Lag0002968 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002968
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr4: 47077475 .. 47080690 (-)
RNA-Seq Expression	Lag0002968
Synteny	Lag0002968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTGCACAAGCTAAAGGTAACCTAAGTTAAACTCTTTTTTTTTTTAATATATTGTGTATTTTATATATTTTTTATATTATTTTTTAAATGAAATAATATCATCCATTTTCAATAGTTTAACTAAATTGGAAGGGTAAAGGAATCATGTGAGAGAGACATCTCTCATAGAATAAACAACTAGCTTGAAACAAGTGAGTTTTTTTTTTTTTTTTTTGAAAATTGAAACAAGTGAGTTTGTTATTTTATTTCATTAATTTATACTTTTATCAATATTCATTTTTTTTATTCTCAGATATGTTCATGCAACCTATTTTTTTTACGAAGTGACCCAATATTTGATTTTGAATTATTGGATTCATAATTAGAAAAACAAGTTGTGTTTTTTGTTTTTACCATATTTTAAAAAAGGGGTTTGGTGGTAGATTGAAGAGATATAATAAATTATATAAAAAAAAAAAAAAAAAAAAAAATTGTATGAGCTCTCATATGTGTATTGAAAAGATGGTATAATAAATTAAAAGAAAAATAGAGAGAATGGGGAGAGATGGTGAGGTGTGTATTGAAAAGATACAATAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGAAGCCTTATCATGGAAAAGTGTGTTTAACAAAAAAAAAATCTAATAAAAAGTAAAATCTGTTAGATAGATTTTGATGATACTTTGTTGAGATTTTGACATTTAATAAAAGTAAATGAAGTGACACATGTTAAAAGAATAGTGCTGGTAAGCAGGAAATTTCTGCTCGTCGTTATGCAAGAAGTTTTATCCAAAATATATTTATACCCAACCAGATCTACCTAACGATTAAAATGGTTAAAACCACTTTGAAAGTCTTCAAATTCAATACGCGAAATAGGTTCTAAGCCATGTTTATATTATTTCTAGGAGTGATTTCTATAATTTTGTTAATTCAACCTTCCAAATGTTGGTTGTTAGGACTTTGACTTTAATTTCATGAAAATTATTAAGTTTTTTAAAATTTGTATTTTTCTTTTATTTATTTTCTTTTTTCTTTTGCTAATTACATCAAAGGGTGAATGTAATAAAAGCTCAATGTATGGTCTTGGTATTTACAAGACCAGGGTATCCAACAACGCTCTTCAATTCAAATGACTTTGGAGGTTTTTCCAAGAAGACAATGTCCTGTGGAAGTGTCTTATCCTGGCGAAATTCTAGCCCCAGAACTGGGAGGTTTTTCCTTCACAAGCCAAATTCTCTAGCTCGAAGTCCCCGAGGCTCTCCAATGCAAAGCAAGGGAAAAAATTTATAGATAATTCTTCTTGGGAGCTTAGGGATGGCAGCAAAATTCGCTTCTGGCATGATAAGTGGTCAAATTCAGGGCCTTTGCACCTATCAATCCCTCGCTTTTATGCCCTTTCTAATGTCAACTCCTTAAAGGTGGCAGAAGCATGGAACCATTCCAACAATTCTTGGAATTTCTTTCCGAGAAGATCACTGTTGGCCAGAGAAACTTCAACTTGGACAGCTTTTTCAACTTGCCTTCCCAGGCCTTCAAATGCTCGTGTTCCAGATCTGTTGAGGTGGAATCATCACTCCAATGGAGTTTTTTCCATTGCATCTGCTCGATTATTCTTTTGGTTCGAAGATCAGCCTCCATCTGCTTCTTTGAATCCCAAAGCCCTTGTCAATCTTTGGAGCGCAGTTATTCCTAGGAAGGTAAAATTTTTTATTTGGTCTATCATGCACCGGAAGATCAACACAGCAGATTGCAATCAATTTTCACCAACATGGCCTTAAGTCCAAGCTGTTGTGTGTTATGCCACAATCAGTCGGAGACACTAGACCACTAATTCGTTCACTGCGCTTTTATCTCCAATTTATGGCATCAGCTTTATTCGCAGGTGGGGATCCATCTCCCGCTAAACTTTCAGCCAAACGGTCTCTGTGAAGAAGCTTTCTCGACTAAGGGCTCTTCTCAAAAATCCATTCTCTTTCAAGCTCTCTTTGCCTCTACTGTTTGGACCATCTGGCAGGAGCGCAACACTAGGATTTTCAGCAACTACTCCAACTCAATGGCTCATATTCGTGATCAGATTATCGCCTCCGCCGCAACCTGGTCCTCCTCTTCAAAGCTCTTCTCGAATTATGACGTTTCTTCTATAGCTTTGAATTGGAAAGTTTTTATGTAACTTCTCTCTGTATGCCTCTTACATACGGTTTTAATAAAGTATCCTTTTCCAAAAAAAAATAAAAGCTCAATGTAAGATAAAAGTTACAAAGCTTATCAAAATTAGTCTAGAGTGAAATTTTACATATTTTATCGGATCTCTTTATCTAGTTTGATTGTGGGCAATTTTGACAAGCCAGCATAGGCAAAATTCAAATACGGAACTCTTAAACATTTCTCACGCAAGTATGATATATAGATATAAAGCAACCCTTTTTGACATATTGATAGGTACGTAAACAGAAATTTTGAAACTATATTATATATCTTTGATACATGACTTTAACTTAAATTTGGAATAAGGCTTTTTAGCCAAATGGTTTTGTTTCCCCTTTGACATTCATTTATTCATAGTATTTTAAAAGCCAAATTCTAACTTGGTCGGTTCCCTCTCCCTTTGATGCATCTAAGTGTATGTGCATACTCGAGAGCACGAGTTCACACAGCTTTTCACTTTCTTCGCAGCTGCCAAGTTCATGGAAACAAAAGAAAAAAAAAATAATCTATCAGAACTAGATACAGAAAGGAGAGAGAAGATGCAAAATAAAAAACGAAAAAAAAATAAATAAATATATGTTGTTTTAGTCCCTACCATGAGAAAAAAAAATTCACTTTAGTCTTTAATTATGTATAACAAAAAACTCAAATTTAGTCTCTTACGTCTTTAATTAACCTTATATTTAATAATAGCACACGCTTCTGATGTCGTTTTAAATTGGAAGACCTTTATCTAACCGGTATGTTTCTCACATACGTCGCTCAATAAAGTATCATCTTTTCTAAAAAAATATATATATATTTAGTGATAGGGACCTGAGTCTTTGATAGTGATGAACTTGGTGCAGAGAAAAGTGGCACAACCAAGCTTGCAGAAGTAGTTACGAGTGTCGCTATGGTTCAAGTCCATTGGGGACGACGCAGCAGCAAAGTAACATTTTTCTAACGCAGTTTGAAGCGCAGACTGCGGTGTCTATGGGCGTATAG

mRNA sequence

ATGATTTTGCACAAGCTAAAGCCCCAGAACTGGGAGGTTTTTCCTTCACAAGCCAAATTCTCTAGCTCGAAGTCCCCGAGGCTCTCCAATGCAAAGCAAGGGAAAAAATTTATAGATAATTCTTCTTGGGAGCTTAGGGATGGCAGCAAAATTCGCTTCTGGCATGATAAGTGGTCAAATTCAGGGCCTTTGCACCTATCAATCCCTCGCTTTTATGCCCTTTCTAATGTCAACTCCTTAAAGGTGGCAGAAGCATGGAACCATTCCAACAATTCTTGGAATTTCTTTCCGAGAAGATCACTGTTGGCCAGAGAAACTTCAACTTGGACAGCTTTTTCAACTTGCCTTCCCAGGCCTTCAAATGCTCGTGTTCCAGATCTGTTGAGGTGGAATCATCACTCCAATGGAGTTTTTTCCATTGCATCTGCTCGATTATTCTTTTGGTTCGAAGATCAGCCTCCATCTGCTTCTTTGAATCCCAAAGCCCTTGTCAATCTTTGGAGCGCAGTTATTCCTAGGAAGGTGGGGATCCATCTCCCGCTAAACTTTCAGCCAAACGGTCTCTGTGAAGAAGCTTTCTCGACTAAGGGCTCTTCTCAAAAATCCATTCTCTTTCAAGCTCTCTTTGCCTCTACTGTTTGGACCATCTGGCAGGAGCGCAACACTAGGATTTTCAGCAACTACTCCAACTCAATGGCTCATATTCGTGATCAGATTATCGCCTCCGCCGCAACCTGGTCCTCCTCTTCAAAGCTCTTCTCGAATTATGACGTTTCTTCTATAGCTTTGAATTGGAAAGTTTTTATAGAAAAGTGGCACAACCAAGCTTGCAGAAGTAGTTACGAGTGTCGCTATGGTTCAAGTCCATTGGGGACGACGCAGCAGCAAAGTAACATTTTTCTAACGCAGTTTGAAGCGCAGACTGCGGTGTCTATGGGCGTATAG

Coding sequence (CDS)

ATGATTTTGCACAAGCTAAAGCCCCAGAACTGGGAGGTTTTTCCTTCACAAGCCAAATTCTCTAGCTCGAAGTCCCCGAGGCTCTCCAATGCAAAGCAAGGGAAAAAATTTATAGATAATTCTTCTTGGGAGCTTAGGGATGGCAGCAAAATTCGCTTCTGGCATGATAAGTGGTCAAATTCAGGGCCTTTGCACCTATCAATCCCTCGCTTTTATGCCCTTTCTAATGTCAACTCCTTAAAGGTGGCAGAAGCATGGAACCATTCCAACAATTCTTGGAATTTCTTTCCGAGAAGATCACTGTTGGCCAGAGAAACTTCAACTTGGACAGCTTTTTCAACTTGCCTTCCCAGGCCTTCAAATGCTCGTGTTCCAGATCTGTTGAGGTGGAATCATCACTCCAATGGAGTTTTTTCCATTGCATCTGCTCGATTATTCTTTTGGTTCGAAGATCAGCCTCCATCTGCTTCTTTGAATCCCAAAGCCCTTGTCAATCTTTGGAGCGCAGTTATTCCTAGGAAGGTGGGGATCCATCTCCCGCTAAACTTTCAGCCAAACGGTCTCTGTGAAGAAGCTTTCTCGACTAAGGGCTCTTCTCAAAAATCCATTCTCTTTCAAGCTCTCTTTGCCTCTACTGTTTGGACCATCTGGCAGGAGCGCAACACTAGGATTTTCAGCAACTACTCCAACTCAATGGCTCATATTCGTGATCAGATTATCGCCTCCGCCGCAACCTGGTCCTCCTCTTCAAAGCTCTTCTCGAATTATGACGTTTCTTCTATAGCTTTGAATTGGAAAGTTTTTATAGAAAAGTGGCACAACCAAGCTTGCAGAAGTAGTTACGAGTGTCGCTATGGTTCAAGTCCATTGGGGACGACGCAGCAGCAAAGTAACATTTTTCTAACGCAGTTTGAAGCGCAGACTGCGGTGTCTATGGGCGTATAG

Protein sequence

MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRKVGIHLPLNFQPNGLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKLFSNYDVSSIALNWKVFIEKWHNQACRSSYECRYGSSPLGTTQQQSNIFLTQFEAQTAVSMGV

Homology

[Close]

BLAST of Lag0002968 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-27
Identity = 93/332 (28.01%), Postives = 127/332 (38.25%), Query Frame = 0


Query: 1   MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
           +I+ K   +    FPS+ K+SS+ SP  +       F  N  W++ DG  I FW D W+ 
Sbjct: 613 LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 672

Query: 61  SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
           + PL L++PR +ALS      V + WN S   WN    R L   E + W      LP P 
Sbjct: 673 NSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 732

Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
             R P    W  +SN +F  AS +         P+ + +P     LW    P+K      
Sbjct: 733 PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 792

Query: 181 ---------------------------------------VGIHLPL-------------- 240
                                                  + IH P               
Sbjct: 793 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 852

Query: 241 NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
           N  PN    L +   S    +QK ++     A  +W IW ERN RIF         + + 
Sbjct: 853 NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 912

[Close]

BLAST of Lag0002968 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-27
Identity = 94/331 (28.40%), Postives = 129/331 (38.97%), Query Frame = 0


Query: 1    MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
            +I+ K   +    FPS  KFSS+ SP  +  +    F  N SW++ DG  I FW D W+ 
Sbjct: 815  LIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLDNWNG 874

Query: 61   SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
            + PL L++PR +ALS      V E WN S+N W+    R L   E + W      LP P 
Sbjct: 875  NAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPL 934

Query: 121  NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
              R      WN +SN +F  AS +     E     A+ +P     LW    P+K      
Sbjct: 935  PNRGHPKPLWNLNSNNIFDTASVKRAI-AEAPISPANFHPNLYKTLWKVEFPKKCKFFIW 994

Query: 181  ---------------------------------------VGIHLPLNFQ----------- 240
                                                   + IH P + Q           
Sbjct: 995  TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNW 1054

Query: 241  ------PNGLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 270
                     L +   S    +QK ++     A+ +W IW ERN RIF     +   + + 
Sbjct: 1055 NSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWED 1114

[Close]

BLAST of Lag0002968 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 2.9e-27
Identity = 93/332 (28.01%), Postives = 126/332 (37.95%), Query Frame = 0


Query: 1    MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
            +I+ K   +    FPS+ K+SS+ SP  +       F  N  W++ DG  I FW D W+ 
Sbjct: 707  LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 766

Query: 61   SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
            + PL L +PR +ALS      V + WN S   WN    R L   E + W      LP P 
Sbjct: 767  NSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 826

Query: 121  NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
              R P    W  +SN +F  AS +         P+ + +P     LW    P+K      
Sbjct: 827  PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 886

Query: 181  ---------------------------------------VGIHLPL-------------- 240
                                                   + IH P               
Sbjct: 887  TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 946

Query: 241  NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
            N  PN    L +   S    +QK ++     A  +W IW ERN RIF         + + 
Sbjct: 947  NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 1006

[Close]

BLAST of Lag0002968 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0


Query: 15   PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
            P   + SS+ SP  +  K    +    SW   DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568

Query: 75   SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
            SN+ S  V E W+  ++ WN  PRR L  RE  TW +    LPR  N R      WN   
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628

Query: 135  NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
            +  +++ASA+   + E   P  +   K L +LW + IP+K        +H  LN   N  
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688

Query: 195  ------------------------------------------------------GLCEEA 254
                                                                   LC + 
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748

Query: 255  FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
                G + K+I+      +T+WTIW  RN  IF++  +S  +  + I     +WSS SK 
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808

[Close]

BLAST of Lag0002968 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0


Query: 15   PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
            P   + SS+ SP  +  K    +    SW   DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568

Query: 75   SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
            SN+ S  V E W+  ++ WN  PRR L  RE  TW +    LPR  N R      WN   
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628

Query: 135  NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
            +  +++ASA+   + E   P  +   K L +LW + IP+K        +H  LN   N  
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688

Query: 195  ------------------------------------------------------GLCEEA 254
                                                                   LC + 
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748

Query: 255  FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
                G + K+I+      +T+WTIW  RN  IF++  +S  +  + I     +WSS SK 
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808

[Close]

BLAST of Lag0002968 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-28
Identity = 93/332 (28.01%), Postives = 127/332 (38.25%), Query Frame = 0


Query: 1   MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
           +I+ K   +    FPS+ K+SS+ SP  +       F  N  W++ DG  I FW D W+ 
Sbjct: 613 LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 672

Query: 61  SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
           + PL L++PR +ALS      V + WN S   WN    R L   E + W      LP P 
Sbjct: 673 NSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 732

Query: 121 NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
             R P    W  +SN +F  AS +         P+ + +P     LW    P+K      
Sbjct: 733 PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 792

Query: 181 ---------------------------------------VGIHLPL-------------- 240
                                                  + IH P               
Sbjct: 793 TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 852

Query: 241 NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
           N  PN    L +   S    +QK ++     A  +W IW ERN RIF         + + 
Sbjct: 853 NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 912

[Close]

BLAST of Lag0002968 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.1e-28
Identity = 94/331 (28.40%), Postives = 129/331 (38.97%), Query Frame = 0


Query: 1    MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
            +I+ K   +    FPS  KFSS+ SP  +  +    F  N SW++ DG  I FW D W+ 
Sbjct: 815  LIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLDNWNG 874

Query: 61   SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
            + PL L++PR +ALS      V E WN S+N W+    R L   E + W      LP P 
Sbjct: 875  NAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPL 934

Query: 121  NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
              R      WN +SN +F  AS +     E     A+ +P     LW    P+K      
Sbjct: 935  PNRGHPKPLWNLNSNNIFDTASVKRAI-AEAPISPANFHPNLYKTLWKVEFPKKCKFFIW 994

Query: 181  ---------------------------------------VGIHLPLNFQ----------- 240
                                                   + IH P + Q           
Sbjct: 995  TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNW 1054

Query: 241  ------PNGLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 270
                     L +   S    +QK ++     A+ +W IW ERN RIF     +   + + 
Sbjct: 1055 NSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWED 1114

[Close]

BLAST of Lag0002968 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-27
Identity = 93/332 (28.01%), Postives = 126/332 (37.95%), Query Frame = 0


Query: 1    MILHKLKPQNWEVFPSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSN 60
            +I+ K   +    FPS+ K+SS+ SP  +       F  N  W++ DG  I FW D W+ 
Sbjct: 707  LIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNG 766

Query: 61   SGPLHLSIPRFYALSNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPS 120
            + PL L +PR +ALS      V + WN S   WN    R L   E + W      LP P 
Sbjct: 767  NSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPL 826

Query: 121  NARVPDLLRWNHHSNGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------ 180
              R P    W  +SN +F  AS +         P+ + +P     LW    P+K      
Sbjct: 827  PDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYKTLWKVDFPKKCKFFIW 886

Query: 181  ---------------------------------------VGIHLPL-------------- 240
                                                   + IH P               
Sbjct: 887  TLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKW 946

Query: 241  NFQPN---GLCEEAFSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQ 271
            N  PN    L +   S    +QK ++     A  +W IW ERN RIF         + + 
Sbjct: 947  NSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWED 1006

[Close]

BLAST of Lag0002968 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0


Query: 15   PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
            P   + SS+ SP  +  K    +    SW   DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568

Query: 75   SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
            SN+ S  V E W+  ++ WN  PRR L  RE  TW +    LPR  N R      WN   
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628

Query: 135  NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
            +  +++ASA+   + E   P  +   K L +LW + IP+K        +H  LN   N  
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688

Query: 195  ------------------------------------------------------GLCEEA 254
                                                                   LC + 
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748

Query: 255  FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
                G + K+I+      +T+WTIW  RN  IF++  +S  +  + I     +WSS SK 
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808

[Close]

BLAST of Lag0002968 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 93/314 (29.62%), Postives = 129/314 (41.08%), Query Frame = 0


Query: 15   PSQAKFSSSKSPRLSNAKQGKKFIDNSSWELRDGSKIRFWHDKWSNSGPLHLSIPRFYAL 74
            P   + SS+ SP  +  K    +    SW   DGS + FWH KW N+ PL L IPR YAL
Sbjct: 1509 PVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYAL 1568

Query: 75   SNVNSLKVAEAWNHSNNSWNFFPRRSLLARETSTWTAFSTCLPRPSNARVPDLLRWNHHS 134
            SN+ S  V E W+  ++ WN  PRR L  RE  TW +    LPR  N R      WN   
Sbjct: 1569 SNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSD 1628

Query: 135  NGVFSIASARLFFWFEDQPPSASLNPKALVNLWSAVIPRK------VGIHLPLNFQPN-- 194
            +  +++ASA+   + E   P  +   K L +LW + IP+K        +H  LN   N  
Sbjct: 1629 SKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQ 1688

Query: 195  ------------------------------------------------------GLCEEA 254
                                                                   LC + 
Sbjct: 1689 KRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQL 1748

Query: 255  FSTKGSSQKSILFQALFASTVWTIWQERNTRIFSNYSNSMAHIRDQIIASAATWSSSSKL 267
                G + K+I+      +T+WTIW  RN  IF++  +S  +  + I     +WSS SK 
Sbjct: 1749 CRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKT 1808

The following BLAST results are available for this feature:

BLAST of Lag0002968 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	1.3e-27	28.01	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	1.7e-27	28.40	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0041397.1	2.9e-27	28.01	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK08190.1	3.7e-27	29.62	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0057507.1	3.7e-27	29.62	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0002968 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR15	6.2e-28	28.01	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	8.1e-28	28.40	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	1.4e-27	28.01	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	1.8e-27	29.62	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CA17	1.8e-27	29.62	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0002968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002968.1	Lag0002968.1	mRNA