Lag0003065 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0003065
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 47798128 .. 47799295 (-)
RNA-Seq ExpressionLag0003065
SyntenyLag0003065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCAGCAAAGGTCTAGTGCTGTTGTTTTTGTTGCCCTTTTCATAGTTCTCATGGTGGCTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGGTGAGCAAATCAGTGTCATTAATATAATCAGAATGTTCGGGAGCTGTTTTGAAAAGTAAAATATGTCGTTAGTGCTTATCGAGTTATAAGCACCGAATGACTTCAACTGTACAATAACTTTAAACTTTAATTAGTTACTTTTTTTAGTACTCGGGATTAAAAGTTGCGTCAATTTGGACTTTTCACTTTTAAGAGCTTCGTAATAGTCAAATGTTATTTTGATTAAGGCTTACTAGACGTCTTTCTTATTAGTGGGTTGGGATGTTGATGTGTGTTAAATGATGTGGGATCAAGGGTTAGGTATCAGTTTGGCTCAAATTTATGGTGAACAAATTGGGGTTGACTTGGGGTAGTATTGATGCTTGTCCAAAATGCGGATGGAAAAGAAAACAAATCAATAATGAGATAGACTAGAGATATCTAGTTTTCTTTTCCTTATTGCCAATTTTTTTTTTTTTTGGTTAAAACATTATTTTGGTTTTGATTTGTGTTCTTGCACTCTCAAATGTCTAAATTCAATATCCATATACTCTCTATCAATCTTGTTGTTGTTAGTTTGTATGTGCCTTACATACGTTTTCAATGAAGTATCAAATACCTTATAGAGACTTTTTTTTTTTGTTTTTTAAATAGTTAACCATAAACTAACAATAATAGAAACTAAATTGAATATTTATCGAAACTATAGAACTATATGTAGAAGGTATATAAATGTTTAGGTATAAGAGAATAAAAATAACAGTAAAAAAATTTTATACAACTAAATTCATACAAAGTTTGAACCACATAAGTGAAATAGGTAATTCAACTTAAAACTCTTAATAAAACTATTCAATAACAACTCTTGATTGAGAAAAAGAAAAAAAGGAATTGTTTTCCAAAATAGGGTTCCAAACAAACTATGTTATGTTGTGGGGATATTGAATTGGTTGAATTAATTTGGTGTGTTTTGGTATGGCAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACTAGGCCTTTGTTGCAGTTGTTGCTCCAATTCTGAGTTGCCACCCTGA

mRNA sequence

ATGGCCCAGCAAAGGTCTAGTGCTGTTGTTTTTGTTGCCCTTTTCATAGTTCTCATGGTGGCTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACTAGGCCTTTGTTGCAGTTGTTGCTCCAATTCTGAGTTGCCACCCTGA

Coding sequence (CDS)

ATGGCCCAGCAAAGGTCTAGTGCTGTTGTTTTTGTTGCCCTTTTCATAGTTCTCATGGTGGCTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACTAGGCCTTTGTTGCAGTTGTTGCTCCAATTCTGAGTTGCCACCCTGA

Protein sequence

MAQQRSSAVVFVALFIVLMVASSPLMLTSSHAARLAKQDPPMCPQCMCCTSPPLGLCCSCCSNSELPP
Homology
[Close]
BLAST of Lag0003065 vs. NCBI nr
Match: KAA0059465.1 (hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK03858.1 hypothetical protein E5676_scaffold347G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 7.1e-16
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 3  QQR--SSAVVFVALFIVLMVASSP--LMLTSSHAARLAKQDPPMCPQCMCCTSPPLGLCC 62
          QQR  ++ +  VA+FIVLMV SSP  +++T+SHAARLAK DPPMCPQCMCC+SPP G CC
Sbjct: 4  QQRCGNNNIGLVAVFIVLMVVSSPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGFCC 63

Query: 63 SCCSNSELPP 69
           CCSNS+LPP
Sbjct: 64 DCCSNSQLPP 73

[Close]
BLAST of Lag0003065 vs. NCBI nr
Match: EEF46335.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-06
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 4  QRSSAVVFVALFIVLMVASSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPLG 63
          QRSS    V +FI+LMV   PLM+  ++AAR A+Q        + PMCPQC CC++PP G
Sbjct: 6  QRSS---LVTIFIILMVL--PLMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPG 65

Query: 64 LCCSCCSNSELP 68
           CC CC+NS  P
Sbjct: 66 SCCKCCTNSVQP 72

The following BLAST results are available for this feature:
BLAST of Lag0003065 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059465.17.1e-1668.57hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK038... [more]
EEF46335.13.9e-0650.00conserved hypothetical protein [Ricinus communis][more]
BLAST of Lag0003065 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0003065.1Lag0003065.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane