Lag0002798 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002798
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Histone H3
Location	chr4: 45724786 .. 45725196 (-)
RNA-Seq Expression	Lag0002798
Synteny	Lag0002798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCACCAAGCAAACTGCCAGAAAATCCACCGGAGGCAAAGCCCCAAGAAAGCAATTGGCCACCAAAGCCGCCAGGAAGTCAGCTCCGGCCACCGGCGGAGTGAAGAAGCCCCATCGTTTCCGCCCTGGAACCGTCGCCCTTCGTGAAATCCGTAAGTACCAAAAGAGCACCGAGCTTTTGATCCGAAAGCTTCCGTTCCAACGGTTGGTTCGTGAGATCGCACAGGATTTCAAGACCGATTTGAGGTTCCAGAGTAGCGCCGTCTCGGCGCTGCAGGAGGCGGCGGAAGCCTACTTGGTCGGTCTGTTTGAAGATACGAATTTGTGTGCGATTCACGCTAAGAGGGTTACCATTATGCCTAAGGATATTCAATTGGCTAGGAGGATTAGAGGAGAAAGGGCTTAG

mRNA sequence

ATGGCTCGCACCAAGCAAACTGCCAGAAAATCCACCGGAGGCAAAGCCCCAAGAAAGCAATTGGCCACCAAAGCCGCCAGGAAGTCAGCTCCGGCCACCGGCGGAGTGAAGAAGCCCCATCGTTTCCGCCCTGGAACCGTCGCCCTTCGTGAAATCCGTAAGTACCAAAAGAGCACCGAGCTTTTGATCCGAAAGCTTCCGTTCCAACGGTTGGTTCGTGAGATCGCACAGGATTTCAAGACCGATTTGAGGTTCCAGAGTAGCGCCGTCTCGGCGCTGCAGGAGGCGGCGGAAGCCTACTTGGTCGGTCTGTTTGAAGATACGAATTTGTGTGCGATTCACGCTAAGAGGGTTACCATTATGCCTAAGGATATTCAATTGGCTAGGAGGATTAGAGGAGAAAGGGCTTAG

Coding sequence (CDS)

ATGGCTCGCACCAAGCAAACTGCCAGAAAATCCACCGGAGGCAAAGCCCCAAGAAAGCAATTGGCCACCAAAGCCGCCAGGAAGTCAGCTCCGGCCACCGGCGGAGTGAAGAAGCCCCATCGTTTCCGCCCTGGAACCGTCGCCCTTCGTGAAATCCGTAAGTACCAAAAGAGCACCGAGCTTTTGATCCGAAAGCTTCCGTTCCAACGGTTGGTTCGTGAGATCGCACAGGATTTCAAGACCGATTTGAGGTTCCAGAGTAGCGCCGTCTCGGCGCTGCAGGAGGCGGCGGAAGCCTACTTGGTCGGTCTGTTTGAAGATACGAATTTGTGTGCGATTCACGCTAAGAGGGTTACCATTATGCCTAAGGATATTCAATTGGCTAGGAGGATTAGAGGAGAAAGGGCTTAG

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of Lag0002798 vs. NCBI nr
Match: WP_212576888.1 (histone H3, partial [Vibrio parahaemolyticus])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 24  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 83

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 84  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 143

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 144 MPKDIQLARRIRGERA 159

[Close]

BLAST of Lag0002798 vs. NCBI nr
Match: XP_022154562.1 (uncharacterized protein LOC111021800 [Momordica charantia])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. NCBI nr
Match: VAH06629.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. NCBI nr
Match: XP_022635597.1 (histone H3-like centromeric protein CSE4 [Vigna radiata var. radiata])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. NCBI nr
Match: VAH21921.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. ExPASy Swiss-Prot
Match: P68429 (Histone H3.2 OS=Medicago sativa OX=3879 GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. ExPASy Swiss-Prot
Match: P68430 (Histone H3.2 OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. ExPASy Swiss-Prot
Match: P68427 (Histone H3.2 OS=Pisum sativum OX=3888 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. ExPASy Swiss-Prot
Match: P68428 (Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0002798 vs. ExPASy Swiss-Prot
Match: P59226 (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 3.1e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Lag0002798 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_212576888.1	1.1e-63	100.00	histone H3, partial [Vibrio parahaemolyticus]	[more]
XP_022154562.1	1.1e-63	100.00	uncharacterized protein LOC111021800 [Momordica charantia]	[more]
VAH06629.1	1.1e-63	100.00	unnamed protein product [Triticum turgidum subsp. durum]	[more]
XP_022635597.1	1.1e-63	100.00	histone H3-like centromeric protein CSE4 [Vigna radiata var. radiata]	[more]
VAH21921.1	1.1e-63	100.00	unnamed protein product [Triticum turgidum subsp. durum]	[more]

BLAST of Lag0002798 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68429	1.4e-66	100.00	Histone H3.2 OS=Medicago sativa OX=3879 GN=H3-1.1 PE=1 SV=2	[more]
P68430	1.4e-66	100.00	Histone H3.2 OS=Onobrychis viciifolia OX=3882 PE=2 SV=2	[more]
P68427	1.4e-66	100.00	Histone H3.2 OS=Pisum sativum OX=3888 PE=1 SV=2	[more]
P68428	1.4e-66	100.00	Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=2	[more]
P59226	3.1e-66	99.26	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 80..98 score: 84.78 coord: 114..135 score: 94.86 coord: 98..114 score: 96.93 coord: 34..55 score: 89.33 coord: 3..17 score: 97.1 coord: 17..31 score: 92.32 coord: 58..75 score: 97.46
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 34..136 e-value: 2.3E-74 score: 263.0
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..136
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 67..75
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..136 e-value: 1.2E-75 score: 253.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..133
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..132 e-value: 7.9E-54 score: 181.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002798.1	Lag0002798.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0010369	chromocenter
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity