Lag0002911 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002911
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cytochrome P450 family protein
Location	chr4: 46646949 .. 46647875 (-)
RNA-Seq Expression	Lag0002911
Synteny	Lag0002911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGATGTTGAATTCTTCGAATTTGGTGTTTGCCACCGCCATGGTGGTGTCGAGCACGGCGGTGATTCTGGCGTTTTTCCGGCAGAATAAGGCCGACATCTCGCCGGCGGCGCCGCAACTCTCCGACCGACCCACTTCCCCGCAGGCCGATGGTCGGATTCTTCGCCCTTGTCTCTCTTCAGGTATGATATTAAAGACACCATTTTTTACTTCTTCTTCCAACTTTTAATTGAATTTTTCCCTTCAAAAACAACACTTTTTTATACTTTCTTCTTGGGAAATTTCAATTTTTATGCTTGTGGGTATTGTTTTAATTCCACCCAATTTGAAAGAAAATAAATTATGTTAGAATTAATTTTTGTCCAAATTTATGAGTTTTGAGAGATTTTTTTAATCAGGGGATACTTGTCCTAAAATGGGCTTAGATTTCATGAAAGATTTGATTTTTATTCGAATAATCGAGTTTTTCTAAGAGAATTTCTCTTTTGAAATTAGTGAGTTTTTTTTTTTTTTTTTTAGAGAACTTTTAAACATAATTGATTTTTATTTAAATTAGTAAAAATTGAGAGAATTTAGGAGAACTTGAACCGAGTTCATTGAGATAAGTTTAATTATTAGAGTAAAAATTGATTTTTTTTTTTTTTGGGATATTGTATGAGGGAATTTGTTTGTAACAGGTAGGAACAAAGATAGAAAGAAGAAGAAAGTACAATTTGCAGAGAATGTTGTTAAGAAGAAGAAAGTGACAGAAGAAGAAGAAATGAAAATTGTGGATGATGATTTTAACAAAAACACAGACAGAAAATTGAAGAAAAGCAGATGCAGAAGCGCTTTTCCAGGAATCCAAATGCCCGAAAATCGAGTCGCTCTCTACAATGGAATTCTCAGAGATCGATCTCACAGAATCGGATTTTCATACTGA

mRNA sequence

ATGTCGTCGATGTTGAATTCTTCGAATTTGGTGTTTGCCACCGCCATGGTGGTGTCGAGCACGGCGGTGATTCTGGCGTTTTTCCGGCAGAATAAGGCCGACATCTCGCCGGCGGCGCCGCAACTCTCCGACCGACCCACTTCCCCGCAGGCCGATGGTCGGATTCTTCGCCCTTGTCTCTCTTCAGGTAGGAACAAAGATAGAAAGAAGAAGAAAGTACAATTTGCAGAGAATGTTGTTAAGAAGAAGAAAGTGACAGAAGAAGAAGAAATGAAAATTGTGGATGATGATTTTAACAAAAACACAGACAGAAAATTGAAGAAAAGCAGATGCAGAAGCGCTTTTCCAGGAATCCAAATGCCCGAAAATCGAGTCGCTCTCTACAATGGAATTCTCAGAGATCGATCTCACAGAATCGGATTTTCATACTGA

Coding sequence (CDS)

ATGTCGTCGATGTTGAATTCTTCGAATTTGGTGTTTGCCACCGCCATGGTGGTGTCGAGCACGGCGGTGATTCTGGCGTTTTTCCGGCAGAATAAGGCCGACATCTCGCCGGCGGCGCCGCAACTCTCCGACCGACCCACTTCCCCGCAGGCCGATGGTCGGATTCTTCGCCCTTGTCTCTCTTCAGGTAGGAACAAAGATAGAAAGAAGAAGAAAGTACAATTTGCAGAGAATGTTGTTAAGAAGAAGAAAGTGACAGAAGAAGAAGAAATGAAAATTGTGGATGATGATTTTAACAAAAACACAGACAGAAAATTGAAGAAAAGCAGATGCAGAAGCGCTTTTCCAGGAATCCAAATGCCCGAAAATCGAGTCGCTCTCTACAATGGAATTCTCAGAGATCGATCTCACAGAATCGGATTTTCATACTGA

Protein sequence

MSSMLNSSNLVFATAMVVSSTAVILAFFRQNKADISPAAPQLSDRPTSPQADGRILRPCLSSGRNKDRKKKKVQFAENVVKKKKVTEEEEMKIVDDDFNKNTDRKLKKSRCRSAFPGIQMPENRVALYNGILRDRSHRIGFSY

Homology

[Close]

BLAST of Lag0002911 vs. NCBI nr
Match: XP_023004360.1 (uncharacterized protein LOC111497701 [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-34
Identity = 98/145 (67.59%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MSSMLNSSNLVFATAMVVSSTAVILAFFRQNKADISPAAPQLSDRPTSPQADGRILRPCL 60
           M S+LNSSNLVFATAMV SST +ILA+FR NK D +           + QAD RILRPCL
Sbjct: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDSA----------ATRQADVRILRPCL 60

Query: 61  SSGRNKDRKK--KKVQFAENVVKKKKVTEEEEMKIVDDDFNKNTDRKLKKSRCRSAFPGI 120
            SG NKDRKK  KKVQFAENV  KKK TE EEMK       K T RKLKK+RCRS+F G 
Sbjct: 61  CSGGNKDRKKKQKKVQFAENV--KKKATEAEEMK------RKITARKLKKNRCRSSFQGS 120

Query: 121 QMPENRVALYNGILRDRSHRIGFSY 144
           QMPENRVALYNGILRDRS+R+GFSY
Sbjct: 121 QMPENRVALYNGILRDRSNRMGFSY 127

[Close]

BLAST of Lag0002911 vs. NCBI nr
Match: KAG6593394.1 (hypothetical protein SDJN03_12870, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025741.1 hypothetical protein SDJN02_12239, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 7.1e-34
Identity = 98/145 (67.59%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MSSMLNSSNLVFATAMVVSSTAVILAFFRQNKADISPAAPQLSDRPTSPQADGRILRPCL 60
           M S+LNSSNLVFATAMV SST +ILA+FR NK           D   S QAD RILRPCL
Sbjct: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNK----------GDGAASRQADVRILRPCL 60

Query: 61  SSGRNKDRKK--KKVQFAENVVKKKKVTEEEEMKIVDDDFNKNTDRKLKKSRCRSAFPGI 120
            SG NKDRKK  KKVQFAENV  KKK TE EEMK       K   RKLKK+RCRS+F G 
Sbjct: 61  CSGGNKDRKKKQKKVQFAENV--KKKATEAEEMK------KKIMARKLKKNRCRSSFQGS 120

Query: 121 QMPENRVALYNGILRDRSHRIGFSY 144
           QMPENRVALYNGILRDRS+R+GFSY
Sbjct: 121 QMPENRVALYNGILRDRSNRMGFSY 127

[Close]

BLAST of Lag0002911 vs. NCBI nr
Match: XP_038900153.1 (uncharacterized protein LOC120087277 [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 3.0e-32
Identity = 93/150 (62.00%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 1   MSSMLNSSNLVFATAMVVSSTAVILAFFRQNKADISPAAPQLSDRPTSPQADGRILRPCL 60
           MSS+LNSSNLVFAT MVVSSTAVILAF RQNK DISP  PQLSD  TS Q++  ILRPCL
Sbjct: 1   MSSILNSSNLVFATVMVVSSTAVILAFLRQNKPDISPPPPQLSDGTTSRQSESPILRPCL 60

Query: 61  SSGRNKDRKKKKVQFAENVVKKKKVTEEEEMK-------IVDDDFNKNTDRKLKKSRCRS 120
           SSG  K+RKKKKVQFAEN VKK K T+ + ++       +     + ++   LKK +CR+
Sbjct: 61  SSGGKKERKKKKVQFAEN-VKKMKCTDHDHIRKKERSSALSASASSASSRLLLKKVQCRN 120

Query: 121 AFPGIQMPENRVALYNGILRDRSHRIGFSY 144
           A    Q+P+NR+ALYN ILRDRSHRI FSY
Sbjct: 121 AGRN-QIPQNRLALYNAILRDRSHRIQFSY 148

[Close]

BLAST of Lag0002911 vs. NCBI nr
Match: XP_022960430.1 (uncharacterized protein LOC111461163 [Cucurbita moschata])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 85/130 (65.38%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 16  MVVSSTAVILAFFRQNKADISPAAPQLSDRPTSPQADGRILRPCLSSGRNKDRKK--KKV 75
           MV SST +ILA+FR NK           D   S QAD RILRPCL SG NKDRKK  KKV
Sbjct: 1   MVASSTLMILAYFRHNK----------GDGAASRQADVRILRPCLCSGGNKDRKKKQKKV 60

Query: 76  QFAENVVKKKKVTEEEEMKIVDDDFNKNTDRKLKKSRCRSAFPGIQMPENRVALYNGILR 135
           QFAENV  KKK TE EEMK       K   RKLKK+RCRS+F G QMPENRVALYNGILR
Sbjct: 61  QFAENV--KKKATEAEEMK------KKIMARKLKKNRCRSSFQGSQMPENRVALYNGILR 112

Query: 136 DRSHRIGFSY 144
           DRS+R+GFSY
Sbjct: 121 DRSNRMGFSY 112

[Close]

BLAST of Lag0002911 vs. NCBI nr
Match: XP_023514528.1 (uncharacterized protein LOC111778785 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-27
Identity = 83/130 (63.85%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 16  MVVSSTAVILAFFRQNKADISPAAPQLSDRPTSPQADGRILRPCLSSGRNKDRKK--KKV 75
           MV SST +ILA+FR NK           D   S Q+D RILRPCL SG NKDRKK  KKV
Sbjct: 1   MVASSTLMILAYFRHNK----------GDGAASRQSDVRILRPCLCSGGNKDRKKKQKKV 60

Query: 76  QFAENVVKKKKVTEEEEMKIVDDDFNKNTDRKLKKSRCRSAFPGIQMPENRVALYNGILR 135
           QFAENV  KKK TE EE K       K T RKLKK+RCR +F G QMPENRVALYNGILR
Sbjct: 61  QFAENV--KKKATEAEETK------KKMTARKLKKNRCRGSFQGSQMPENRVALYNGILR 112

Query: 136 DRSHRIGFSY 144
           DRS+R+GFSY
Sbjct: 121 DRSNRMGFSY 112

The following BLAST results are available for this feature:

BLAST of Lag0002911 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004360.1	1.9e-34	67.59	uncharacterized protein LOC111497701 [Cucurbita maxima]	[more]
KAG6593394.1	7.1e-34	67.59	hypothetical protein SDJN03_12870, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900153.1	3.0e-32	62.00	uncharacterized protein LOC120087277 [Benincasa hispida]	[more]
XP_022960430.1	1.0e-27	65.38	uncharacterized protein LOC111461163 [Cucurbita moschata]	[more]
XP_023514528.1	4.9e-27	63.85	uncharacterized protein LOC111778785 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0002911 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..73
None	No IPR available	PANTHER	PTHR33564:SF15	PROTEIN, PUTATIVE-RELATED	coord: 1..143
None	No IPR available	PANTHER	PTHR33564	TRANSMEMBRANE PROTEIN	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002911.1	Lag0002911.1	mRNA