGAEGISTVQDAADLIEKV 150
            + S V   +KFS LGADSLDTVEI+M LEE+FG+S+ E  A+ I TVQDAADLIEK+
Sbjct: 87  PDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKL 134

[Close]

BLAST of Lag0003169 vs. ExPASy Swiss-Prot
Match: P52414 (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 33  SVRDGTLFCGQRVFPNIQMAKAAKGQFPLPSYFKSKISCSLAQPETLQVVQEIIAKQLSL 92
           S+R  +L   ++ FP++   +++KG F       +++SC  A+PET+  V  I+ KQL+L
Sbjct: 27  SLRSVSLPVSRKSFPSL---RSSKGSF-------ARVSCQ-AKPETVAKVCRIVKKQLAL 86

Query: 93  -EQSAVIPQTKFSDLGADSLDTVEIMMALEEKFGVSIGEGGAEGISTVQDAADLIEKV 150
            + S V   +KFS LGADSLDTVEI+M LEE+FG+S+ E  A+ I TVQDAADLIEK+
Sbjct: 87  PDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKL 133

[Close]

BLAST of Lag0003169 vs. ExPASy Swiss-Prot
Match: P93092 (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.8e-17
Identity = 47/82 (57.32%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 69  ISCSLAQPETLQVVQEIIAKQLSL-EQSAVIPQTKFSDLGADSLDTVEIMMALEEKFGVS 128
           + C  A+PET++ V  I+ KQL+L + SAV  ++KF+ LGADSLDTVEI+M LEE+FG++
Sbjct: 49  VVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGIN 108

Query: 129 IGEGGAEGISTVQDAADLIEKV 150
           + E  A+ I+TVQDAADLIEK+
Sbjct: 109 VEEESAQSIATVQDAADLIEKL 130

[Close]

BLAST of Lag0003169 vs. ExPASy Swiss-Prot
Match: P52413 (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 33  SVRDGTLFCGQRVFPNIQMAKAAKGQFPLPSYFKSKISCSLAQPETLQVVQEIIAKQLSL 92
           S+R  +L    ++FP+++ ++        P  F+    C  A+ ET+  V EI+ KQL+L
Sbjct: 31  SLRSVSLPISGKIFPSLRSSRG-------PLSFR---VCCQAKQETVTRVCEIVKKQLAL 90

Query: 93  -EQSAVIPQTKFSDLGADSLDTVEIMMALEEKFGVSIGEGGAEGISTVQDAADLIEKV 150
            E S V   +KFS LGADSLDTVEI+M LEE+FG+S+ E  A+ I TVQDAADLIEK+
Sbjct: 91  PEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKL 138

[Close]

BLAST of Lag0003169 vs. ExPASy Swiss-Prot
Match: P52412 (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-16
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 48  NIQMAKAAKGQFPLPSYFKSKISCSLAQPETLQVVQEIIAKQLSL-EQSAVIPQTKFSDL 107
           ++ +  + K  F     F  +++C  A+PET+  V  I+ KQL+L + S V   +KFS L
Sbjct: 30  SVSLPVSRKSFFSRRGSFSLRVNCQ-AKPETVTKVCNIVKKQLALPDDSDVSGVSKFSAL 89

Query: 108 GADSLDTVEIMMALEEKFGVSIGEGGAEGISTVQDAADLIEKV 150
           GADSLDTVEI+M LEE+FG+S+ E  A+ I TVQDAADLIEK+
Sbjct: 90  GADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKL 131

The following BLAST results are available for this feature:

BLAST of Lag0003169 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646494.1	1.2e-50	75.32	hypothetical protein Csa_016687 [Cucumis sativus]	[more]
XP_008462262.1	1.5e-50	78.71	PREDICTED: acyl carrier protein 1, chloroplastic-like isoform X1 [Cucumis melo]	[more]
XP_023514490.1	5.9e-50	78.21	acyl carrier protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038897463.1	1.3e-49	77.42	acyl carrier protein-like [Benincasa hispida]	[more]
KAA0059374.1	1.3e-49	78.06	acyl carrier protein 1 [Cucumis melo var. makuwa] >TYK03952.1 acyl carrier prote...	[more]

BLAST of Lag0003169 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52411	2.3e-17	48.31	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=...	[more]
P52414	2.3e-17	48.31	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 ...	[more]
P93092	6.8e-17	57.32	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 S...	[more]
P52413	2.0e-16	47.46	Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.3 PE=...	[more]
P52412	3.4e-16	49.51	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003231	Acyl carrier protein (ACP)	TIGRFAM	TIGR00517	TIGR00517	coord: 77..148 e-value: 2.7E-24 score: 82.8
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 77..150 score: 17.299604
IPR036736	ACP-like superfamily	GENE3D	1.10.1200.10		coord: 72..150 e-value: 1.4E-23 score: 85.0
IPR036736	ACP-like superfamily	SUPERFAMILY	47336	ACP-like	coord: 75..149
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 81..146 e-value: 2.3E-12 score: 47.1
IPR009081	Phosphopantetheine binding ACP domain	PROSITE	PS50075	CARRIER	coord: 76..150 score: 20.112894
None	No IPR available	PANTHER	PTHR46153:SF2	ACYL CARRIER PROTEIN	coord: 40..153
IPR044813	Acyl carrier protein, chloroplastic	PANTHER	PTHR46153	ACYL CARRIER PROTEIN	coord: 40..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003169.1	Lag0003169.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0009536	plastid
molecular_function	GO:0000036	acyl carrier activity