Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGTGGAGGGAGATTCGAACCACAAACCTTGTGGTTATCTGATAAGAATCATGGTGCTCCACACGTTCCAATTGGACCTATTACACGCGCCAAGGCTAAGAAGCTTCAACAAGCATTCTTCATTCACATTCAAAATTGGTTAGGTTCAACTCCACATTCATTTCACATGCTGCAAATTAACCCAAGAGAGGACGACGTTGTGAAAGTCAACGTTTGCAAGATTGACGTTGCACCGGCCTTTTGAAGTTTCCTTGTTATTTTAAGTTATGAACTTTTGTTGTATTTTTTTGAACTTTTTGGCTTCCAAAAACGTGGATTTCAAGGTTATATTAAGTGGGGAGTTACTTTGTAGGCCAATTATGGTCATGAATGCTTTGTAGCTTTTATTTTGGAGATTTGAAAGGTTGGGGATTTCATTCACACAATGGCTATAAAAAGCTTCATTCTAGTATGTAAAATTGAGATTTGAGATGAATGAAATATGAACTCTCATATTTGAGACTTTTCTTAGAAATCCCTTTTCTAGAATTCTTGTGATAGATTGCATGTTGAGCCATTCAATCCGACCTTAATCAAGTTTGATTGTGGAATGACTCAATCTAGAACAAGATTTCCAATCTTGCTTCTAGATCATTGATCATAAGAGGTAATCAATTTTTAGCCTTTTCTCTTGGTTGGTTCTAATTTGTGTAAGGAGGTGTTAATCTCTTAGTTTCAAGGGTTAATCTCTTAGTTTCAAGGCATTTCGTGAAAATATGGATGAATTACATAAATCCATAAAGTACATGACCGAATTATATCATGAATTGAAATTGCAGGATCAAGCAAGAGAGGCACAAATCAAAAAATCCATTCAAGAAGAAGAAGATTGCCCAATGCCTCCAGATGATGTTTCAAATGATGATGTTGCTATTCAATGCCCATGA mRNA sequence ATGTGTGGAGGGAGATTCGAACCACAAACCTTGTGGTTATCTGATAAGAATCATGGTGCTCCACACGTTCCAATTGGACCTATTACACGCGCCAAGGCTAAGAAGCTTCAACAAGCATTCTTCATTCACATTCAAAATTGGTTAGGTTCAACTCCACATTCATTTCACATGCTGCAAATTAACCCAAGAGAGGACGACGTTGTGAAAGTCAACGATCAAGCAAGAGAGGCACAAATCAAAAAATCCATTCAAGAAGAAGAAGATTGCCCAATGCCTCCAGATGATGTTTCAAATGATGATGTTGCTATTCAATGCCCATGA Coding sequence (CDS) ATGTGTGGAGGGAGATTCGAACCACAAACCTTGTGGTTATCTGATAAGAATCATGGTGCTCCACACGTTCCAATTGGACCTATTACACGCGCCAAGGCTAAGAAGCTTCAACAAGCATTCTTCATTCACATTCAAAATTGGTTAGGTTCAACTCCACATTCATTTCACATGCTGCAAATTAACCCAAGAGAGGACGACGTTGTGAAAGTCAACGATCAAGCAAGAGAGGCACAAATCAAAAAATCCATTCAAGAAGAAGAAGATTGCCCAATGCCTCCAGATGATGTTTCAAATGATGATGTTGCTATTCAATGCCCATGA Protein sequence MCGGRFEPQTLWLSDKNHGAPHVPIGPITRAKAKKLQQAFFIHIQNWLGSTPHSFHMLQINPREDDVVKVNDQAREAQIKKSIQEEEDCPMPPDDVSNDDVAIQCP
Homology
BLAST of Lag0002735 vs. NCBI nr
Match: XP_022158803.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]) HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16 Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0
Query: 15 DKNHGAPHVPIGPITRAKAKKLQQAFFIHIQNWLGSTPHSFHMLQINPREDDVVKVN 72
DKNHG PHV GPITRAKAKKLQQAF IH+QNW+GS F MLQ NP EDDVVKVN
Sbjct: 1041 DKNHGVPHVSTGPITRAKAKKLQQAFLIHVQNWIGSVQPLFQMLQNNPSEDDVVKVN 1097
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022158803.1 | 1.0e-16 | 77.19 | LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 67..87 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 82..106 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
|
