Lag0003009 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003009
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cytochrome c-type biogenesis protein
Location	chr4: 47362078 .. 47363951 (+)
RNA-Seq Expression	Lag0003009
Synteny	Lag0003009

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCCGATGTTTGTTCGTGTGGTTCTGAATTTTGCCGCAATCGAATTGGTTTTAGTTGCTGCATTTGTTGCTCTAATGGTGGAAAAATGGGGCCTAGGGCAATAACGGTTTCCTTCAACAAGAATTCTGTTCCTTGATCCTTGTTCCCAGAATTGCTATTAGCTTCGTGTTGATGAATTTATTTTTGCACCTGATAAACGAGTAGGTCAATCTTGGTTTTTCTAAATTTTTTATTTCCTTCTGTGTATTTATAAATAAAAACTGTTAATAAATTTTACGTGATGGATCTTTGGATATAAGGAGGCTGCAGTCCATTTTTAATTCTGATTTTTTTAAAAAAAATAATTTTGTAAGTTCCTGCTGTTGAAGCTAAACTTTTGAACCACTTTCTTAGGTAAATTGGGTACAAAATTATTTTGCTTTTCACTTTTTTCAGTTCCTTAGATCCCATTGAGAATTCATATAAGAGGATGAATAGCTGGTGGTAGATTCGTAATGATATGTTCTCCCTCTTTGTTGTTTCATAAGATTGTTACTGAAACTTGATGTGCTATTTTTTTTTCCTTACGTGTTCGATGTTTATGAGATTTTCAGCTGAAGAAAGTTTGAAGTTTGAACTCTTAAACTTGGTTTGTCTTTGTCTTTAACTTGTAGTTCGCATTCGAATGATTTCTTGGTATTTTCTTGCAATACAGTCTAAAATGGAGAGTGATGACGATGCTGTAAAAAAACGCAGCTGGTGGAAGCCCGCGCAAGAAACATTAGTCACAATGTCAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGGTATCAGTTATTTAGTTAAACTCCAAGCTGTATAAGTTAACTAAGAGCGGGAAATCAGAGAAACTCTCGACAAGAATCCTTCTTTCTCGTGCAAAGTTGCCCCTCTTTCCTTTGAAGAAAGATGAAAAATAGTTTGGACTAGCAGAAAGTGATGAAAGCTCTTGAAGAGGTGTAATTACAAAAGCTCCTTACAAGAGTGCACCATATCGAGATTATAATGATAATGCACTCCAACATGTAAAGAGGAGAGGAGCAGTCACTGAAGTTCTTATAATTCTTCTCAAACCATCACAATTCAAAGTTTCTAACTCTTCCATGGGGCAATAATTCTTCCTTGGATTAGTATCTATGCTGGAAGTCTCTTGAAATTTTAAATGATGCACATTTTTCTCCATTGGATGACAGTGCCTCCTATGGCATAATTATGGTCTAAGAAGACCGATTAACCTGATCATGAATCTTTGCTACATAATGATTACTCACTGATATGTTAAGTTTCCTATCTTGTGCCTATAATTTTGCATCAATATATTTCTGCAATTAATTTGCTTGATATTGGGTTGTATTTGAAATATCACCATAGTTGATCCGTGATGAGATTCGATCTGGGAAGACCGACAAGGACATCTATAAAAAGCTTGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTCAGTTAATATTAGTAAGAAATTCAAAATTAAGTAACTATTTCTGCCTATTTCTTCTAATTTAGTTTTAAATATGCTACTTTGGAATAGTTGTAGTGGCTGGCGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATCATGGCTTTAAATTTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTGCTCTCACCTCCACCTTCTCAGAGAAGTATGTCTTCTGGTGGAGAAGTTGGCGAAGGCAGTGAGACAACTACTCTCTATTGCTAG

mRNA sequence

ATGTTCGCCGATGTTTGTTCGTGTGGTTCTGAATTTTGCCGCAATCGAATTGGTTTTAGTTGCTGCATTTGTTGCTCTAATGGTGGAAAAATGGGGCCTAGGGCAATAACGGTTTCCTTCAACAAGAATTCTCTGGTGGAAGCCCGCGCAAGAAACATTAGTCACAATGTCAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGTGATGAGATTCGATCTGGGAAGACCGACAAGGACATCTATAAAAAGCTTGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTCATTGTAGTGGCTGGCGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATCATGGCTTTAAATTTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTGCTCTCACCTCCACCTTCTCAGAGAAGTATGTCTTCTGGTGGAGAAGTTGGCGAAGGCAGTGAGACAACTACTCTCTATTGCTAG

Coding sequence (CDS)

ATGTTCGCCGATGTTTGTTCGTGTGGTTCTGAATTTTGCCGCAATCGAATTGGTTTTAGTTGCTGCATTTGTTGCTCTAATGGTGGAAAAATGGGGCCTAGGGCAATAACGGTTTCCTTCAACAAGAATTCTCTGGTGGAAGCCCGCGCAAGAAACATTAGTCACAATGTCAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGTGATGAGATTCGATCTGGGAAGACCGACAAGGACATCTATAAAAAGCTTGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTCATTGTAGTGGCTGGCGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATCATGGCTTTAAATTTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTGCTCTCACCTCCACCTTCTCAGAGAAGTATGTCTTCTGGTGGAGAAGTTGGCGAAGGCAGTGAGACAACTACTCTCTATTGCTAG

Protein sequence

MFADVCSCGSEFCRNRIGFSCCICCSNGGKMGPRAITVSFNKNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLENDYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLTPKEKQTMLDLLSPPPSQRSMSSGGEVGEGSETTTLYC

Homology

[Close]

BLAST of Lag0003009 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-66
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDK+IYKKLEN
Sbjct: 10  KTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKKLEN 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGET+LYTPKFDLQTAALWLSPV+ VAGAAAGVWAYSKHKQ+SNVHIMALNLVRGVPLT
Sbjct: 70  DYGETVLYTPKFDLQTAALWLSPVL-VAGAAAGVWAYSKHKQRSNVHIMALNLVRGVPLT 129

Query: 162 PKEKQTMLDLLSPPPSQRSMSS 184
           PKEKQTMLDLLSPPPSQR+ SS
Sbjct: 130 PKEKQTMLDLLSPPPSQRTSSS 150

[Close]

BLAST of Lag0003009 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 7.5e-66
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 39  SFNKNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKK 98
           +  K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+DKDIYKK
Sbjct: 7   ALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYKK 66

Query: 99  LENDYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGV 158
           LENDYGETILYTPKFDLQTA LWLSPVI VAGAA GVWAYSKHKQ+SNVHIMALNLVRGV
Sbjct: 67  LENDYGETILYTPKFDLQTAGLWLSPVI-VAGAAVGVWAYSKHKQRSNVHIMALNLVRGV 126

Query: 159 PLTPKEKQTMLDLLSPPPSQRSMSS 184
           PLTPKEKQTMLDLLSPPPSQR+ SS
Sbjct: 127 PLTPKEKQTMLDLLSPPPSQRTPSS 150

[Close]

BLAST of Lag0003009 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 39  SFNKNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKK 98
           +  K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDK+IYKK
Sbjct: 7   ALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKK 66

Query: 99  LENDYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGV 158
           LENDYGETILYTPKFDLQTA LWLSPV+ VAGAA GVWAYSKHKQ+SNVHIMALNLVRGV
Sbjct: 67  LENDYGETILYTPKFDLQTAGLWLSPVL-VAGAAVGVWAYSKHKQRSNVHIMALNLVRGV 126

Query: 159 PLTPKEKQTMLDLLSPPPSQRSMSS 184
           PLTPKEKQTMLDLLSPPPSQR+ SS
Sbjct: 127 PLTPKEKQTMLDLLSPPPSQRTPSS 150

[Close]

BLAST of Lag0003009 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.2 bits (648), Expect = 9.1e-64
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+DK+I+KKLEN
Sbjct: 10  KTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKLEN 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGETILYTPKFDLQTAALWLSPV+ VAGAAAGVWAYSK+KQKSNVHIMALN+VRGVPLT
Sbjct: 70  DYGETILYTPKFDLQTAALWLSPVL-VAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPLT 129

Query: 162 PKEKQTMLDLLSPPPSQRSMS 183
           P+EKQTMLDLLSPPP QR+ S
Sbjct: 130 PREKQTMLDLLSPPPPQRAAS 149

[Close]

BLAST of Lag0003009 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 254.2 bits (648), Expect = 9.1e-64
Identity = 127/142 (89.44%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+DK+IY+KLE+
Sbjct: 10  KTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIYRKLED 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGET+LYTPKFDLQTAALWLSPV+ VAGAAAGVWAY+KHKQK+NVHIMALNLVRGVPLT
Sbjct: 70  DYGETVLYTPKFDLQTAALWLSPVL-VAGAAAGVWAYNKHKQKTNVHIMALNLVRGVPLT 129

Query: 162 PKEKQTMLDLLSPPPSQRSMSS 184
           PKEKQTMLDLL+PPP QR+ SS
Sbjct: 130 PKEKQTMLDLLTPPPPQRTASS 150

[Close]

BLAST of Lag0003009 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 8.3e-60
Identity = 111/135 (82.22%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           +  ++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+DK+IYKKL+ 
Sbjct: 9   QRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIYKKLQA 68

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGETILYTPKFDLQTAA+WLSPVI V G AAGVWAY KH+Q++NVHIMALNLVRGVPLT
Sbjct: 69  DYGETILYTPKFDLQTAAIWLSPVI-VGGVAAGVWAYKKHRQRTNVHIMALNLVRGVPLT 128

Query: 162 PKEKQTMLDLLSPPP 177
           P+EK+TMLD+L+PPP
Sbjct: 129 PREKETMLDVLTPPP 142

[Close]

BLAST of Lag0003009 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 8.3e-60
Identity = 111/135 (82.22%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           +  ++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+DK+IYKKL+ 
Sbjct: 9   QRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIYKKLQA 68

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGETILYTPKFDLQTAA+WLSPVI V G AAGVWAY KH+Q++NVHIMALNLVRGVPLT
Sbjct: 69  DYGETILYTPKFDLQTAAIWLSPVI-VGGVAAGVWAYQKHRQRTNVHIMALNLVRGVPLT 128

Query: 162 PKEKQTMLDLLSPPP 177
           P+EK+TMLD+L+PPP
Sbjct: 129 PREKETMLDVLTPPP 142

[Close]

BLAST of Lag0003009 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-50
Identity = 97/134 (72.39%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  +++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTDK+IY KLE+
Sbjct: 10  KAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTDKEIYSKLED 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           ++GET+LY PKFDLQTAALWL+PVI+  G AAG+  Y KH+ + NV IMALNL+RGVPLT
Sbjct: 70  EFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGI-VYQKHRLRKNVDIMALNLIRGVPLT 129

Query: 162 PKEKQTMLDLLSPP 176
           PKE+ T+LD+L PP
Sbjct: 130 PKERVTILDVLIPP 142

[Close]

BLAST of Lag0003009 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-15
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 47  EARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLENDYGET 106
           E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G ++  +   L   YGE 
Sbjct: 34  ETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLDFLVARYGEF 93

Query: 107 ILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLTPKEKQ 166
           +L  P+F+ QT  LWL   +++ G    +W   + + +S   + A       PLTP E+ 
Sbjct: 94  VLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------PPLTPDEEA 153

Query: 167 TMLDLLS 174
            +  L+S
Sbjct: 154 RLAALMS 154

[Close]

BLAST of Lag0003009 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 46  VEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLENDYGE 105
           +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G +D+ +   + + YGE
Sbjct: 32  LEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVISYVVSRYGE 91

Query: 106 TILYTPKFDLQTAALWLSP-VIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLTPKE 165
            +L  P+ + +T  LW  P +++VAG    V A  +   +          V G PL+ +E
Sbjct: 92  FVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VPGAPLSDEE 151

Query: 166 KQTMLDLLSP 175
           K+ +  LL P
Sbjct: 152 KERLDRLLRP 151

[Close]

BLAST of Lag0003009 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.6e-66
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 39  SFNKNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKK 98
           +  K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+DKDIYKK
Sbjct: 7   ALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYKK 66

Query: 99  LENDYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGV 158
           LENDYGETILYTPKFDLQTA LWLSPVI VAGAA GVWAYSKHKQ+SNVHIMALNLVRGV
Sbjct: 67  LENDYGETILYTPKFDLQTAGLWLSPVI-VAGAAVGVWAYSKHKQRSNVHIMALNLVRGV 126

Query: 159 PLTPKEKQTMLDLLSPPPSQRSMSS 184
           PLTPKEKQTMLDLLSPPPSQR+ SS
Sbjct: 127 PLTPKEKQTMLDLLSPPPSQRTPSS 150

[Close]

BLAST of Lag0003009 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.2e-66
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 39  SFNKNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKK 98
           +  K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDK+IYKK
Sbjct: 7   ALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKK 66

Query: 99  LENDYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGV 158
           LENDYGETILYTPKFDLQTA LWLSPV+ VAGAA GVWAYSKHKQ+SNVHIMALNLVRGV
Sbjct: 67  LENDYGETILYTPKFDLQTAGLWLSPVL-VAGAAVGVWAYSKHKQRSNVHIMALNLVRGV 126

Query: 159 PLTPKEKQTMLDLLSPPPSQRSMSS 184
           PLTPKEKQTMLDLLSPPPSQR+ SS
Sbjct: 127 PLTPKEKQTMLDLLSPPPSQRTPSS 150

[Close]

BLAST of Lag0003009 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.2e-66
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 39  SFNKNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKK 98
           +  K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDK+IYKK
Sbjct: 7   ALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKK 66

Query: 99  LENDYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGV 158
           LENDYGETILYTPKFDLQTA LWLSPV+ VAGAA GVWAYSKHKQ+SNVHIMALNLVRGV
Sbjct: 67  LENDYGETILYTPKFDLQTAGLWLSPVL-VAGAAVGVWAYSKHKQRSNVHIMALNLVRGV 126

Query: 159 PLTPKEKQTMLDLLSPPPSQRSMSS 184
           PLTPKEKQTMLDLLSPPPSQR+ SS
Sbjct: 127 PLTPKEKQTMLDLLSPPPSQRTPSS 150

[Close]

BLAST of Lag0003009 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.4e-64
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+DK+I+KKLEN
Sbjct: 10  KTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKLEN 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGETILYTPKFDLQTAALWLSPV+ VAGAAAGVWAYSK+KQKSNVHIMALN+VRGVPLT
Sbjct: 70  DYGETILYTPKFDLQTAALWLSPVL-VAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPLT 129

Query: 162 PKEKQTMLDLLSPPPSQRSMS 183
           P+EKQTMLDLLSPPP QR+ S
Sbjct: 130 PREKQTMLDLLSPPPPQRAAS 149

[Close]

BLAST of Lag0003009 vs. ExPASy TrEMBL
Match: A0A6J1GPV4 (Cytochrome c-type biogenesis protein OS=Cucurbita moschata OX=3662 GN=LOC111456378 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.4e-64
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  LVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+DK+I+KKLEN
Sbjct: 10  KTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKLEN 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           DYGETILYTPKFDLQTAALWLSPV+ VAGAAAGVWAYSK+KQKSNVHIMALN+VRGVPLT
Sbjct: 70  DYGETILYTPKFDLQTAALWLSPVL-VAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPLT 129

Query: 162 PKEKQTMLDLLSPPPSQRSMS 183
           P+EKQTMLDLLSPPP QR+ S
Sbjct: 130 PREKQTMLDLLSPPPPQRAAS 149

[Close]

BLAST of Lag0003009 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-52
Identity = 97/134 (72.39%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  +++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTDK+IY KLE+
Sbjct: 10  KAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTDKEIYSKLED 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           ++GET+LY PKFDLQTAALWL+PVI+  G AAG+  Y KH+ + NV IMALNL+RGVPLT
Sbjct: 70  EFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGI-VYQKHRLRKNVDIMALNLIRGVPLT 129

Query: 162 PKEKQTMLDLLSPP 176
           PKE+ T+LD+L PP
Sbjct: 130 PKERVTILDVLIPP 142

[Close]

BLAST of Lag0003009 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-52
Identity = 97/134 (72.39%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 42  KNSLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKDIYKKLEN 101
           K  +++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTDK+IY KLE+
Sbjct: 10  KAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTDKEIYSKLED 69

Query: 102 DYGETILYTPKFDLQTAALWLSPVIVVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLT 161
           ++GET+LY PKFDLQTAALWL+PVI+  G AAG+  Y KH+ + NV IMALNL+RGVPLT
Sbjct: 70  EFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGI-VYQKHRLRKNVDIMALNLIRGVPLT 129

Query: 162 PKEKQTMLDLLSPP 176
           PKE+ T+LD+L PP
Sbjct: 130 PKERVTILDVLIPP 142

The following BLAST results are available for this feature:

BLAST of Lag0003009 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904619.1	2.0e-66	93.66	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_004149299.1	7.5e-66	91.72	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_008452301.1	1.3e-65	91.03	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_022953979.1	9.1e-64	90.78	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]
XP_022152937.1	9.1e-64	89.44	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]

BLAST of Lag0003009 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	8.3e-60	82.22	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	8.3e-60	82.22	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	1.2e-50	72.39	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	4.8e-15	34.65	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	1.2e-13	35.38	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Lag0003009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L351	3.6e-66	91.72	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A1S4DZT6	6.2e-66	91.03	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	6.2e-66	91.03	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1JTI4	4.4e-64	90.78	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]
A0A6J1GPV4	4.4e-64	90.78	Cytochrome c-type biogenesis protein OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]

BLAST of Lag0003009 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	8.6e-52	72.39	cytochrome c biogenesis protein family	[more]
AT1G15220.2	8.6e-52	72.39	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 44..169 e-value: 1.3E-30 score: 105.6
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 34..114 e-value: 4.5E-20 score: 73.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..198
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 41..180
None	No IPR available	CDD	cd16378	CcmH_N	coord: 46..111 e-value: 3.95011E-25 score: 91.051

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003009.1	Lag0003009.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity