Lag0002816 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002816
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCR4-NOT transcription complex subunit like
Locationchr4: 45934285 .. 45936423 (-)
RNA-Seq ExpressionLag0002816
SyntenyLag0002816
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTGCTGATGGTTGTGACAGATGGATGGGTAATGTTTCATTGCAATCCTTGACAACGCCGATGAATTTTTATAAGTTTACATCCGACGCACCGTTGGTTTGATGCATATTTTAGCAGTTCTCTATGATCCCTTGCATTAGGCATATATTATTTCAGAAGATATCGGGATTGTTACATGTTGCAATGAGCATGTTAGCATTGGAGATGCCTTGCTGGTTCATAATTGGTTTCGGTATTCTAGTATTAGGTTGTACTTTTCTGAATGTTTTGGAGTTTAAATGTAATGAGCCTTTGATTTGGTACCTATTTGAGCAGTCCTCTTCGATCCCTTGCGTTTGGGTTCGGCATATAGAGTTTAAGAGGATATCGGGATTATTATATCTTGTGATGAGCATGCTAGCATTGAGGTTCATTTATAACTTAGTTATCTGAACTGAATCCACTTTGATTCATGTGTTGAAAATGGGATTTTCCGGGTAGTTACTAAATCCCAATTGGTTTTGTTTTGTCTAGTAATGCATAGAGCTTATAATACTATTACGAATGGGACTTCATTTTTCTGATTTTTTTTTCTTTACAATATATGGTTAGGGGATTCAGACCTCTGACGTTTTGGTTGAGAGTACATGTTTTATGTCAATTAAACTATGTTCATGTTGACAATTTTATAATCTCCTACGACGTCTAAATGGGGTGAATCTTTGATTTGATACTTATTTGGGCAGTTTTTTTAATAGAAACATCAAAAGGACTAGGGAAAGTCCTTTGGGCATTAAATGAGCATATATAGAATTTAGTCCATTACTTTTTGGTTTCCGGACGTGACTAGGAAAAGTCTTATTTGTTCTTTCTAAAAGCTCTTCTCTGATAGTGAAGTAGTTATATTTAACATTTTCGGGAAATGATAATTCTGGAATGGCCTGTTTAGTTTCTTTAAAAAGAATTGTTATACTTCAAACGCAACCTCACAAAACCAACATTCACCAAAACAGAGTTCCCAAGCCGATTAGAACAGATTATAAACTAAAACAGAGCTTAAACCAGATCTAAAACATAAACATAAAGGAGTAAAGGGAAGAACACATAGCTATTTTATAGGGGTTCGACACAAAGGCCTACATCCACTTGTGCAAGGTGAGCCATATTCTTTGATTATCAACCGAAAAAGGATCATTACAGCATATACATCTCCTCAACTTGAAATCGCTGGAATCTACACAAGGATTAGCCAGCCCCTTGAAAGAATTTGCCCGAAGAAGAAGGTAGAACAAAACATAAATCTAACCCTAGCTTCTTCTGTGCAGAGAATTTTCTCTTCCCTTTGTTGCAAATCTCTCTCACAAAATACACAATGATTACAATAGCATTTATAGGCAAAATCTAGGTCACAAGCCCAAATATTAATTTCTCTGATGTGTAATAATTTGCTGAAGTAATAATGAGCTGTAAACTAAAATACCAACTCACTATGCCACATAAGCTGTAAATGATAAAGAGACAGCCAGCAAGGATTATAATCAGAGTCAATTATTCAACAAGAATTGTAGATTTTTTGGGTTGATGAAACCACAGCTGTTGGATGCAACAAAGGATTCTGTCTTTTCAGTAATTTGGAGTTTCCTCTTTAAAGCATTCTGGAAGTATTGGGCCAAATACTGTTTCCTAGTTTAGCTTTTTGTTTTTTGCCTTTTGCTTTTTGCTTCATTTACTTCTACTCTTTCCTCACAAAGATATGACGTGCTTTTACAAATCAGTAGCTGAGATTCTCTTTTCACCTGCTAGTCACATTTACCAGAAATTGGAATAAATTTTTGAGTATGAGATGACTGATATGTGTACTCAAACAATATTGCTATTCAGATGAGTGCTTGTTTGATTTCTTTTATGCAGGTACAGGAACACCAAAGGATTGAAATTGAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGAAGGAAAATGATGGAAGTGAAGCAACTGCTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGACTTTTTGTCTTTTCCCTTGTAATTTGGATAATCACTTCTGCTGTCACGTCACTTATAGGTCTAGTCGTTAAGCTGATCTCTACAAAGTAG

mRNA sequence

ATGTGGTTGCTGATGGTTGTGACAGATGGATGGGCATATATTATTTCAGAAGATATCGGGATTGTTACATGTTGCAATGAGCATGTTAGCATTGGAGATGCCTTGCTGGTTCATAATTGGTTTCGGTACAGGAACACCAAAGGATTGAAATTGAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGAAGGAAAATGATGGAAGTGAAGCAACTGCTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGACTTTTTGTCTTTTCCCTTGTAATTTGGATAATCACTTCTGCTGTCACGTCACTTATAGGTCTAGTCGTTAAGCTGATCTCTACAAAGTAG

Coding sequence (CDS)

ATGTGGTTGCTGATGGTTGTGACAGATGGATGGGCATATATTATTTCAGAAGATATCGGGATTGTTACATGTTGCAATGAGCATGTTAGCATTGGAGATGCCTTGCTGGTTCATAATTGGTTTCGGTACAGGAACACCAAAGGATTGAAATTGAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGAAGGAAAATGATGGAAGTGAAGCAACTGCTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGACTTTTTGTCTTTTCCCTTGTAATTTGGATAATCACTTCTGCTGTCACGTCACTTATAGGTCTAGTCGTTAAGCTGATCTCTACAAAGTAG

Protein sequence

MWLLMVVTDGWAYIISEDIGIVTCCNEHVSIGDALLVHNWFRYRNTKGLKLSQRSFSITASNSSDGNSTKKENDGSEATADAQGPPFLTILAGLFVFSLVIWIITSAVTSLIGLVVKLISTK
Homology
[Close]
BLAST of Lag0002816 vs. NCBI nr
Match: XP_023004845.1 (uncharacterized protein LOC111498025 [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 41  FRYRNTKGLKLSQRSFSITASNSSDGNSTKKENDGSEATADAQGPPFLTILAGLFVFSLV 100
           FRY+NTKGLKL QRSFSITASNSSDGNSTK+ENDGS+ T DAQGPPFLTILAG FVFSLV
Sbjct: 45  FRYKNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLV 104

Query: 101 IWIITSAVTSLIGLVVKLISTK 123
           +WI++S+VT+LI LVVKLISTK
Sbjct: 105 LWIVSSSVTTLIALVVKLISTK 126

[Close]
BLAST of Lag0002816 vs. NCBI nr
Match: KAG7025683.1 (hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 41  FRYRNTKGLKLSQRSFSITASNSSDGNSTKKENDGSEATADAQGPPFLTILAGLFVFSLV 100
           FRY+NTKGL+L QRSFSITASNSSDGNSTK++NDGS+ T+DAQGPPFLTILAG FVFSLV
Sbjct: 45  FRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLV 104

Query: 101 IWIITSAVTSLIGLVVKLISTK 123
           +WI++S+VT+LI LVVKLISTK
Sbjct: 105 LWIVSSSVTTLIALVVKLISTK 126

[Close]
BLAST of Lag0002816 vs. NCBI nr
Match: XP_023513741.1 (uncharacterized protein LOC111778262 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 0 

Query: 14  IISEDIGIVT-----------CCNEHVSIGDALLV--HNWFRYRNTKGLKLSQRSFSITA 73
           IISEDI  VT           CC   +S    +LV    + RY+NTK LKL QRSFSITA
Sbjct: 66  IISEDIWTVTLAMSMLTWKFICCLVLLSESTLILVMEMEFGRYKNTKRLKLRQRSFSITA 125

Query: 74  SNSSDGNSTKKENDGSEATADAQGPPFLTILAGLFVFSLVIWIITSAVTSLIGLVVKLIS 123
           SNSSDGNSTK++ DGS+ T DAQGPPFLTILAG FVFSLV+WI++S+VT+LI LVVKLIS
Sbjct: 126 SNSSDGNSTKEKKDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVVKLIS 185

[Close]
BLAST of Lag0002816 vs. NCBI nr
Match: XP_022959607.1 (uncharacterized protein LOC111460632 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 41  FRYRNTKGLKLSQRSFSITASNSSDGNSTKKENDGSEATADAQGPPFLTILAGLFVFSLV 100
           FRY+NTKGLKL QRSFSITASNSSDGNSTK++NDGS+ T DAQGPPFLTILAG FVFSLV
Sbjct: 45  FRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLV 104

Query: 101 IWIITSAVTSLIGLVVKLISTK 123
           +WI++S+VT+LI L VKLISTK
Sbjct: 105 LWIVSSSVTTLIALAVKLISTK 126

[Close]
BLAST of Lag0002816 vs. NCBI nr
Match: KAG6593336.1 (hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 41  FRYRNTKGLKLSQRSFSITASNSSDGNSTKKENDGSEATADAQGPPFLTILAGLFVFSLV 100
           FRY+NTKGL+L QRSFSITASNSSDGNSTK++NDGS+ T DAQGPPFLTILAG FVFSLV
Sbjct: 45  FRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLV 104

Query: 101 IWIITSAVTSLIGLVVKLISTK 123
           +WI++S+VT+LI LVVKLISTK
Sbjct: 105 LWIVSSSVTTLIALVVKLISTK 126

The following BLAST results are available for this feature:
BLAST of Lag0002816 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023004845.11.6e-2684.15uncharacterized protein LOC111498025 [Cucurbita maxima][more]
KAG7025683.11.0e-2581.71hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023513741.11.4e-2563.93uncharacterized protein LOC111778262 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022959607.11.4e-2581.71uncharacterized protein LOC111460632 [Cucurbita moschata][more]
KAG6593336.11.4e-2581.71hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0002816 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002816.1Lag0002816.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane