Lag0002783 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002783
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 45631261 .. 45631790 (+)
RNA-Seq ExpressionLag0002783
SyntenyLag0002783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTAATGCCAAGCTTAAATCATAGCCTTAGATTTCCCTCGTCGAACGGCTCAAAGATCACGGCCTGCACAGGCCCGATTAATCCTCCGATCAATTCCACCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTACGGTGCCGCACCGTTTACTCGGACGTCGATAATTCTCCTTCCGCTTGCGCCTTCCATGGCCACATCACTGGTTCGTTTCGTATCGTCACCTTTTTCTAAGGTTTAATTGTGGAATGGATCATTTTAGTTGGAATTGGTTTGTAATTTTGTTTTAAATATCAGGGGAGAGAGGGCTGTTTGCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAGTGGAGCGACGGCTCGGGCGTGATCGTTTACAAGTGGAATGAGAAGGGCGATCGTCCCAACACCGGAACCGGCAACTGGAAAAGACGGTGGAGCTGTTGCTCCGAGTGCGATGAACATGCCCCTCCTTGTCGAAGGGGATGGCATGTTTCTTACGACGATGGTTTCACTCTGTTTTAA

mRNA sequence

ATGGCGTTAATGCCAAGCTTAAATCATAGCCTTAGATTTCCCTCGTCGAACGGCTCAAAGATCACGGCCTGCACAGGCCCGATTAATCCTCCGATCAATTCCACCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTACGGTGCCGCACCGTTTACTCGGACGTCGATAATTCTCCTTCCGCTTGCGCCTTCCATGGCCACATCACTGGGGAGAGAGGGCTGTTTGCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAGTGGAGCGACGGCTCGGGCGTGATCGTTTACAAGTGGAATGAGAAGGGCGATCGTCCCAACACCGGAACCGGCAACTGGAAAAGACGGTGGAGCTGTTGCTCCGAGTGCGATGAACATGCCCCTCCTTGTCGAAGGGGATGGCATGTTTCTTACGACGATGGTTTCACTCTGTTTTAA

Coding sequence (CDS)

ATGGCGTTAATGCCAAGCTTAAATCATAGCCTTAGATTTCCCTCGTCGAACGGCTCAAAGATCACGGCCTGCACAGGCCCGATTAATCCTCCGATCAATTCCACCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTACGGTGCCGCACCGTTTACTCGGACGTCGATAATTCTCCTTCCGCTTGCGCCTTCCATGGCCACATCACTGGGGAGAGAGGGCTGTTTGCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAGTGGAGCGACGGCTCGGGCGTGATCGTTTACAAGTGGAATGAGAAGGGCGATCGTCCCAACACCGGAACCGGCAACTGGAAAAGACGGTGGAGCTGTTGCTCCGAGTGCGATGAACATGCCCCTCCTTGTCGAAGGGGATGGCATGTTTCTTACGACGATGGTTTCACTCTGTTTTAA

Protein sequence

MALMPSLNHSLRFPSSNGSKITACTGPINPPINSTSFRSAAAKRCLRCRTVYSDVDNSPSACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNEKGDRPNTGTGNWKRRWSCCSECDEHAPPCRRGWHVSYDDGFTLF
Homology
BLAST of Lag0002783 vs. NCBI nr
Match: XP_022959906.1 (uncharacterized protein LOC111460822 [Cucurbita moschata] >KAG6593308.1 hypothetical protein SDJN03_12784, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 126/145 (86.90%), Postives = 131/145 (90.34%), Query Frame = 0

Query: 1   MALMPSLNHSLRFPSSNGSKITACTGPINPPINSTSFRSAAAKRCLRCRTVYSDVDNSPS 60
           MAL   LNHSL FPSSNGSKITACT    PPI + SFRSAAAKRCLRCRTVYSD+DNSPS
Sbjct: 1   MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 61  ACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNEKGDRPNTGTGNWKRRWSCC 120
           ACAFHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWNEKG+RPNTG GNWKRRWSCC
Sbjct: 61  ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120

Query: 121 SECDEHAPPCRRGWHVSYDDGFTLF 146
           SE DE APPCRRGWHVSYDDGFTLF
Sbjct: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145

BLAST of Lag0002783 vs. NCBI nr
Match: XP_008461278.1 (PREDICTED: uncharacterized protein LOC103499914 [Cucumis melo] >KAA0058637.1 uncharacterized protein E6C27_scaffold339G001060 [Cucumis melo var. makuwa] >TYK10444.1 uncharacterized protein E5676_scaffold459G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 277.7 bits (709), Expect = 5.7e-71
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 0

Query: 1   MALMPSLNHSLRFPSSNGSKITACTGPINPPINSTSFRSAA-AKRCLRCRTVYSDVDNSP 60
           MAL PSL+HSL FP  NGSKI AC+  INPPINSTSF+S+A AKRCLRC TVYSDVDNSP
Sbjct: 5   MALAPSLSHSLTFPPWNGSKIVACSNSINPPINSTSFQSSAVAKRCLRCHTVYSDVDNSP 64

Query: 61  SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNEKGDRPNTGTGNWKRRWSC 120
           SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWN+K +RPN+GTGNWKRRWSC
Sbjct: 65  SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124

Query: 121 CSECDEHAPPCRRGWHVSYDDGFTLF 146
           CSE DE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150

BLAST of Lag0002783 vs. NCBI nr
Match: XP_004135925.1 (uncharacterized protein LOC101205320 [Cucumis sativus] >KGN45139.1 hypothetical protein Csa_016073 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 125/146 (85.62%), Postives = 133/146 (91.10%), Query Frame = 0

Query: 1   MALMPSLNHSLRFPSSNGSKITACTGPINPPINSTSFRSAA-AKRCLRCRTVYSDVDNSP 60
           MAL PSLNHS RFP  NGSKI AC+  INPPINSTSF+S++ AKRCLRC TVYSDVDNSP
Sbjct: 5   MALAPSLNHSPRFPPWNGSKIVACSNSINPPINSTSFQSSSVAKRCLRCHTVYSDVDNSP 64

Query: 61  SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNEKGDRPNTGTGNWKRRWSC 120
           SAC FHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWN+K +RPN+GTGNWKRRWSC
Sbjct: 65  SACVFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124

Query: 121 CSECDEHAPPCRRGWHVSYDDGFTLF 146
           CSE DE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150

BLAST of Lag0002783 vs. NCBI nr
Match: XP_023004680.1 (uncharacterized protein LOC111497902 [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 1.6e-70
Identity = 125/145 (86.21%), Postives = 129/145 (88.97%), Query Frame = 0

Query: 1   MALMPSLNHSLRFPSSNGSKITACTGPINPPINSTSFRSAAAKRCLRCRTVYSDVDNSPS 60
           M L   LN  LRFPSSNGSKITACT    PPI + SFRSAAAKRCLRCRTVYSD+DNSPS
Sbjct: 1   MELSTCLNRRLRFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 61  ACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNEKGDRPNTGTGNWKRRWSCC 120
           ACAFHGHITGE GLF+LSPPHQGIDGEWSDGSGVIVYKWNEKG+RPNTG GNWKRRWSCC
Sbjct: 61  ACAFHGHITGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120

Query: 121 SECDEHAPPCRRGWHVSYDDGFTLF 146
           SE DE APPCRRGWHVSYDDGFTLF
Sbjct: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145

BLAST of Lag0002783 vs. NCBI nr
Match: KAG7025658.1 (hypothetical protein SDJN02_12155, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 6.3e-62
Identity = 112/132 (84.85%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MALMPSLNHSLRFPSSNGSKITACTGPINPPINSTSFRSAAAKRCLRCRTVYSDVDNSPS 60
           MAL   LNHSL FPSSNGSKITACT    PPI + SFRSAAAKRCLRCRTVYSD+DNSPS
Sbjct: 1   MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 61  ACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNEKGDRPNTGTGNWKRRWSCC 120
           ACAFHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWNEKG+RPNTG GNWKRRWSCC
Sbjct: 61  ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120

Query: 121 SECDEHAPPCRR 133
           SE DE APPCR+
Sbjct: 121 SEYDEDAPPCRK 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022959906.11.1e-7186.90uncharacterized protein LOC111460822 [Cucurbita moschata] >KAG6593308.1 hypothet... [more]
XP_008461278.15.7e-7186.30PREDICTED: uncharacterized protein LOC103499914 [Cucumis melo] >KAA0058637.1 unc... [more]
XP_004135925.11.3e-7085.62uncharacterized protein LOC101205320 [Cucumis sativus] >KGN45139.1 hypothetical ... [more]
XP_023004680.11.6e-7086.21uncharacterized protein LOC111497902 [Cucurbita maxima][more]
KAG7025658.16.3e-6284.85hypothetical protein SDJN02_12155, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35106BNAA07G25190D PROTEINcoord: 17..145
NoneNo IPR availablePANTHERPTHR35106:SF4OS09G0485800 PROTEINcoord: 17..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002783.1Lag0002783.1mRNA