Lag0003033 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0003033
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRRM Nup35-type domain-containing protein
Locationchr4: 47504151 .. 47507036 (-)
RNA-Seq ExpressionLag0003033
SyntenyLag0003033
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGGCTAATAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACCAGGCTAGGGTGAGCCAAAAACTACCCTTTTTTTGGCTTTGGGGGTTTGATTTTTCTTGTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCTAGTGAAGCCTCTCTTGTATTGATTGATGTATGTGTTTACGTACTTTTTAATCGCGAGTTTGGGAATTGTCTAAATTCACTTTTGTCATTGACGACATCGAATAATGATTTTTTTGACAACATTTGAGTAGAAGTGATTTTGGAGAAATCAAAGATTCACTTTAGATGATTCTTGGATAATCTCACCTGTGAAATGAATTTTGGTTGAGTGATTGAACGAGAATCATTTAAACAAATAATTTAGGCCCATTTGATAACTATTTGGTTTTTTATTTTTAGTTTTTGAAAATTAAGCTTATACACACATACTTCCACCTATAAATTTGTTGGTTTTAATATCAATCTTCTACCTTGTTTTCAAAAACCAAGTCCAATTTTGGAAGAAAATTTTTTTTTTTCAAAAACTTGTTTTTGTTTTTAAAATTTGGCTAGGAATTCAAATGCAACCTTAACTAGGATGAAAGCCATGATAGGAAATTTAGGAGAAAACAAGCATAATTTTCAAAAACTAAAAACCAAAAAACGTTATCAAATGGGGTCTTATATTTTTGGGAATTGACTTCTATTCACTTAGTCGTTTTATGATTTCAAAATCAGTTTTTTAAGGGGGAGAACCAATCATTCAAATAAATTATTATTAAACACTTTGCAAGTTATAACACATATTTATGGGCTAAGCAAAGTTCAACTAGTTTAACACATAAATTTCCAATCAAGAAGTCAAATATTTGAGTCTGCGGCTACGTATGTTGTTGAATTGAAAAAGATTGGCACGTGTGTTTGTTAAAATCACTCTCATATATGTCTAGAATTGACTTCTAAACTCTATTTAAATAACGACGTGTATGGATGGAGAGAAACATTGATTTTTATGTGATACTTTTCGTTTCTAATCCATATGAAAGTTTTAGATTGTAGAACGATTTAAACCAATCAACCAGATGATTGAAAGAGGAGGAGAGCCACCACCGCCACCGCCCCCGGGAGATTGTAAGGATGGAAAAGGGAGATGCCAGTGCTCTTACATTTCTACTGAGTCCCCAAATCAACTGCAGCTGCTCAAAGAACCCCTTTCAGCTCCATTTTGAAGCAATCTCAAGTGCTTTCTAGAGTTGATCGCTCTTTAATTTTAGGTTGGATGCTTTTGCTTTTTATGTAAATTGTAATGAATAATTATTGGCTGATTAAACTGCCATTGATAATATAAAAAGTATGATAACCTAGCTAAGAAATATAATATTATTGGTGGTTGGATGATTTCATTTGTTAAAAAGTTTGGACATGGTTGAAAATAATTGACCAAATAGACAGATTTGAAAAATGAGTATTCTTTAAAACCTATTTCTGTAGTTATCCCTTTAAATTTCTATTTCACATGTTTCTAAATTTGAAGAAATAAAAAATCAAATTTGAAAGGAAGAGTTATATTTGGACAAAGTCCCTACAACTTTGGAAGGGTGGATTCAAGACCAAAATTAGTTTCAATAAAAATTCAAGGTAAAACTTTACACTAATTTGAACTTATATCATATTCAAATTAGTGATTAAATAAACAGAGATACTAAATACAGTAGAAGATATTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGTAGAAGACATAATAATAAAAAAATTGTAGATTCAATATTTGACCATTTCGTTGAATTTATAATAAATGATCGAATTTGTTTATGGATATAACCTCTTTACTTATTCTGTTTAAAAAAAAAAACCTCTTTACTTATTCTATCTCAAAAGAAAAAAAAAAAATCTTTACTTATTCATTTTTAAACAAAATTTCAAATAAAAAGAGAGTTTTTTTTTTTGAAACTAAAATAAAAAGAGAGTTTTGAAAATCTTATTTTACATTTATGGAAATTTATAAACTACGGTTATATTATTTTATTTGTCAATTTTTCTTTTTAAAATATTGACAAAACAATTTTATATTTAAAAATAAAACTTGTTAAGTAAAGAATACTTAATAACATCACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCACCAAGCGCACCGCCAAACCGTTCCCCACTGAACGACGGTGGAGTTTAGGGTTTCAAATTCCAAAATATTTAGGTCTTTTCGTCCCATTTGGGCGTCACTTTCGGGAGGGAAAATCCCGAGCGGAAAATCAAATTCCAGAGGCTCCTCGCATTTCAATTTCTCCAATCCAAATCGATCAGTTCAAAGCAGAGCTCGAGCTCTTTCTGAAGGTGAATATCCTAATTTCTTCTCCATTTTATCATCGCCATTTCCCAGTTTCCTCAACTTCGTGTACTGGAATTGCACTCTTGTGTTGTTTGGATTTTTGAGAGAATCAAGACGGACAAAGTGGAAGCTATTTTGCAAATTTCAAGTTCTACTTGTTTGGTTCTGAGTACTTTGGGAAGCTCGAGCTTGGTTGAATTGATCTTTCCCGCGTTTTCCTAGCGGCTGAATGGAGGACGGTGCTGTAGATTTTAAGAAGTGGCCAATCTGGGTTTTTATTTTTAGAGTTAATTGAACTGTATGGTTTATTCTCACGAGCTTTCATGAATCTGATTATCTATTGTTTCTTGATTTATTTTGAAATTCCAGTTTGCTTTCTCTGAATTCATATTTGTGGAGTTTGTTCCGTAA

mRNA sequence

ATGGCTAAGGCTAATAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCTAGTGAAGCCTCTCTTGTATTGATTGATATTGTAGAACGATTTAAACCAATCAACCAGATGATTGAAAGAGGAGGAGAGCCACCACCGCCACCGCCCCCGGGAGATTGTCTTTTCGTCCCATTTGGGCGTCACTTTCGGGAGGGAAAATCCCGAGCGGAAAATCAAATTCCAGAGGCTCCTCGCATTTCAATTTCTCCAATCCAAATCGATCAGTTCAAAGCAGAGCTCGAGCTCTTTCTGAAGTTTGCTTTCTCTGAATTCATATTTGTGGAGTTTGTTCCGTAA

Coding sequence (CDS)

ATGGCTAAGGCTAATAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCTAGTGAAGCCTCTCTTGTATTGATTGATATTGTAGAACGATTTAAACCAATCAACCAGATGATTGAAAGAGGAGGAGAGCCACCACCGCCACCGCCCCCGGGAGATTGTCTTTTCGTCCCATTTGGGCGTCACTTTCGGGAGGGAAAATCCCGAGCGGAAAATCAAATTCCAGAGGCTCCTCGCATTTCAATTTCTCCAATCCAAATCGATCAGTTCAAAGCAGAGCTCGAGCTCTTTCTGAAGTTTGCTTTCTCTGAATTCATATTTGTGGAGTTTGTTCCGTAA

Protein sequence

MAKANNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPINQMIERGGEPPPPPPPGDCLFVPFGRHFREGKSRAENQIPEAPRISISPIQIDQFKAELELFLKFAFSEFIFVEFVP
Homology
[Close]
BLAST of Lag0003033 vs. NCBI nr
Match: XP_038898732.1 (uncharacterized protein LOC120086256 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MAKANNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPINQMI 60
          MAK  NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFK +N M+
Sbjct: 1  MAKP-NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKTMNYML 60

Query: 61 ERGGEPPP--PPPP 73
          E  G+  P  PPPP
Sbjct: 61 EGEGDSQPSLPPPP 73

[Close]
BLAST of Lag0003033 vs. NCBI nr
Match: XP_008462443.1 (PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-20
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 1  MAKANNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPINQMI 60
          MAK  NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLID+VER KP+  M 
Sbjct: 1  MAKP-NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMF 60

Query: 61 ERGG 65
          ERGG
Sbjct: 61 ERGG 63

[Close]
BLAST of Lag0003033 vs. NCBI nr
Match: XP_022992446.1 (uncharacterized protein LOC111488747 [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-19
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 0 

Query: 1  MAKANNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPINQMI 60
          MAK  N  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+EASL+LIDIVER KP+N +I
Sbjct: 1  MAKP-NARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61 ERGGE----------------PPPPPP 72
          E GGE                PPPPPP
Sbjct: 61 EGGGELPLLPPLSSPLSSATGPPPPPP 86

[Close]
BLAST of Lag0003033 vs. NCBI nr
Match: XP_023521779.1 (uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.1 uncharacterized protein LOC111807614 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-19
Identity = 69/126 (54.76%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 1   MAKANNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPINQMI 60
           MAK  N  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+EASL+LIDIVER KP+N MI
Sbjct: 1   MAKP-NARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHMI 60

Query: 61  ERGGEPPPPP----------PPGDCLFVPFGRHFREGKSRAENQIPEAPRISI-SPIQID 116
           ERG  P  PP          PP      PF   ++E + R      +   ISI SP Q+ 
Sbjct: 61  ERGELPLLPPLSSPLSSAAGPPAP----PFVGDYKEERGRC-----QCSYISIESPNQLQ 116

[Close]
BLAST of Lag0003033 vs. NCBI nr
Match: KAG6575517.1 (hypothetical protein SDJN03_26156, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014056.1 hypothetical protein SDJN02_24228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-18
Identity = 61/106 (57.55%), Postives = 70/106 (66.04%), Query Frame = 0 

Query: 1  MAKANNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPINQMI 60
          MAK  N  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+EASL+LIDIVER KP+N +I
Sbjct: 1  MAKP-NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61 ERGGEP--PP------------PPPPGDCLFVPFGRHFREGKSRAE 93
          ERG  P  PP            PPPP      PF   + E + R +
Sbjct: 61 ERGELPLLPPLSSPLSSAAAAGPPPP------PFVGDYNEERGRCQ 99

The following BLAST results are available for this feature:
BLAST of Lag0003033 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898732.12.2e-2182.43uncharacterized protein LOC120086256 [Benincasa hispida][more]
XP_008462443.13.2e-2087.50PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo][more]
XP_022992446.13.5e-1966.67uncharacterized protein LOC111488747 [Cucurbita maxima][more]
XP_023521779.17.9e-1954.76uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.... [more]
KAG6575517.18.7e-1857.55hypothetical protein SDJN03_26156, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0003033 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808EXPRESSED PROTEINcoord: 4..61
NoneNo IPR availablePANTHERPTHR34808:SF5SUBFAMILY NOT NAMEDcoord: 4..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0003033.1Lag0003033.1mRNA