Lag0003008 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003008
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein CURVATURE THYLAKOID 1C, chloroplastic
Location	chr4: 47357181 .. 47361782 (+)
RNA-Seq Expression	Lag0003008
Synteny	Lag0003008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTGTTGCTTCTCTTCCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCCCAGAAGTTCACTGTTTTTCCCATTGCAAGTAAGTCTATCACTCGAATCGAGATCCTAATTAGTTTAATTTGTCTTCCATCTGAACTTCCTGCTTTGAAATTGATATCTGTTCGACCGTGTTTATTGTTGTGCTGTTGTTTGAATTTTGAACTTAATGCTTGGCACATTATTCGTGGGTGGAAGGGATATTTCGATGCGACGCTGAAAGCAACTTCGAGTTGGGATTTAGGTTTTTATGACTAGTGTAGTTTATTTTAGGGCTAGAAAATCTTTTAGTCTTTAGTACTTCCATATATGGTTAGCACAGTTTTTAGATGGAAGATGGAAGAAGGTATAAGTTTATAGTTTTGGAACTTCAGAATCTTCAAATTTTGTTGATATTGAAGTATTGAACATCAGTATGAATGTCGATCCTGGTAGATCATCTTCATCAACTCACAGAAACTTCACATTCCTTGCATCATTTTTTCATAGAAACGAGCCTTGCCACTGCCTTCTAGACTTGAGTTCAATTTTCAGGATGATAGGAATCATCTTCGTATTTTCTATTCATTAAACAAAATGGGTGGCAATGCACCTCACGTGAAGTAGCCTAGACAAGTTGAGAGTGCTAGCTTCTTTCCATACACTAACATTCACAATATACGATACAATTCACTCGCAGAATCTGAGTGGTTCACAATTTTTTCTGGTCTATTTACAGCAGACTATTGTATATCAGTAGGAGTAGGAGTTTCTTGTCACTGCCTCTGGAGGTCGGCACCCCTTAGGTGGGTTCAACTCTGTAAATTGTATGAACCACCGTAGATTGGCTTAGTGGTATAAAGGCGAATGTAAATAATAAAGGGTTTATAGGAAATGAGTTCAAATCATGGTGGCCACTTATCTAGGATTTAATATTCCACGAGTTTTCTTGGCAACAAAATGTAGTAAGGTTAAACAATTGTCTTATCGAATAGTTGAATTCTCTACAAGTTGGCATGGACACTTATGGATATCAAAGAAAAATAGTACATGTAATATGTTTTCTGTATACGAGATTTTCAAAGTTATACAAAAACTCCAAAATATAATTCTCTGTTTAATTGTGTGCAACTAATTTGAAGTTCTCCATAACTCAGTTCATCATACTTCTTGTTAGTAAATATAAATAATTTCTCGAAATTGCAGAGGGACGTTCTGCAAATGTTGTTGTAAAGGCTATTGGAGACAGCTCTGAGGCTTCTACTTCCCTTGATATTATTAAGTCTGTTCGAAATGTTGTAAGCTCTTTATTTCTTTGTCCTTTATGTAAGCCTCTTTTTATACATTGGACTTTGGAGCATATCTTGATTGGGGAGAAAACTAATGAAGACTTCTTGTCTTCTACAGTTTTAAATTCTACCTTTCATCATGGGTGTTTAACGATTCCCTTGTTTGCAATTTACAACTGTTATTTGCTTTTCATAGGGTGATTCTTTCCTCCAAAGTTATTTGCGGTTCTCTTTTGTTACAATTAGCAAATTTCTCATTCTGTGGATGGCAAGTTTTTACCTTAATCTTATAGGTATTTGTATTTTTCTGGTTAACTTGGGACAGTGGGATCAACCTGAAGATCGACTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTGTATGGACAGCATCAAATCTTGTTACGGTAATCTAAAAACTATGACCCGTTTGGAACTAGACAAATGAGGAGACAAGATAATCACACAGCACGGGCATGTGCGCGTGTGGTTTTCAAGTGTGTCAGAGATTCCTCGTGCTTTGTTCCTTTCACCTTCAACACATGATTTGTTCATTCTCATTTGCTTGTAGGCTATTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAATACTGGTTTCCTGGGTAAGTAACAAGATATGTCAAGAACTTCTCTACTGCCTTGCCATGGTTCTCTCTCCTTGCAAGTTCCATTCCATTACTGACCAATGTTTTCGTTTTCCCCTATCAACTCCAGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACAGGTAAGACAAAATCCATTAGATATTTCATTTGGTTCACATGTGAAGTCTTCTCGGTCCTGTATTTTCAACATTTTTGTCATCTTTAACTCGTTATCGTTAATTTTATGCAACCTGGTTGTGAAATGACATTTCATTGTAGCAAACAACCTTGAACTGGCTTTCTGAATCTGTCACTGCAGGGAAGAGCTTTTGCAGATAATCAACAAGTCAATAGTAGATGTATTGGGACAGTAAATTTCCTTCGTGTAAAAGGCCCGATTAGGTCCAATCTTCATTACATTCGTTCTTTTTTACAGAGTGGTGAGTAAAGAGGGTTGGCCACTGGGTTGCTTTCTTAATTGTATTCAACATTCAAGTGTGAATTTTCAACCAAAATTGGTGTTTGATTCATCAATGCATTCCAATCCCAAATCTTCTATGATCTATCCTGTAGTCTATACCTATATCAGTTTATGTTTCGAACCTTCATTTTTTCGTAGTTAGACAATCTATTCATATATCAGGAATTGCTTTTGGAAAGATTAAAAGCAATTGTTAGAGAATCTTAGGCCCCGTTTGGGTTGCAGATAAATTTTAGAGAAAATAAAAAATGCTTCTAATTTATTTATTTTTTTATTTAAACTAAAATCTCACAATTTTTTTTATATAATTGATATATATTTTTTTCAATTTACTTGAACTAAATAAAATATATGACTTGATTTTCCAAGTTTAAACCTGAAATTTACCAACACTTAATTTACTTCTTATGGTAGTTGATTTTCTTGAAAGCACGTATGACATAAATTATTTATAATAACCAAACCAAGCCAAATGTATCAATTCGATTCTCGGATATTAGTGAAGTTTTATGTCACTTGAGCTATGCTCATGTTGACTCTTGTTAAATCAAAAAAATATCTACTTTGTTCATTTCTGTTAAATTACAACCATTTAATATTAATTTACCAAACACCAAACAACTTGTTTAGGTTTACAATTAAAATGTACTAAACATTAATTTACTACCTACAATTATTTTAGAAGTGACAACCGTCATTGTAGTAAGTATAGTTCAGCGTTAAAGGTTTGAATTCTTCCATTTTCAAATATTATAATGAAATGTATCGTATGCAAGGTATCAAATTTCCATCGACATACCGACATTTCCATGGAAATGTCGGTATGTCGACAGTGTCGACATTTCCGTGGGGCGAAGTTTCGATCTTCCCCCCATGTCGACGACATGTCGACATTTCCGTCCAGTTTCTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTAAAAAAAAGCCAAGCTCTTGAATCACTTGTTTGTCAAGCTTTCTTTTATTTTTTTTTTTTATGTATTTTAGCTTTTTATAGTCTATGTTTTTTTTTTTACATTTTTATTGTTTTATTATTTTTATCACCTATAAATACCCCCACTTCATCTCAATTTCTTCACACTTCAATTTTTCAAACTCTCTCCCAAACTCTCTCAATTCTCTCAAATTCTCTCAATTTTTCCAAATTCGCTTAAATCTCCTAATTCTCCAAATTATCTCACTTGTCTCAATTACTAATTTCTTTCTTAAGTTAAGAAGTTTAATTTTAAAAGGTTACATCTTTCTTTACGTATTAGTTTATTAGTGTTATTTTTTTACTTTATTAGTGTTATTTTCTTTACATATTAGTTTATCAATTATTTAATGTCCACGATCATCTTTTTGGTATTAGTCATTGTAAAATTTTATATTCATAAATCCAAAGTTATTTTTCATCTATCAATATTTCATATCTATTTTAATTTTCAAATTAAAGTCTCATTTAATAATTTACAAATCTTTCTGCACGTATCGACATTTTAATCAACATTTTCATCCAAATATTGTTATACTTTTTAGATATGATGATAAAAAATTGTCAATTATATCCTAATTAAGCCACAAACAAAATTTCATGGACTAATTCAAACAATTTCCATCAATTTCTATGATTTCCGTAAATCTTCCCGGAATTTCCATCGACATCGATATTTCCATAAAATCAGGACCTCGACATTTCCATCGACATCGACATTTTAAACCTTGATCGTATGGACTTTAGGATGACAAAAAAACCATTGAACCGAATTGATCGGTTTGGCTTGGTTTGGTTATTATAGCAAAATGTGGACGCTTCGATTCTTATTGATAAACGAACCGAACTGAACCGAAGAAACTTTTAATATACAATAATACAAGGAAATAAAAAGACCTAGATGCCCCTTCTCGTCCCTAATTTATTTTCGTTCCGGCGGCAGATCAGTACAGAAAATCACCTCATTCGTCTCTCTCGCGCCGATCACTCTCCTCTGGTTCTCCATCGTTCGTTGTCACGAAAGACTGATGCTGATTCTCTGATTCACACCAGTTCTTCTTCTCTCACAGTCGCCACTCACGCCAGCGAGCTCCCGGCAGCAACGGAACAATTACGTCTCTCTACAGGTCGCCTATCTCCGGCGTGA

mRNA sequence

ATGGCTTCCATTGTTGCTTCTCTTCCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCCCAGAAGTTCACTGTTTTTCCCATTGCAAAGGGACGTTCTGCAAATGTTGTTGTAAAGGCTATTGGAGACAGCTCTGAGGCTTCTACTTCCCTTGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAACCTGAAGATCGACTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTGTATGGACAGCATCAAATCTTGTTACGGCTATTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAATACTGGTTTCCTGGGTAAGTAACAAGATATGTCAAGAACTTCTCTACTGCCTTGCCATGGTTCTCTCTCCTTGCAAGTTCCATTCCATTACTGACCAATGTTTTCGTTTTCCCCTATCAACTCCAGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACAGGGAAGAGCTTTTGCAGATAATCAACAAGTCAATAGTAGATGTATTGGGACAATCAGTACAGAAAATCACCTCATTCGTCTCTCTCGCGCCGATCACTCTCCTCTGGTTCTCCATCGTTCGTTGTCACGAAAGACTGATGCTGATTCTCTGATTCACACCAGTTCTTCTTCTCTCACAGTCGCCACTCACGCCAGCGAGCTCCCGGCAGCAACGGAACAATTACGTCTCTCTACAGGTCGCCTATCTCCGGCGTGA

Coding sequence (CDS)

ATGGCTTCCATTGTTGCTTCTCTTCCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCCCAGAAGTTCACTGTTTTTCCCATTGCAAAGGGACGTTCTGCAAATGTTGTTGTAAAGGCTATTGGAGACAGCTCTGAGGCTTCTACTTCCCTTGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAACCTGAAGATCGACTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTGTATGGACAGCATCAAATCTTGTTACGGCTATTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAATACTGGTTTCCTGGGTAAGTAACAAGATATGTCAAGAACTTCTCTACTGCCTTGCCATGGTTCTCTCTCCTTGCAAGTTCCATTCCATTACTGACCAATGTTTTCGTTTTCCCCTATCAACTCCAGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACAGGGAAGAGCTTTTGCAGATAATCAACAAGTCAATAGTAGATGTATTGGGACAATCAGTACAGAAAATCACCTCATTCGTCTCTCTCGCGCCGATCACTCTCCTCTGGTTCTCCATCGTTCGTTGTCACGAAAGACTGATGCTGATTCTCTGATTCACACCAGTTCTTCTTCTCTCACAGTCGCCACTCACGCCAGCGAGCTCCCGGCAGCAACGGAACAATTACGTCTCTCTACAGGTCGCCTATCTCCGGCGTGA

Protein sequence

MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSWVSNKICQELLYCLAMVLSPCKFHSITDQCFRFPLSTPVVRVSLPLVQTKQGRAFADNQQVNSRCIGTISTENHLIRLSRADHSPLVLHRSLSRKTDADSLIHTSSSSLTVATHASELPAATEQLRLSTGRLSPA

Homology

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BLAST of Lag0003008 vs. NCBI nr
Match: XP_038897597.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-46
Identity = 101/115 (87.83%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASIVA+LPPPLLAP KSFTLLNTSQK T FPIA  RS NVVVKA+G SSE+STSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTLLNTSQKLTAFPIANRRSGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SVRNVWDQPEDRL LFGLGFAAVA VWTA+NLVTAIDKLPLLPGVLEFIG LVSW
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATVWTATNLVTAIDKLPLLPGVLEFIGALVSW 115

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BLAST of Lag0003008 vs. NCBI nr
Match: XP_023000405.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 6.3e-46
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASI A+LPPPLLAPGKSF  L T QK TVFPIAKGRSAN +VKAIGDSSE+STS+DIIK
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFPIAKGRSANGIVKAIGDSSESSTSIDIIK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SVRNVWDQPEDRLGLFGLGFAAV   WTA+NLVTA+DKLPLLPGVLEFIGILVSW
Sbjct: 61  SVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 115

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BLAST of Lag0003008 vs. NCBI nr
Match: KAG6593469.1 (Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 4.1e-45
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQ-KFTVFPIAKGRSANVVVKAIGDSSEASTSLDII 60
           MASI A+LPPPLLAPGKSFT L T Q K TVFPIAKGRSAN +VKAIGDSSE+STS+DII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           KSVRNVWDQPEDRLGLFGLGFAAV   WTA+NLVTA+DKLPLLPGVLEFIGILVSW
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 116

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BLAST of Lag0003008 vs. NCBI nr
Match: XP_022964632.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_022964633.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_023515295.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023515296.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 4.1e-45
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQ-KFTVFPIAKGRSANVVVKAIGDSSEASTSLDII 60
           MASI A+LPPPLLAPGKSFT L T Q K TVFPIAKGRSAN +VKAIGDSSE+STS+DII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           KSVRNVWDQPEDRLGLFGLGFAAV   WTA+NLVTA+DKLPLLPGVLEFIGILVSW
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 116

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BLAST of Lag0003008 vs. NCBI nr
Match: XP_022144822.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 4.1e-45
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASIVASLPPPLLAPGKSFTLLNTSQK TVFPIAK RSA VVVKA GDSS+ S+SL IIK
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSD-SSSLSIIK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SV+N+WDQPEDRLGLFGLGFAAVAA+WTA+N VTAIDKLPLLPG+LEFIG LVSW
Sbjct: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 114

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BLAST of Lag0003008 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKG-------------RSANVVVKAIG 60
           MASI A+LP PLL   +   L  TS +   F + +G              S +++VKA G
Sbjct: 1   MASISATLPSPLLLTQRKSNL--TSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASG 60

Query: 61  DSSEASTSLDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLE 115
           +SS++ST LD++ +++NVWD+ EDRLGL GLGFA + A+W + NL+TAIDKLP++    E
Sbjct: 61  ESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFE 120

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BLAST of Lag0003008 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-09
Identity = 31/86 (36.05%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 37  RSANVVVKAIGDSSEASTS--LDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVT 96
           R+   V +A   ++EA T+   +I+K+ +  W++ +D+  +  L FA V A+W ++ +++
Sbjct: 63  RATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMIS 122

Query: 97  AIDKLPLLPGVLEFIGI-LVSWVSNK 120
           AID+LPL+PGVLE +GI    W + K
Sbjct: 123 AIDRLPLVPGVLELVGIGYTGWFTYK 148

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BLAST of Lag0003008 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.6e-05
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 49  SSEASTSLD---IIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGV 108
           SSE ++S+D   +I  ++  WD  E++  +   G  A+ AVW +S +V AI+ +PLLP V
Sbjct: 64  SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKV 123

Query: 109 LEFIGI 112
           +E +G+
Sbjct: 124 MELVGL 129

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BLAST of Lag0003008 vs. ExPASy TrEMBL
Match: A0A6J1KFS9 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494666 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASI A+LPPPLLAPGKSF  L T QK TVFPIAKGRSAN +VKAIGDSSE+STS+DIIK
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFPIAKGRSANGIVKAIGDSSESSTSIDIIK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SVRNVWDQPEDRLGLFGLGFAAV   WTA+NLVTA+DKLPLLPGVLEFIGILVSW
Sbjct: 61  SVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 115

[Close]

BLAST of Lag0003008 vs. ExPASy TrEMBL
Match: A0A6J1HLG0 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464586 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQ-KFTVFPIAKGRSANVVVKAIGDSSEASTSLDII 60
           MASI A+LPPPLLAPGKSFT L T Q K TVFPIAKGRSAN +VKAIGDSSE+STS+DII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           KSVRNVWDQPEDRLGLFGLGFAAV   WTA+NLVTA+DKLPLLPGVLEFIGILVSW
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 116

[Close]

BLAST of Lag0003008 vs. ExPASy TrEMBL
Match: A0A6J1CUT1 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014410 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASIVASLPPPLLAPGKSFTLLNTSQK TVFPIAK RSA VVVKA GDSS+ S+SL IIK
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSD-SSSLSIIK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SV+N+WDQPEDRLGLFGLGFAAVAA+WTA+N VTAIDKLPLLPG+LEFIG LVSW
Sbjct: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 114

[Close]

BLAST of Lag0003008 vs. ExPASy TrEMBL
Match: A0A0A0KC66 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.8e-44
Identity = 95/115 (82.61%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASIVA+LPPPLLAP KSFT+LN SQK +VF  A GRS NVVVKA+G SSE+STSLDI+K
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVFSTANGRSGNVVVKAVGGSSESSTSLDIVK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SVRNVWDQPEDRL LFGLGFAAVA  WTA+N+VTAIDKLPLLPGVLEFIG LVSW
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSW 115

[Close]

BLAST of Lag0003008 vs. ExPASy TrEMBL
Match: A0A5D3BWY3 (Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002150 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 95/115 (82.61%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKGRSANVVVKAIGDSSEASTSLDIIK 60
           MASIVA+LPPPLLAP KSFT+LN SQK +V   AKGR  NVVVKA+G SSE+STSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLEFIGILVSW 116
           SVRNVWDQPEDR  LFGLGFAAVA  WTA+NLVTAIDKLPLLPGVLEFIG LVSW
Sbjct: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSW 115

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BLAST of Lag0003008 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-22
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKG-------------RSANVVVKAIG 60
           MASI A+LP PLL   +   L  TS +   F + +G              S +++VKA G
Sbjct: 1   MASISATLPSPLLLTQRKSNL--TSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASG 60

Query: 61  DSSEASTSLDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLE 115
           +SS++ST LD++ +++NVWD+ EDRLGL GLGFA + A+W + NL+TAIDKLP++    E
Sbjct: 61  ESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFE 120

[Close]

BLAST of Lag0003008 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-20
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKFTVFPIAKG-------------RSANVVVKAIG 60
           MASI A+LP PLL   +   L  TS +   F + +G              S +++VKA G
Sbjct: 1   MASISATLPSPLLLTQRKSNL--TSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASG 60

Query: 61  DSSEASTSLDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGVLE 115
           +SS++ST LD++ +++N WD+ EDRLGL GLGFA + A+W + NL+TAIDKLP++    E
Sbjct: 61  ESSDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFE 120

[Close]

BLAST of Lag0003008 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 31/86 (36.05%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 37  RSANVVVKAIGDSSEASTS--LDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVT 96
           R+   V +A   ++EA T+   +I+K+ +  W++ +D+  +  L FA V A+W ++ +++
Sbjct: 63  RATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMIS 122

Query: 97  AIDKLPLLPGVLEFIGI-LVSWVSNK 120
           AID+LPL+PGVLE +GI    W + K
Sbjct: 123 AIDRLPLVPGVLELVGIGYTGWFTYK 148

[Close]

BLAST of Lag0003008 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 31/86 (36.05%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 37  RSANVVVKAIGDSSEASTS--LDIIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVT 96
           R+   V +A   ++EA T+   +I+K+ +  W++ +D+  +  L FA V A+W ++ +++
Sbjct: 63  RATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMIS 122

Query: 97  AIDKLPLLPGVLEFIGI-LVSWVSNK 120
           AID+LPL+PGVLE +GI    W + K
Sbjct: 123 AIDRLPLVPGVLELVGIGYTGWFTYK 148

[Close]

BLAST of Lag0003008 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-06
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 49  SSEASTSLD---IIKSVRNVWDQPEDRLGLFGLGFAAVAAVWTASNLVTAIDKLPLLPGV 108
           SSE ++S+D   +I  ++  WD  E++  +   G  A+ AVW +S +V AI+ +PLLP V
Sbjct: 64  SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKV 123

Query: 109 LEFIGI 112
           +E +G+
Sbjct: 124 MELVGL 129

The following BLAST results are available for this feature:

BLAST of Lag0003008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897597.1	2.8e-46	87.83	protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida]	[more]
XP_023000405.1	6.3e-46	86.09	protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1...	[more]
KAG6593469.1	4.1e-45	86.21	Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964632.1	4.1e-45	86.21	protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_022964633...	[more]
XP_022144822.1	4.1e-45	86.96	protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia]	[more]

BLAST of Lag0003008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M812	5.6e-21	44.88	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LCA1	2.9e-09	36.05	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04616	9.6e-05	37.88	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lag0003008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFS9	3.1e-46	86.09	protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HLG0	2.0e-45	86.21	protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CUT1	2.0e-45	86.96	protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0KC66	3.8e-44	82.61	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 S...	[more]
A0A5D3BWY3	1.9e-43	82.61	Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Lag0003008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52220.1	4.0e-22	44.88	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	2.9e-20	44.09	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G46820.1	2.1e-10	36.05	photosystem I P subunit	[more]
AT2G46820.2	2.1e-10	36.05	photosystem I P subunit	[more]
AT4G01150.1	6.8e-06	37.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 61..115 e-value: 5.6E-13 score: 48.6
None	No IPR available	PANTHER	PTHR33222:SF3	PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTIC	coord: 1..117
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003008.1	Lag0003008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid