Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTGCACAAGCTAAAGGTAACCTAAGTTAAACTCTTTTTTTTTTTAATATATTGTGTATTTTATATATTTTTTATATTATTTTTTAAATGAAATAATATCATCCATTTTCAATAGTTTAACTAAATTGGAAGGGTAAAGGAATCATGTGAGAGAGACATCTCTCATAGAATAAACAACTAGCTTGAAACAAGTGAGTTTTTTTTTTTTTTTTTTGAAAATTGAAACAAGTGAGTTTGTTATTTTATTTCATTAATTTATACTTTTATCAATATTCATTTTTTTTATTCTCAGATATGTTCATGCAACCTATTTTTTTTACGAAGTGACCCAATATTTGATTTTGAATTATTGGATTCATAATTAGAAAAACAAGTTGTGTTTTTTGTTTTTACCATATTTTAAAAAAGGGGTTTGGTGGTAGATTGAAGAGATATAATAAATTATATAAAAAAAAAAAAAAAAAAAAAAATTGTATGAGCTCTCATATGTGTATTGAAAAGATGGTATAATAAATTAAAAGAAAAATAGAGAGAATGGGGAGAGATGGTGAGGTGTGTATTGAAAAGATACAATAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGAAGCCTTATCATGGAAAAGTGTGTTTAACAAAAAAAAAATCTAATAAAAAGTAAAATCTGTTAGATAGATTTTGATGATACTTTGTTGAGATTTTGACATTTAATAAAAGTAAATGAAGTGACACATGTTAAAAGAATAGTGCTGGTAAGCAGGAAATTTCTGCTCGTCGTTATGCAAGAAGTTTTATCCAAAATATATTTATACCCAACCAGATCTACCTAACGATTAAAATGGTTAAAACCACTTTGAAAGTCTTCAAATTCAATACGCGAAATAGGTTCTAAGCCATGTTTATATTATTTCTAGGAGTGATTTCTATAATTTTGTTAATTCAACCTTCCAAATGTTGGTTGTTAGGACTTTGACTTTAATTTCATGAAAATTATTAAGTTTTTTAAAATTTGTATTTTTCTTTTATTTATTTTCTTTTTTCTTTTGCTAATTACATCAAAGGGTGAATGTAATAAAAGCTCAATGTATGGTCTTGGTATTTACAAGACCAGGGTATCCAACAACGCTCTTCAATTCAAATGACTTTGGAGGTTTTTCCAAGAAGACAATGTCCTGTGGAAGTGTCTTATCCTGGCGAAATTCTAGCCCCAGAACTGGGAGGTTTTTCCTTCACAAGCCAAATTCTCTAGCTCGAAGTCCCCGAGGCTCTCCAATGCAAAGCAAGGGAAAAAATTTATAGATAATTCTTCTTGGGAGCTTAGGGATGGCAGCAAAATTCGCTTCTGGCATGATAAGTGGTCAAATTCAGGGCCTTTGCACCTATCAATCCCTCGCTTTTATGCCCTTTCTAATGTCAACTCCTTAAAGGTGGCAGAAGCATGGAACCATTCCAACAATTCTTGGAATTTCTTTCCGAGAAGATCACTGTTGGCCAGAGAAACTTCAACTTGGACAGCTTTTTCAACTTGCCTTCCCAGGCCTTCAAATGCTCGTGTTCCAGATCTGTTGAGGTGGAATCATCACTCCAATGGAGTTTTTTCCATTGCATCTGCTCGATTATTCTTTTGGTTCGAAGATCAGCCTCCATCTGCTTCTTTGAATCCCAAAGCCCTTGTCAATCTTTGGAGCGCAGTTATTCCTAGGAAGGTAAAATTTTTTATTTGGTCTATCATGCACCGGAAGATCAACACAGCAGATTGCAATCAATTTTCACCAACATGGCCTTAAGTCCAAGCTGTTGTGTGTTATGCCACAATCAGTCGGAGACACTAGACCACTAATTCGTTCACTGCGCTTTTATCTCCAATTTATGGCATCAGCTTTATTCGCAGGTGGGGATCCATCTCCCGCTAAACTTTCAGCCAAACGGTCTCTGTGAAGAAGCTTTCTCGACTAAGGGCTCTTCTCAAAAATCCATTCTCTTTCAAGCTCTCTTTGCCTCTACTGTTTGGACCATCTGGCAGGAGCGCAACACTAGGATTTTCAGCAACTACTCCAACTCAATGGCTCATATTCGTGATCAGATTATCGCCTCCGCCGCAACCTGGTCCTCCTCTTCAAAGCTCTTCTCGAATTATGACGTTTCTTCTATAGCTTTGAATTGGAAAGTTTTTATGTAACTTCTCTCTGTATGCCTCTTACATACGGTTTTAATAAAGTATCCTTTTCCAAAAAAAAATAAAAGCTCAATGTAAGATAAAAGTTACAAAGCTTATCAAAATTAGTCTAGAGTGAAATTTTACATATTTTATCGGATCTCTTTATCTAGTTTGATTGTGGGCAATTTTGACAAGCCAGCATAGGCAAAATTCAAATACGGAACTCTTAAACATTTCTCACGCAAGTATGATATATAGATATAAAGCAACCCTTTTTGACATATTGATAGGTACGTAAACAGAAATTTTGAAACTATATTATATATCTTTGATACATGACTTTAACTTAAATTTGGAATAAGGCTTTTTAGCCAAATGGTTTTGTTTCCCCTTTGACATTCATTTATTCATAGTATTTTAAAAGCCAAATTCTAACTTGGTCGGTTCCCTCTCCCTTTGATGCATCTAAGTGTATGTGCATACTCGAGAGCACGAGTTCACACAGCTTTTCACTTTCTTCGCAGCTGCCAAGTTCATGGAAACAAAAGAAAAAAAAAATAATCTATCAGAACTAGATACAGAAAGGAGAGAGAAGATGCAAAATAAAAAACGAAAAAAAAATAAATAAATATATGTTGTTTTAGTCCCTACCATGAGAAAAAAAAATTCACTTTAGTCTTTAATTATGTATAACAAAAAACTCAAATTTAGTCTCTTACGTCTTTAATTAACCTTATATTTAATAATAGCACACGCTTCTGATGTCGTTTTAAATTGGAAGACCTTTATCTAACCGGTATGTTTCTCACATACGTCGCTCAATAAAGTATCATCTTTTCTAAAAAAATATATATATATTTAGTGATAGGGACCTGAGTCTTTGATAGTGATGAACTTGGTGCAGAGAAAAGTGGCACAACCAAGCTTGCAGAAGTAGTTACGAGTGTCGCTATGGTTCAAGTCCATTGGGGACGACGCAGCAGCAAAGTAACATTTTTCTAACGCAGTTTGAAGCGCAGACTGCGGTGTCTATGGGCGTATAG
mRNA sequence
ATGATTTTGCACAAGCTAAAGCCCCAGAACTGGGAGGTTTTTCCTTCACAAGCCAAATTCTCTAGCTCGAAGTCCCCGAGGCTCTCCAATGCAAAGCAAGGGAAAAAATTTATAGATAATTCTTCTTGGGAGCTTAGGGATGGCAGCAAAATTCGCTTCTGGCATGATAAGTGGTCAAATTCAGGGCCTTTGCACCTATCAATCCCTCGCTTTTATGCCCTTTCTAATGTCAACTCCTTAAAGGTGGCAGAAGCATGGAACCATTCCAACAATTCTTGGAATTTCTTTCCGAGAAGATCACTGTTGGCCAGAGAAACTTCAACTTGGACAGCTTTTTCAACTTGCCTTCCCAGGCCTTCAAATGCTCGTGTTCCAGATCTGTTGAGGTGGAATCATCACTCCAATGGAGTTTTTTCCATTGCATCTGCTCGATTATTCTTTTGGTTCGAAGATCAGCCTCCATCTGCTTCTTTGAATCCCAAAGCCCTTGTCAATCTTTGGAGCGCAGTTATTCCTAGGAAGGTGGGGATCCATCTCCCGCTAAACTTTCAGCCAAACGGTCTCTGTGAAGAAGCTTTCTCGACTAAGGGCTCTTCTCAAAAATCCATTCTCTTTCAAGCTCTCTTTGCCTCTACTGTTTGGACCATCTGGCAGGAGCGCAACACTAGGATTTTCAGCAACTACTCCAACTCAATGGCTCATATTCGTGATCAGATTATCGCCTCCGCCGCAACCTGGTCCTCCTCTTCAAAGCTCTTCTCGAATTATGACGTTTCTTCTATAGCTTTGAATTGGAAAGTTTTTATAGAAAAGTGGCACAACCAAGCTTGCAGAAGTAGTTACGAGTGTCGCTATGGTTCAAGTCCATTGGGGACGACGCAGCAGCAAAGTAACATTTTTCTAACGCAGTTTGAAGCGCAGACTGCGGTGTCTATGGGCGTATAG
Coding sequence (CDS)
ATGATTTTGCACAAGCTAAAGCCCCAGAACTGGGAGGTTTTTCCTTCACAAGCCAAATTCTCTAGCTCGAAGTCCCCGAGGCTCTCCAATGCAAAGCAAGGGAAAAAATTTATAGATAATTCTTCTTGGGAGCTTAGGGATGGCAGCAAAATTCGCTTCTGGCATGATAAGTGGTCAAATTCAGGGCCTTTGCACCTATCAATCCCTCGCTTTTATGCCCTTTCTAATGTCAACTCCTTAAAGGTGGCAGAAGCATGGAACCATTCCAACAATTCTTGGAATTTCTTTCCGAGAAGATCACTGTTGGCCAGAGAAACTTCAACTTGGACAGCTTTTTCAACTTGCCTTCCCAGGCCTTCAAATGCTCGTGTTCCAGATCTGTTGAGGTGGAATCATCACTCCAATGGAGTTTTTTCCATTGCATCTGCTCGATTATTCTTTTGGTTCGAAGATCAGCCTCCATCTGCTTCTTTGAATCCCAAAGCCCTTGTCAATCTTTGGAGCGCAGTTATTCCTAGGAAGGTGGGGATCCATCTCCCGCTAAACTTTCAGCCAAACGGTCTCTGTGAAGAAGCTTTCTCGACTAAGGGCTCTTCTCAAAAATCCATTCTCTTTCAAGCTCTCTTTGCCTCTACTGTTTGGACCATCTGGCAGGAGCGCAACACTAGGATTTTCAGCAACTACTCCAACTCAATGGCTCATATTCGTGATCAGATTATCGCCTCCGCCGCAACCTGGTCCTCCTCTTCAAAGCTCTTCTCGAATTATGACGTTTCTTCTATAGCTTTGAATTGGAAAGTTTTTATAGAAAAGTGGCACAACCAAGCTTGCAGAAGTAGTTACGAGTGTCGCTATGGTTCAAGTCCATTGGGGACGACGCAGCAGCAAAGTAACATTTTTCTAACGCAGTTTGAAGCGCAGACTGCGGTGTCTATGGGCGTATAG
Protein sequence
MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRKVGIHLPLNFQPNGLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKLFSNYDVSSIALNWKVFIEKWHNQACRSSYECRYGSSPLGTTQQQSNIFLTQFEAQTAVSMGV
Homology
BLAST of Lag0002968 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 1.3e-27
Identity = 93/332 (28.01%), Postives = 127/332 (38.25%), Query Frame = 0
Query: 1 MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
+I+ K + FPS+ K+SS+ SP + F N W++ DG I FW D W+
Sbjct: 613 LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 672
Query: 61 SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
+ PL L++PR +ALS V + WN S WN R L E + W LP P
Sbjct: 673 NSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 732
Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
R P W +SN +F AS + P+ + +P LW P+K
Sbjct: 733 PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 792
Query: 181 ---------------------------------------VGIHLPL-------------- 240
+ IH P
Sbjct: 793 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 852
Query: 241 NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
N PN L + S +QK ++ A +W IW ERN RIF + +
Sbjct: 853 NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 912
BLAST of Lag0002968 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.4 bits (337), Expect = 1.7e-27
Identity = 94/331 (28.40%), Postives = 129/331 (38.97%), Query Frame = 0
Query: 1 MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
+I+ K + FPS KFSS+ SP + + F N SW++ DG I FW D W+
Sbjct: 815 LIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLDNWNG 874
Query: 61 SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
+ PL L++PR +ALS V E WN S+N W+ R L E + W LP P
Sbjct: 875 NAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPL 934
Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
R WN +SN +F AS + E A+ +P LW P+K
Sbjct: 935 PNRGHPKPLWNLNSNNIFDTASVKRAI-AEAPISPANFHPNLYKTLWKVEFPKKCKFFIW 994
Query: 181 ---------------------------------------VGIHLPLNFQ----------- 240
+ IH P + Q
Sbjct: 995 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNW 1054
Query: 241 ------PNGLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 270
L + S +QK ++ A+ +W IW ERN RIF + + +
Sbjct: 1055 NSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWED 1114
BLAST of Lag0002968 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.7 bits (335), Expect = 2.9e-27
Identity = 93/332 (28.01%), Postives = 126/332 (37.95%), Query Frame = 0
Query: 1 MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
+I+ K + FPS+ K+SS+ SP + F N W++ DG I FW D W+
Sbjct: 707 LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 766
Query: 61 SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
+ PL L +PR +ALS V + WN S WN R L E + W LP P
Sbjct: 767 NSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 826
Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
R P W +SN +F AS + P+ + +P LW P+K
Sbjct: 827 PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 886
Query: 181 ---------------------------------------VGIHLPL-------------- 240
+ IH P
Sbjct: 887 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 946
Query: 241 NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
N PN L + S +QK ++ A +W IW ERN RIF + +
Sbjct: 947 NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 1006
BLAST of Lag0002968 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.3 bits (334), Expect = 3.7e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0
Query: 15 PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
P + SS+ SP + K + SW DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568
Query: 75 SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
SN+ S V E W+ ++ WN PRR L RE TW + LPR N R WN
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628
Query: 135 NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
+ +++ASA+ + E P + K L +LW + IP+K +H LN N
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688
Query: 195 ------------------------------------------------------GLCEEA 254
LC +
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748
Query: 255 FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
G + K+I+ +T+WTIW RN IF++ +S + + I +WSS SK
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808
BLAST of Lag0002968 vs. NCBI nr
Match:
KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.3 bits (334), Expect = 3.7e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0
Query: 15 PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
P + SS+ SP + K + SW DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568
Query: 75 SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
SN+ S V E W+ ++ WN PRR L RE TW + LPR N R WN
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628
Query: 135 NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
+ +++ASA+ + E P + K L +LW + IP+K +H LN N
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688
Query: 195 ------------------------------------------------------GLCEEA 254
LC +
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748
Query: 255 FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
G + K+I+ +T+WTIW RN IF++ +S + + I +WSS SK
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808
BLAST of Lag0002968 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 6.2e-28
Identity = 93/332 (28.01%), Postives = 127/332 (38.25%), Query Frame = 0
Query: 1 MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
+I+ K + FPS+ K+SS+ SP + F N W++ DG I FW D W+
Sbjct: 613 LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 672
Query: 61 SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
+ PL L++PR +ALS V + WN S WN R L E + W LP P
Sbjct: 673 NSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 732
Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
R P W +SN +F AS + P+ + +P LW P+K
Sbjct: 733 PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 792
Query: 181 ---------------------------------------VGIHLPL-------------- 240
+ IH P
Sbjct: 793 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 852
Query: 241 NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
N PN L + S +QK ++ A +W IW ERN RIF + +
Sbjct: 853 NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 912
BLAST of Lag0002968 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 8.1e-28
Identity = 94/331 (28.40%), Postives = 129/331 (38.97%), Query Frame = 0
Query: 1 MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
+I+ K + FPS KFSS+ SP + + F N SW++ DG I FW D W+
Sbjct: 815 LIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLDNWNG 874
Query: 61 SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
+ PL L++PR +ALS V E WN S+N W+ R L E + W LP P
Sbjct: 875 NAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPL 934
Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
R WN +SN +F AS + E A+ +P LW P+K
Sbjct: 935 PNRGHPKPLWNLNSNNIFDTASVKRAI-AEAPISPANFHPNLYKTLWKVEFPKKCKFFIW 994
Query: 181 ---------------------------------------VGIHLPLNFQ----------- 240
+ IH P + Q
Sbjct: 995 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNW 1054
Query: 241 ------PNGLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 270
L + S +QK ++ A+ +W IW ERN RIF + + +
Sbjct: 1055 NSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWED 1114
BLAST of Lag0002968 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 1.4e-27
Identity = 93/332 (28.01%), Postives = 126/332 (37.95%), Query Frame = 0
Query: 1 MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
+I+ K + FPS+ K+SS+ SP + F N W++ DG I FW D W+
Sbjct: 707 LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 766
Query: 61 SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
+ PL L +PR +ALS V + WN S WN R L E + W LP P
Sbjct: 767 NSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 826
Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
R P W +SN +F AS + P+ + +P LW P+K
Sbjct: 827 PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 886
Query: 181 ---------------------------------------VGIHLPL-------------- 240
+ IH P
Sbjct: 887 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 946
Query: 241 NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
N PN L + S +QK ++ A +W IW ERN RIF + +
Sbjct: 947 NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 1006
BLAST of Lag0002968 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0
Query: 15 PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
P + SS+ SP + K + SW DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568
Query: 75 SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
SN+ S V E W+ ++ WN PRR L RE TW + LPR N R WN
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628
Query: 135 NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
+ +++ASA+ + E P + K L +LW + IP+K +H LN N
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688
Query: 195 ------------------------------------------------------GLCEEA 254
LC +
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748
Query: 255 FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
G + K+I+ +T+WTIW RN IF++ +S + + I +WSS SK
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808
BLAST of Lag0002968 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0
Query: 15 PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
P + SS+ SP + K + SW DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568
Query: 75 SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
SN+ S V E W+ ++ WN PRR L RE TW + LPR N R WN
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628
Query: 135 NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
+ +++ASA+ + E P + K L +LW + IP+K +H LN N
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688
Query: 195 ------------------------------------------------------GLCEEA 254
LC +
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748
Query: 255 FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
G + K+I+ +T+WTIW RN IF++ +S + + I +WSS SK
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0044556.1 | 1.3e-27 | 28.01 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0039950.1 | 1.7e-27 | 28.40 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
| KAA0041397.1 | 2.9e-27 | 28.01 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYK08190.1 | 3.7e-27 | 29.62 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0057507.1 | 3.7e-27 | 29.62 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TR15 | 6.2e-28 | 28.01 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7T9I7 | 8.1e-28 | 28.40 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7TIB8 | 1.4e-27 | 28.01 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7US62 | 1.8e-27 | 29.62 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3CA17 | 1.8e-27 | 29.62 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
