Lag0002963 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002963
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionthionin-like protein 2
Locationchr4: 47058282 .. 47058714 (-)
RNA-Seq ExpressionLag0002963
SyntenyLag0002963
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGCAAGAAGTTGTGGTGTTTTGGTTGGTTTTGATGTTGGTTAATATTGCAGGCAGAGGCAGGTGCTCAGCCAAATCCTTTGGGAATTGCTTTTCCTCATGTAACGATCTCTGCCTTGTCAAGTTTTCAAAAGAAGCAGACCTACTGTGCGCTACAAAGTGCGCGGCGCAATGCGTCTTTTCCAATTCCATGGCCTCTGCATCCTCCACAATGGGCTTGAACCAACCAGACACTACTCGTACTTACTTCTGCAAGCTTGGTTGTGTAACCTCTCGATGCGCCAAGCTCAGCACCAAGGAAAACCCAGGTATCATAATGTTTCATTTTTGTTTTCATTCTAACATTTTTCTGAATAATTCTTCTCTTTTTCGTTCCACGATGATGATAATAAGGGTCGAGTAAAGGATGTGAAAAGGAGACTAAGTAA

mRNA sequence

ATGAAGAAGCAAGAAGTTGTGGTGTTTTGGTTGGTTTTGATGTTGGTTAATATTGCAGGCAGAGGCAGGTGCTCAGCCAAATCCTTTGGGAATTGCTTTTCCTCATGTAACGATCTCTGCCTTGTCAAGTTTTCAAAAGAAGCAGACCTACTGTGCGCTACAAAGTGCGCGGCGCAATGCGTCTTTTCCAATTCCATGGCCTCTGCATCCTCCACAATGGGCTTGAACCAACCAGACACTACTCGTACTTACTTCTGCAAGCTTGGTTGTGTAACCTCTCGATGCGCCAAGCTCAGCACCAAGGAAAACCCAGGGTCGAGTAAAGGATGTGAAAAGGAGACTAAGTAA

Coding sequence (CDS)

ATGAAGAAGCAAGAAGTTGTGGTGTTTTGGTTGGTTTTGATGTTGGTTAATATTGCAGGCAGAGGCAGGTGCTCAGCCAAATCCTTTGGGAATTGCTTTTCCTCATGTAACGATCTCTGCCTTGTCAAGTTTTCAAAAGAAGCAGACCTACTGTGCGCTACAAAGTGCGCGGCGCAATGCGTCTTTTCCAATTCCATGGCCTCTGCATCCTCCACAATGGGCTTGAACCAACCAGACACTACTCGTACTTACTTCTGCAAGCTTGGTTGTGTAACCTCTCGATGCGCCAAGCTCAGCACCAAGGAAAACCCAGGGTCGAGTAAAGGATGTGAAAAGGAGACTAAGTAA

Protein sequence

MKKQEVVVFWLVLMLVNIAGRGRCSAKSFGNCFSSCNDLCLVKFSKEADLLCATKCAAQCVFSNSMASASSTMGLNQPDTTRTYFCKLGCVTSRCAKLSTKENPGSSKGCEKETK
Homology
BLAST of Lag0002963 vs. NCBI nr
Match: XP_022151472.1 (thionin-like protein 2 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-08
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 1   MKKQEVVVFWLVLMLVNIAGRGRCSAKSFGNCFSSCNDLCLVKFSKEADLLCATKCAAQC 60
           MK  E+++  LVL LV  AG+   S  SFG C++ C  +C +         CA KC   C
Sbjct: 1   MKNSELILVMLVLSLV--AGK---STASFGKCYAKCFVVCAITPGIPVG-TCAAKCLTDC 60

Query: 61  VFSNSMASASSTMGLNQPDTTRTYFCKLGCVTSRCAKLSTKENPGSSK 109
           +F     +AS+T   N    TR YFCKLGC TS C K STK++P   K
Sbjct: 61  LF----RAASTTADFNDQIDTR-YFCKLGCATSLCTKFSTKKDPAEKK 97

BLAST of Lag0002963 vs. NCBI nr
Match: XP_019249054.1 (PREDICTED: thionin-like protein 2 [Nicotiana attenuata] >OIT02746.1 hypothetical protein A4A49_33068 [Nicotiana attenuata])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 5   EVVVFW-LVLMLVNIAGRGRCSAKSFGNCFSSCNDLCLVKFSKEADLLCATKCAAQCVFS 64
           E+   W LVL+LV   G+   S  +F +C+S C   CL++ S+     C ++C  +C+F+
Sbjct: 2   ELTKLWALVLILVAFVGQSNASLTNFKDCYSKCFVFCLIEPSQNL-CTCTSRCLKECIFN 61

Query: 65  ----NSMASASSTMGLN----QPDTTRTYFCKLGCVTSRCAKLSTKENPGSSK 109
               NS  S +++   N    QPD+    FCKLGC  S C+ LS+K  P   K
Sbjct: 62  SGSDNSTTSTATSSSNNDVRLQPDSKNLNFCKLGCAFSTCSTLSSKHQPNGGK 113

BLAST of Lag0002963 vs. NCBI nr
Match: XP_016480898.1 (PREDICTED: thionin-like protein 2 isoform X2 [Nicotiana tabacum])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 0

Query: 11  LVLMLVNIAGRGRCSAKSFGNCFSSCNDLCLVKFSKEADLLCATKCAAQCVF-------S 70
           L+L+LV   G+   S  +F +C+S C   CL++ S+     C ++C  +C+F       S
Sbjct: 9   LILILVAFVGQSNASLTNFKDCYSKCFVFCLIEPSQNL-CTCTSRCLKECIFNSGSDNSS 68

Query: 71  NSMASASSTMGLN-QPDTTRTYFCKLGCVTSRCAKLSTKENPGSSK 109
            S A++SS   +  QPD+    FCKLGC  S C+ LS+K  P   K
Sbjct: 69  TSTATSSSNNDVRLQPDSKNLNFCKLGCAFSTCSTLSSKHQPNGGK 113

BLAST of Lag0002963 vs. NCBI nr
Match: XP_016480897.1 (PREDICTED: thionin-like protein 2 isoform X1 [Nicotiana tabacum])

HSP 1 Score: 64.3 bits (155), Expect = 7.8e-07
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0

Query: 11  LVLMLVNIAGRGRCSAKSFGNCFSSCNDLCLVKFSKEADLLCATKCAAQCVF-------S 70
           L+L+LV   G+   S  +F +C+S C   CL++ S+     C ++C  +C+F       S
Sbjct: 9   LILILVAFVGQSNASLTNFKDCYSKCFVFCLIEPSQNL-CTCTSRCLKECIFNSGSDNSS 68

Query: 71  NSMASASSTMGLN-QPDTTRTYFCKLGCVTSRCAKLSTKENP 105
            S A++SS   +  QPD+    FCKLGC  S C+ LS+K  P
Sbjct: 69  TSTATSSSNNDVRLQPDSKNLNFCKLGCAFSTCSTLSSKHQP 109

BLAST of Lag0002963 vs. NCBI nr
Match: XP_009794068.1 (PREDICTED: thionin-like protein 2 [Nicotiana sylvestris] >XP_016489072.1 PREDICTED: thionin-like protein 2 [Nicotiana tabacum])

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 11  LVLMLVNIAGRGRCSAKSFGNCFSSCNDLCLVKFSKEADLLCATKCAAQCVFSNSMASAS 70
           L+L+LV    +   S  +F +C+S C   CL++ S+     C ++C  +C+F++   ++S
Sbjct: 9   LILILVVFVDQSNASLTNFKDCYSKCFVFCLIEPSQNL-CTCTSRCLKECIFNSGSDNSS 68

Query: 71  STMGLN---------QPDTTRTYFCKLGCVTSRCAKLSTKENPGSSK 109
           ST  +          QPD+    FCKLGC  S C+ LS+K  P   K
Sbjct: 69  STSTVTASSNNDVRLQPDSKNLNFCKLGCAFSTCSTLSSKHQPNGGK 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151472.14.1e-0841.67thionin-like protein 2 [Momordica charantia][more]
XP_019249054.11.2e-0735.40PREDICTED: thionin-like protein 2 [Nicotiana attenuata] >OIT02746.1 hypothetical... [more]
XP_016480898.12.7e-0735.85PREDICTED: thionin-like protein 2 isoform X2 [Nicotiana tabacum][more]
XP_016480897.17.8e-0736.27PREDICTED: thionin-like protein 2 isoform X1 [Nicotiana tabacum][more]
XP_009794068.11.0e-0632.71PREDICTED: thionin-like protein 2 [Nicotiana sylvestris] >XP_016489072.1 PREDICT... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038975Thionin-like proteinPANTHERPTHR36312THIONIN-LIKE PROTEIN 1coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002963.1Lag0002963.1mRNA