Lag0002718 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002718
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L44
Location	chr4: 45082191 .. 45083350 (-)
RNA-Seq Expression	Lag0002718
Synteny	Lag0002718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTATGTTGTGTTTGTGATGAGGATTTAACTAGAGCACGTTCTTCGTTCTATAATCTTATCTTATTTGATTACGAACGCTGGAAGCTAAAGCCTCGTAAAATTATTTTTGATGTAAGCTAATTTTGTCGATTTTCTGGAATTTATTGTGTATAAATTGTAATCTGGGAAATTGGATTGATGAGTTTTGGAATTGTGTTGGTTGTCTCACCTGCGAGAGTTGTTTCTCAGTGTTCATTGGCATTTATGAAGGGCATTGTTCTGCTAGAAGGTCAATGTTGTGTTCTAATGAAGTGTGGTTCCTTGAGTTTTCTAAGTTATGTTTATTCTTAGGAAGTGTTAATGCTGTAGATCTGGTTTAGATATACTCGAATTGAAAACAAATTTGTAAGTCGAGACTAAAGAGACAGCACTGCCGTTGCAAACATTTTGGATTGTGTCAGGAATAAGTTTGCTCTGGTTTTCTTGATTCAAGCATTTTTGCGTCTAGTTACCAATTATGTCTTCCTCTTCAAGAATTTCTGCAAATTTGGAGCTATTTTATATTTCTTGTAGAGTTATACTAATGTATGATCTTCACATTCTCGTTTTTTTATTTGAATGATTTTAAATTCTTCTGCTAAATAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAGAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAGCAATCAGGATATGGAGGACAGACCAAGCCTGTCTTCCACAAGAAGGTAAAAAAAATTCATGAGAGCTTTAAATTTTGTTTATTTTCCTTAAAGAAGTAATCATAAGAGCTTTAAATTTCCTGACAGGCCAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTGTCGCAGCATCCCATTAAGGTTTGTACTCCAAACAAATTTCTCATTCATTGGTGTTTCTTTGCTGATATAAACCATGTTTGGATAGAACCCTTATAATAGTTATCCTTCAATTTCTCTCTCACTAATTCCTAGCTTCTCATTTGTTATTGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

mRNA sequence

ATGATTCTATGTTGTGTTTGTGATGAGGATTTAACTAGAGCACGTTCTTCGTTCTATAATCTTATCTTATTTGATTACGAACGCTGGAAGCTAAAGCCTCGTAAAATTATTTTTGATGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAGAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAGCAATCAGGATATGGAGGACAGACCAAGCCTGTCTTCCACAAGAAGGCCAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTGTCGCAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Coding sequence (CDS)

ATGATTCTATGTTGTGTTTGTGATGAGGATTTAACTAGAGCACGTTCTTCGTTCTATAATCTTATCTTATTTGATTACGAACGCTGGAAGCTAAAGCCTCGTAAAATTATTTTTGATGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAGAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAGCAATCAGGATATGGAGGACAGACCAAGCCTGTCTTCCACAAGAAGGCCAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTGTCGCAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Protein sequence

MILCCVCDEDLTRARSSFYNLILFDYERWKLKPRKIIFDVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF

Homology

[Close]

BLAST of Lag0002718 vs. NCBI nr
Match: KAA3462505.1 (60S ribosomal protein L44-like [Gossypium australe])

HSP 1 Score: 220.7 bits (561), Expect = 8.1e-54
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 37  IFDVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 96
           +F VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 21  VFQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 80

Query: 97  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 144
           HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 81  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 127

[Close]

BLAST of Lag0002718 vs. NCBI nr
Match: KAE9448121.1 (hypothetical protein C3L33_19980, partial [Rhododendron williamsianum])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 31  LKPRKIIFDVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGG 90
           + P  ++  VNVPKTKKTYCKSK+CRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGG
Sbjct: 2   ISPGNLLVQVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGG 61

Query: 91  QTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 144
           QTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  QTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of Lag0002718 vs. NCBI nr
Match: XP_017635996.1 (PREDICTED: 60S ribosomal protein L44-like [Gossypium arboreum] >KHG28366.1 60S ribosomal L44 [Gossypium arboreum])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 35  KIIFDVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 94
           K + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 2   KFVDEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 61

Query: 95  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 144
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 110

[Close]

BLAST of Lag0002718 vs. NCBI nr
Match: KAE8691450.1 (60S ribosomal protein L44 [Hibiscus syriacus])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 21  LILFDYERWKLKPRKIIFDVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRR 80
           L+ FD   ++L   +++F VNVPKTKKTYCKSKEC KHTLHKVTQYKKGKDSLAAQGKRR
Sbjct: 19  LLNFDTSSFELS-CELVFQVNVPKTKKTYCKSKECMKHTLHKVTQYKKGKDSLAAQGKRR 78

Query: 81  YDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT 140
           YDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT
Sbjct: 79  YDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT 138

Query: 141 SLF 144
           SLF
Sbjct: 139 SLF 140

[Close]

BLAST of Lag0002718 vs. NCBI nr
Match: KAG5549369.1 (hypothetical protein RHGRI_014649 [Rhododendron griersonianum])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 31  LKPRKIIFDVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGG 90
           + P  ++  VNVPKTKKTYCKSK+CRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGG
Sbjct: 5   ISPGNMLVQVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGG 64

Query: 91  QTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 144
           QTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 65  QTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 117

[Close]

BLAST of Lag0002718 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 40  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 99
           VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 100 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 144
           AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Lag0002718 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 205.3 bits (521), Expect = 4.6e-52
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 40  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 99
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 100 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 144
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Lag0002718 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 40  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 99
           VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 100 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 143
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of Lag0002718 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 40  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 99
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 100 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 143
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of Lag0002718 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 40  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 99
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 100 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 143
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

The following BLAST results are available for this feature:

BLAST of Lag0002718 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA3462505.1	8.1e-54	98.13	60S ribosomal protein L44-like [Gossypium australe]	[more]
KAE9448121.1	1.4e-53	92.04	hypothetical protein C3L33_19980, partial [Rhododendron williamsianum]	[more]
XP_017635996.1	1.4e-53	96.33	PREDICTED: 60S ribosomal protein L44-like [Gossypium arboreum] >KHG28366.1 60S r...	[more]
KAE8691450.1	1.4e-53	87.80	60S ribosomal protein L44 [Hibiscus syriacus]	[more]
KAG5549369.1	1.8e-53	92.04	hypothetical protein RHGRI_014649 [Rhododendron griersonianum]	[more]

BLAST of Lag0002718 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	1.2e-55	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	4.6e-52	93.27	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	2.5e-42	77.67	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	4.3e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	4.3e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 57..131 e-value: 1.8E-34 score: 118.0
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 25..143
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 101..112
None	No IPR available	GENE3D	3.10.450.80		coord: 40..143 e-value: 4.2E-50 score: 170.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..86
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 25..143
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 40..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002718.1	Lag0002718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome