Lag0002731 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002731
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Location	chr4: 45157212 .. 45159118 (-)
RNA-Seq Expression	Lag0002731
Synteny	Lag0002731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAGAAGGCGAACCTATTCAAAGGGCAACAGAAGAGGAAAACCATCCCTCCCAATCGCCATGGCAAAGTCCCCCAAACTCGTAAAGGTATCTTTTTCTTTTTCTTTCACATTCTGTATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTATTCATTCGGCGTCGTCTTTGCAGGGAAAAGATTTGTAAAGCCATCAAAGATCACTAAAGAGATGGAAACAGATCGGGTATGTTTCTCTTTTCGTGCTTATCCGGTAATTGATGTAGACTCTAGTAACCGTCAGAGTAGAAACTTATGTCGATAAGTTGTTTTTGATGCGGTAGTTCGTATTTTCGATATTTAGCTCATTCTGTGGTAGTTTTGGGTGTATTGGATTAAGATGCAACCGAAGGTAAGGTATCTAAATAGTTAAGGTGTGAGGATCCCACATTAGTAAGATAAGTGGAGATCTCCAATTAATAAGATACAAAGGCTACTCCTCTCATTGCCAATTGGTTTTGAGATGAAACCCCATGTAATGTAATATATGTCGCATTGTCTTGCTGTTTTGCAATTCAGGTTAACTATTAAGTATTAATCATTCATTATTTTGGTTAGCTGAGAACAGTTCTGAATTTTCTCTGCCATTTCTTTGCCGGGAATGGATTTTTTGTATGGTTTTTAAGTCATCTTCTTTTGGCTGAATTTTGGTGGCTTTTAAGTTAATTTCAAATTCCACTGTGACATCGCTAAATTTGGTAGTTTCTTAGTTAATTTGGTAGTTCCTCCTTTTTTAGGAATGGTCTCTTGCGCAAAGATAGGATCTCAATTTCTCTCAACTGAAAGAAAGTTAAGAAACACTGTGCAAGGCCAAAGAAAGGAGTATTTTTATTGATTTCTAAATTATAAGATATTTGGTTGGTTGACTGAGATTTTGTACAGTAGAAATGCTTTTGGCTTTTGAAAGGAGAGGAGACAAGTAGTCTTGATTTGAAGGGAATCGAATCGTTTTTGTATATGCACTTGGAGTTTCCTTAGCATGAATTAGTTTTTTCCTTGGCTAGTTTTTTTTTTTCACATTCCTCTGTAAAGGTTGAACTATGGATGAATAGGAATTACGTTAGGTTCTCAAGAAAGTTTGTGCCCTTTTGTATCAATAATAGTAGGCTGTCTACTTCTTCTAGAGTAAATATGTATTTGTGCAATCCTGAGTGTGAGACACATGAGACTTTAGCCTAAGTGTCAAACCTATATTTCCCCATCTATTGGTGACCATAAGCATGCCAAACATGGTTGTCATGTTTGTGCTCGTCTCTAGTTTGTCTTGTACCTTTCAAGAGGAAGAGTAAATTTCCTTGGACTAATATTATTTTTCCTAGTATGTAGTAGCAGTTAATACTTCATAGAGGAGAGAGAGAGAGAGAAAGAACTATCTTCTACAACTCCTTCGTTTGCCATCCCCCTTTTCAAACTAGTCATATTAATGGAAGGTTTTATTTCTTATCATAAAAAGTTATTTTTGTGTTTTAAAGTGGAATATTGTATATAATGGCTAAATTGTTCCTGTATTTAGCATAATGCTATATTGTTTAACTATATTCTTCTTCCTTGAGATGCCTTTTGTTGGAAATGAATAGAATGTATAGGACACATTATGCATGCTGTTTCATGGATAATAGACTCACAATGTTTACATTACTTTTGCCGTCTCTTGTTGAGAATATACATGGTTTATGAACTTTTTCTCCATGACTGATAATCTTGATATCCTGAAAAAAAAATAATAACCAGGAAGTGAGCAAGTTCATAAACTACTGCAATGAGACGAAGGCTGCTACTTTAGCCAACAAGGAAGGTGGCCAACTGAGTATTGTTAAAACCCCATCGGATGCTGGTAATAGCAGTGCAAAGCAAGATTAG

mRNA sequence

ATGACTCAGAAGGCGAACCTATTCAAAGGGCAACAGAAGAGGAAAACCATCCCTCCCAATCGCCATGGCAAAGTCCCCCAAACTCGTAAAGGGAAAAGATTTGTAAAGCCATCAAAGATCACTAAAGAGATGGAAACAGATCGGGAAGTGAGCAAGTTCATAAACTACTGCAATGAGACGAAGGCTGCTACTTTAGCCAACAAGGAAGGTGGCCAACTGAGTATTGTTAAAACCCCATCGGATGCTGGTAATAGCAGTGCAAAGCAAGATTAG

Coding sequence (CDS)

ATGACTCAGAAGGCGAACCTATTCAAAGGGCAACAGAAGAGGAAAACCATCCCTCCCAATCGCCATGGCAAAGTCCCCCAAACTCGTAAAGGGAAAAGATTTGTAAAGCCATCAAAGATCACTAAAGAGATGGAAACAGATCGGGAAGTGAGCAAGTTCATAAACTACTGCAATGAGACGAAGGCTGCTACTTTAGCCAACAAGGAAGGTGGCCAACTGAGTATTGTTAAAACCCCATCGGATGCTGGTAATAGCAGTGCAAAGCAAGATTAG

Protein sequence

MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKQD

Homology

[Close]

BLAST of Lag0002731 vs. NCBI nr
Match: XP_038897231.1 (uncharacterized protein LOC120085359 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 5.1e-38
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDREVSKFINYCNET 60
          MTQKANLFKGQQKRKTIPPNRHGK+PQTRKGKRFVKPSK TKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAGNSSAKQD 91
          KAATLANKEGGQLSIVKTPSD GNS+AK++
Sbjct: 61 KAATLANKEGGQLSIVKTPSDTGNSNAKKE 90

[Close]

BLAST of Lag0002731 vs. NCBI nr
Match: XP_022145051.1 (uncharacterized protein LOC111014568 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 3.3e-37
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDREVSKFINYCNET 60
          MTQKAN FKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANQFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAGNSSAKQD 91
          KAATLANKEGGQLSIVK P DAGNSSAK++
Sbjct: 61 KAATLANKEGGQLSIVKAPLDAGNSSAKKE 90

[Close]

BLAST of Lag0002731 vs. NCBI nr
Match: XP_008461352.1 (PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 uncharacterized protein E6C27_scaffold339G00540 [Cucumis melo var. makuwa] >TYK10387.1 uncharacterized protein E5676_scaffold459G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDREVSKFINYCNET 60
          MTQKANLFKG+QKRKTIPPNRHGK+PQTRKGKRFVKPSK TKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAGNSSAKQD 91
          KAATLANKEGGQLSIVKTP++A NS+AK++
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lag0002731 vs. NCBI nr
Match: XP_004135948.1 (uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical protein Csa_016027 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDREVSKFINYCNET 60
          MTQKANLFKG+QK KTIPPNRHGK+PQTRKGKRFVKPSK TKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAGNSSAKQD 91
          KAATLANKEGGQLSIVKTP++A NS+AK++
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lag0002731 vs. NCBI nr
Match: KAG6575705.1 (hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDREVSKFINYCNET 60
          MTQKA LFKGQQKRKTIPPNRHGK+PQTRKGKR VKPSK TKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAGNSS 87
          KAATLANKEGGQLSIVKTPSDAG +S
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAGGNS 86

The following BLAST results are available for this feature:

BLAST of Lag0002731 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897231.1	5.1e-38	93.33	uncharacterized protein LOC120085359 [Benincasa hispida]	[more]
XP_022145051.1	3.3e-37	93.33	uncharacterized protein LOC111014568 [Momordica charantia]	[more]
XP_008461352.1	2.8e-36	90.00	PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 unc...	[more]
XP_004135948.1	1.4e-35	88.89	uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical ...	[more]
KAG6575705.1	1.2e-34	91.86	hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0002731 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019034	Uncharacterised protein family UPF0390	PFAM	PF09495	DUF2462	coord: 1..79 e-value: 8.1E-8 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..32
None	No IPR available	PANTHER	PTHR36769	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002731.1	Lag0002731.1	mRNA