Lag0002713 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002713
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPhotosystem II stability/assembly factor
Locationchr4: 45057775 .. 45061741 (+)
RNA-Seq ExpressionLag0002713
SyntenyLag0002713
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTCTCTCTTTGCTCCTTCCTCTCCTCGCCATTCCCTCACCTCCCTCTCTCAACCCAAGTTCAGCCTCGAGGTGTTAATTCTACCACTCCCAAAGCCTCTCTTCAGAATTCTTCCATCAATCGCCGGCAGTTCGTTGCTGAGACGGCAGCCGCGGTTTCTCTGTCGCTTTCTCCGTTGATTGCTCCCGTACAACCGGCGAAGTCCGAAGAAACTCTGTCGGAGTGGGAGAGGCTGTACCTCCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGATGATTTGGACCATGGTTAGTTTCGATAGCTTTGAATTCTTTTGCTGCTTGGTCGTTGAGAAAGATATGCTAAAGAATTTTGGAATTGTTTATGTTTTTCTGCTACGATTTTTCCTAGTCGCGATTAGTAATTAATTGTTGGAAACATCTGAGGTTTGGGAGGATTTGTACACTGAACAGCTATTAGTCGTCTGTTAAGACTAGAACTGTAGTTTAGTTAAGTTAAGCTGGTCTTGTTAAGATTTCGCATTTCCAATTATTTTTAAATCAGTTTCTTCATCGATAATTCTTTTTGGGGGTGGGGAGTTTGGTGTCTAATTGAAATCTTTCAAATAATTTTATCTACCTTATTTGTGCTTAAGAATTTTGTCAAGGATCCTGACTATTGTAGTTTTTAATTCCTCGTTCCTACTGATATGGTTTCGAGATCCTTCCGCCAATATAATGCAATGAAATCATCTGACACTTTCAGTCCACTGCAGGATTCCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTCAAAGGAAAGGAGGGATGGATTGTTGGCAAACCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAGAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATATGGTAGACTTATATTTTGTGCCATCGATAAGGAATTCATAAACGATAGTGTGCTTGGATTTTAGTTTGTTCAATTTTTAGTCTATCCTCGAATGCTTGGCTGACTGTAAGTTATAGCTTTTTCTTTATCAATTGTAGTTATAATGCTCATTTAATATAGCTAAACAAGTTAGACCACAAGAGCAATAACCTACTATTCACAGCTATAAATTAAGATGGAAATTTTGAGTTTTTTTTTTTTTTTTTTTAAACATATCTACAGCTATAAATTTATCTGTTTTTTTCTTCCAGAAAGTGCTTATATTTAACTCTAGAGTGGGTGGTTCTATTATAAAACCTTCAGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGGTGTGCTTCAGCAGGAAAAGTTTTCCATTCTATGAGTGTTTAAAATAAAAGACTCATTGTTTAGAATTTAACCTTGAAATTGTTGTGGAATAATTAATACACTGATTGCTGATAAGATTTGACTGGCAGCTTGTGGCAGGAAATCATGGGCCACAATTCACTAGTTTAGCTCATTAAAAGAAAAAAATTCAAATTCAATCCCGATTATGAGATGCTAATGTGGTTTCTTTACCTTTTTCAGAACAGTTTCAAGTGGTATAAGTGGTGCAAGCTATTATACTGGAACCTTTAACACAGTTAATCGCTCTCCTGATGGCCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACCTGGGAGCCTGGGCAGGTTTAACTTCTGTATTTCTTTACTCTCTCTCTTCTTCTTCTGACTATGTTGCTTTGAACTGGTTGTGAAAGCAGGTTGCTCCTCGGTTGAGAGCTGAGTTTCTTGTTGGGCTTAATTACCACATTTATAAGTTATTAAAACTTGGCTTTTTCTGCAATTCCAGCCATTCTGGCAGCCACATAACAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGCCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGGTAGGTGAAATTGAGAGCTGTTCCTTTGTGTTTCTAGTCAAGCCACCCAATGGAAAATATGAAAAATGGTTTAGAGTTGCAATGTGGTTTGATTTTAACCTTTAACAAGAATCATTTCTTCCTCCTCCTACTAGTAAAGTTTTCATCATTAGACTTCTAGCTGCATAATAACTCAATAGTGGAATCCTATAAACCCATTGCTGTCTAGATATGCTATCATAAGAAACCTTAATATATACTTTTTTTTTCTCTTAATCCAAAATCATGAAAACATTGTAATTGAACAAAACTAGTTTTTCATCATCTTTAGACTAATCTTTCATCACATACTGTTGCTTCACAGAATCTCAGCTAGAGCTTTCAGCCAACTCCTGTTAAGTATTAACTGCTTGTTGAATTCAATATGTTTAATAAAACAGATAAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAGCCGAGGTTTTGGCATATTAGATGTCGGCTATCGTTCAAAGGCAAGTTCTTAAGATCATTTATAAATGCCTATACTTGTGCATCCTCATTCATTCTTGAAGACTCCCGCTGATATTGTGATTGAGATAGAAATATAATATTTGTTTGTTGCAAATACTTTTCTTTTTATTTCTGTGGCCTGGTCTGTTTAGTACCTAGTCAGACTTTGTAGGTAAATTATTTATTTGATTTGAAAACACAAAATGTTTCTGAAAAAAAAAAAAATCGACACAAAAGCCTTAATATGGTTATTTAGTTTTTCTATTAGACATGCCATGTGTTGAACTGAAACTAAACATACACTGTGCAGCACTATTTAGTTATCAGTATTCTAGCACCAAAATAAATGTGTGTGAGAGAGACAGAGAGGGCACAAATGATTAGATGAATGAAAGAGTGGTAGTTTGTCTTACTATTAGCAATTGATGTCTAGCAATGAATATATAGTCTTTGTGCTGAATTCCATATTCTTTTTAATTTATCATAAGCACCAGATAAAAATGAAGTCATCCCTTTTACCCAAATTGATCATTGCCCAGGTAGATTTATTTATTTATTTATTTTGTTTCTGGTTTGAGGTGTACAGGAAGAGGCTTGGGCAGCTGGGGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTGAAGTGAGTATGACCATAGTGTAAACTTGAGTTAGTTTTACAATTTGAATCTGAAATTACCTCATATTCAAGGACACTTTGGCATATGCTTACTATAAAGACTATCTCTTTATGGCTCTCCATAGGATGAATGAAGTGTAAAAAGAAAAATCAAAGCTCTCTACCCTGCTTCTTCTTGAGTGTTTAAAAGCATTTTTAAATTTTTTTTATAGTGTTTAGTTAGATGATTGAAAATGATTTTAACAATTTTTTAAACATTACAAAACACTTGGAAGTGCTGTAAAAGTACTTCTTTCAAAAGTATTTATAAAAGGAGTGCTTTCACTATTTTTTTTTTTTCCAAAGTCATCCCAAATTTACCTTTTAACCTAAAACTGATATCAGGCTTTGTTGCCAAAAAATGCCCAACACTTCCAATCATAATCAATATGGCTGCAAACACAATCAATTGTACTACAATTTTGCATAAAAAATTTAGGGCATTGAGTTTAGTAGTGAGTATGAGTTCTTTACTTTCAATTCACCTGCTTCACATATTCTCTCTTTTGATCTATTTACATCACCACAGGTTTATAAATGATAAGAAAGGTTTTGTGCTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGA

mRNA sequence

ATGGACCTCTCTCTTTGCTCCTTCCTCTCCTCGCCATTCCCTCACCTCCCTCTCTCAACCCAAGTTCAGCCTCGAGGTGTTAATTCTACCACTCCCAAAGCCTCTCTTCAGAATTCTTCCATCAATCGCCGGCAGTTCGTTGCTGAGACGGCAGCCGCGGTTTCTCTGTCGCTTTCTCCGTTGATTGCTCCCGTACAACCGGCGAAGTCCGAAGAAACTCTGTCGGAGTGGGAGAGGCTGTACCTCCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGATGATTTGGACCATGGATTCCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTCAAAGGAAAGGAGGGATGGATTGTTGGCAAACCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAGAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCAAGTGGTATAAGTGGTGCAAGCTATTATACTGGAACCTTTAACACAGTTAATCGCTCTCCTGATGGCCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACCTGGGAGCCTGGGCAGCCATTCTGGCAGCCACATAACAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGCCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGATAAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAGCCGAGGTTTTGGCATATTAGATGTCGGCTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGGGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTGAAGTTTATAAATGATAAGAAAGGTTTTGTGCTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGA

Coding sequence (CDS)

ATGGACCTCTCTCTTTGCTCCTTCCTCTCCTCGCCATTCCCTCACCTCCCTCTCTCAACCCAAGTTCAGCCTCGAGGTGTTAATTCTACCACTCCCAAAGCCTCTCTTCAGAATTCTTCCATCAATCGCCGGCAGTTCGTTGCTGAGACGGCAGCCGCGGTTTCTCTGTCGCTTTCTCCGTTGATTGCTCCCGTACAACCGGCGAAGTCCGAAGAAACTCTGTCGGAGTGGGAGAGGCTGTACCTCCCTATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGATGATTTGGACCATGGATTCCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTCAAAGGAAAGGAGGGATGGATTGTTGGCAAACCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAGAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCAAGTGGTATAAGTGGTGCAAGCTATTATACTGGAACCTTTAACACAGTTAATCGCTCTCCTGATGGCCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACCTGGGAGCCTGGGCAGCCATTCTGGCAGCCACATAACAGAGCTATTGCAAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGCCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGATAAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAGCCGAGGTTTTGGCATATTAGATGTCGGCTATCGTTCAAAGGAAGAGGCTTGGGCAGCTGGGGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTGAAGTTTATAAATGATAAGAAAGGTTTTGTGCTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGA

Protein sequence

MDLSLCSFLSSPFPHLPLSTQVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG
Homology
[Close]
BLAST of Lag0002713 vs. NCBI nr
Match: XP_038900067.1 (photosystem II stability/assembly factor HCF136, chloroplastic [Benincasa hispida])

HSP 1 Score: 745.7 bits (1924), Expect = 2.0e-211
Identity = 367/375 (97.87%), Postives = 373/375 (99.47%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           Q+QPR + STTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEE+LSEWERL
Sbjct: 25  QLQPRTLTSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEESLSEWERL 84

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 85  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 144

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 145 SISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 204

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 205 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 264

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV
Sbjct: 265 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 324

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG++WTRDKAADNIAANLYSVKFINDKK
Sbjct: 325 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGRSWTRDKAADNIAANLYSVKFINDKK 384

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 385 GFVLGNDGVLLQYLG 399

[Close]
BLAST of Lag0002713 vs. NCBI nr
Match: XP_022959584.1 (photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 740.0 bits (1909), Expect = 1.1e-209
Identity = 363/375 (96.80%), Postives = 372/375 (99.20%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           QVQPR VNS TPKAS++NSSINRR+FVAETAAAVSLSLSPLIAPV+PAKSEE LS+WERL
Sbjct: 29  QVQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERL 88

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 89  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 148

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISF+GKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 149 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 208

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 209 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 268

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPV
Sbjct: 269 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPV 328

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK
Sbjct: 329 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 388

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 389 GFVLGNDGVLLQYLG 403

[Close]
BLAST of Lag0002713 vs. NCBI nr
Match: KAG7025624.1 (Photosystem II stability/assembly factor, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 738.8 bits (1906), Expect = 2.4e-209
Identity = 362/375 (96.53%), Postives = 372/375 (99.20%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           Q+QPR VNS TPKAS++NSSINRR+FVAETAAAVSLSLSPLIAPV+PAKSEE LS+WERL
Sbjct: 29  QLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERL 88

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 89  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 148

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISF+GKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 149 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 208

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 209 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 268

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPV
Sbjct: 269 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPV 328

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK
Sbjct: 329 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 388

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 389 GFVLGNDGVLLQYLG 403

[Close]
BLAST of Lag0002713 vs. NCBI nr
Match: XP_023004561.1 (photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 737.3 bits (1902), Expect = 7.1e-209
Identity = 361/375 (96.27%), Postives = 372/375 (99.20%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           QVQP+ VNS TPKAS++NSSINRR+FVAETAAAVSLSLSPLIAPV+PAKSEE LS+WERL
Sbjct: 29  QVQPQTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERL 88

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 89  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 148

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISF+GKEGWIVGKPAILLYTSDAGESW+RIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 149 SISFQGKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 208

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 209 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 268

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPV
Sbjct: 269 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPV 328

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK
Sbjct: 329 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 388

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 389 GFVLGNDGVLLQYLG 403

[Close]
BLAST of Lag0002713 vs. NCBI nr
Match: XP_023514720.1 (photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 736.5 bits (1900), Expect = 1.2e-208
Identity = 361/375 (96.27%), Postives = 371/375 (98.93%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           Q+QPR VNS TPKAS++NSSINRR+FVAETAAAVSLSLSPLIAPV+PAKSEE LS+W RL
Sbjct: 29  QLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWARL 88

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 89  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 148

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISF+GKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 149 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 208

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 209 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 268

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPV
Sbjct: 269 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPV 328

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK
Sbjct: 329 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 388

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 389 GFVLGNDGVLLQYLG 403

[Close]
BLAST of Lag0002713 vs. ExPASy Swiss-Prot
Match: O82660 (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF136 PE=1 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 2.1e-179
Identity = 307/390 (78.72%), Postives = 352/390 (90.26%), Query Frame = 0 

Query: 8   FLSSPFPH--LPLSTQVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPV 67
           FLS    H  +P ++   P    S +P +S  + S +RR+ + + +AAVSLSLS ++   
Sbjct: 21  FLSQRISHRLIPKASSSPP---PSPSPSSSSSSLSFSRRELLYQ-SAAVSLSLSSIVG-- 80

Query: 68  QPAKSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPR 127
            PA+++E LSEWER++LPIDPGVVLLDIAFVPD+   GFLLGTRQT+LETKDGG TW PR
Sbjct: 81  -PARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPR 140

Query: 128 SIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIK 187
           SIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+IK
Sbjct: 141 SIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIK 200

Query: 188 ATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVN 247
           AT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ VN
Sbjct: 201 ATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVN 260

Query: 248 RSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFL 307
           RSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+L
Sbjct: 261 RSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYL 320

Query: 308 SKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADN 367
           SKGTGI+EEFEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAADN
Sbjct: 321 SKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADN 380

Query: 368 IAANLYSVKFINDKKGFVLGNDGVLLQYLG 396
           IAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 381 IAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]
BLAST of Lag0002713 vs. ExPASy Swiss-Prot
Match: Q5Z5A8 (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=HCF136 PE=3 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 4.4e-177
Identity = 310/407 (76.17%), Postives = 341/407 (83.78%), Query Frame = 0 

Query: 15  HLPLSTQVQPRGVNSTTPKASLQNSSINRRQFVAETA-AAVSLSLSPLIAPVQP---AKS 74
           HL L      R      P+A   + S  RR+F+A+TA A+ + ++ PL+ P  P   A  
Sbjct: 10  HLHLLLSSSRRRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQ 69

Query: 75  EETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSA 134
             +LSEWER+ LPIDPGVVLLDIAFVPDD  HGFLLGTRQTILETK+GG TW PRSIPSA
Sbjct: 70  PPSLSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSA 129

Query: 135 EEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEK 194
           E+EDFNYRFN++SF GKEGWI+GKPAILL+TSDAG+SWERIPLSAQLPG+MVYIKATGE+
Sbjct: 130 EDEDFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQ 189

Query: 195 SAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG 254
           SAEMVTDEGAIYVTSN+GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG
Sbjct: 190 SAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDG 249

Query: 255 RYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTG 314
           RYVAVSSRGNFYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKG+G
Sbjct: 250 RYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSG 309

Query: 315 ----------------------ISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLL 374
                                 I+E+FEE  VQSRGFGILDVGYRSK+EAWAAGGSGVLL
Sbjct: 310 FQFFYRGLNDAHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLL 369

Query: 375 KTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 396
           KTTNGGKTW RDKAADNIAANLYSVKF+ D KG+VLGNDGVLL+Y+G
Sbjct: 370 KTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416

[Close]
BLAST of Lag0002713 vs. ExPASy Swiss-Prot
Match: Q9AW48 (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta OX=55529 GN=hcf136 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 5.5e-95
Identity = 167/362 (46.13%), Postives = 243/362 (67.13%), Query Frame = 0 

Query: 41  INRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERLYLPIDPGVVLLDIAFVPDDL 100
           INR +F       ++  L P +  + P  +    + W ++ LP+D   VL DI F   + 
Sbjct: 42  INRTKF-------INYLLYPTLTSLYPKFTHANTTSWTKVDLPVDS--VLFDIEFTDPEC 101

Query: 101 DHGFLLGTRQTILETKDGGRTWAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILL 160
            HG+L+G++ T LET DGG TW PR+  + + +E+  YRF  ISF+G+EGW++GKPAI+L
Sbjct: 102 KHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIIL 161

Query: 161 YTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETV 220
           YT D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIYVT+N G NWKA V+ET+
Sbjct: 162 YTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVTNNAGRNWKAQVKETI 221

Query: 221 SATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAI 280
            +TLNRT+SSG+SGASY+TG    V R+ +G+Y+A+SSRGNFYLTWEPGQ FW P  R  
Sbjct: 222 DSTLNRTISSGVSGASYFTGNVINVIRNSEGKYLAISSRGNFYLTWEPGQDFWIPRARET 281

Query: 281 ARRIQNMGWRADG---GLWLLVRGGGLFLSKGT----GISE-EFEEVPVQSRGFGILDVG 340
           +RRIQ+MG+  +    G+W+  RGGGL +S        IS   FE + +++ G+GILD  
Sbjct: 282 SRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAA 341

Query: 341 YRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLL 394
           + + ++ W   G G++  +T+ GK WT+    D ++ NLY +KF+N+ KGF+LG++G+LL
Sbjct: 342 FVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLL 394

[Close]
BLAST of Lag0002713 vs. ExPASy Swiss-Prot
Match: P73069 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr2034 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 7.7e-81
Identity = 155/318 (48.74%), Postives = 202/318 (63.52%), Query Frame = 0 

Query: 77  WERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFN 136
           W+ + L  D      DIAF  +D +HG+L+GT++TI ET DGG TW  + I   EE+   
Sbjct: 40  WQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEK--- 99

Query: 137 YRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVT 196
             F+A+SF G EGWI GKP+ILL+T+D G++W RIPLS +LPG    I A G ++AEM+T
Sbjct: 100 ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMIT 159

Query: 197 DEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 256
           D GAIY T+N G NWKA V+  V                   G   T+ RS DGRYVAVS
Sbjct: 160 DLGAIYKTTNGGKNWKALVEGAV-------------------GVARTIQRSTDGRYVAVS 219

Query: 257 SRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFE 316
           +RGNFY TW PGQ  W PHNR  +RR+Q MG+  DG LWLL RGG L  S      E  +
Sbjct: 220 ARGNFYSTWAPGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSD 279

Query: 317 EVPVQSRG-FGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKF 376
            +  Q +G +G+LD+ +R+ EE W AG SG LL + +GG+TW +D   ++I ANLY V F
Sbjct: 280 VIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVF 332

Query: 377 INDKKGFVLGNDGVLLQY 394
           ++ +KGFVLG DG+LL+Y
Sbjct: 340 LSPEKGFVLGQDGILLKY 332

[Close]
BLAST of Lag0002713 vs. ExPASy Swiss-Prot
Match: Q8DI95 (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=tll1695 PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 9.4e-79
Identity = 149/343 (43.44%), Postives = 209/343 (60.93%), Query Frame = 0 

Query: 54  VSLSLSPLIAPVQPAKSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTIL 113
           VSLS   L  P          + WE + LP      +LD++F+  D  HG+L+G   T++
Sbjct: 30  VSLSTPALAIPAL------DYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLM 89

Query: 114 ETKDGGRTWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPL 173
           ET+DGG+TW PR++     +  +YRFN++SF+G EGWIVG+P I+L+T+D G+SW +IPL
Sbjct: 90  ETRDGGQTWEPRTLVL---DHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL 149

Query: 174 SAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISG 233
             +LPG    IKA G  SAEM+T+ GAIY T + G NW+A VQE +              
Sbjct: 150 DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAI-------------- 209

Query: 234 ASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGG 293
                G    +NRSP G YVAVSSRG+FY TWEPGQ  W+PHNR  +RR+ NMG+  DG 
Sbjct: 210 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR 269

Query: 294 LWLLVRGGGLFLSKGTGISEEFEEV--PVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTT 353
           LW++V GG +  S     SE + E+  P++    G LD+ YR+  E W AGG+G LL + 
Sbjct: 270 LWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQ 329

Query: 354 NGGKTWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYL 395
           +GG+TW +D     + +N Y + F +  +GF+LG  G+LL+Y+
Sbjct: 330 DGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339

[Close]
BLAST of Lag0002713 vs. ExPASy TrEMBL
Match: A0A6J1H8H0 (Photosystem II stability/assembly factor OS=Cucurbita moschata OX=3662 GN=LOC111460613 PE=3 SV=1)

HSP 1 Score: 740.0 bits (1909), Expect = 5.3e-210
Identity = 363/375 (96.80%), Postives = 372/375 (99.20%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           QVQPR VNS TPKAS++NSSINRR+FVAETAAAVSLSLSPLIAPV+PAKSEE LS+WERL
Sbjct: 29  QVQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERL 88

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 89  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 148

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISF+GKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 149 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 208

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 209 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 268

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPV
Sbjct: 269 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPV 328

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK
Sbjct: 329 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 388

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 389 GFVLGNDGVLLQYLG 403

[Close]
BLAST of Lag0002713 vs. ExPASy TrEMBL
Match: A0A6J1KSF8 (Photosystem II stability/assembly factor OS=Cucurbita maxima OX=3661 GN=LOC111497826 PE=3 SV=1)

HSP 1 Score: 737.3 bits (1902), Expect = 3.4e-209
Identity = 361/375 (96.27%), Postives = 372/375 (99.20%), Query Frame = 0 

Query: 21  QVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPAKSEETLSEWERL 80
           QVQP+ VNS TPKAS++NSSINRR+FVAETAAAVSLSLSPLIAPV+PAKSEE LS+WERL
Sbjct: 29  QVQPQTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERL 88

Query: 81  YLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 140
           YLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN
Sbjct: 89  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 148

Query: 141 AISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 200
           +ISF+GKEGWIVGKPAILLYTSDAGESW+RIPLSAQLPGDMVYIKATGEKSAEMVTDEGA
Sbjct: 149 SISFQGKEGWIVGKPAILLYTSDAGESWDRIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 208

Query: 201 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 260
           IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 209 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 268

Query: 261 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPV 320
           FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPV
Sbjct: 269 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPV 328

Query: 321 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 380
           QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK
Sbjct: 329 QSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKK 388

Query: 381 GFVLGNDGVLLQYLG 396
           GFVLGNDGVLLQYLG
Sbjct: 389 GFVLGNDGVLLQYLG 403

[Close]
BLAST of Lag0002713 vs. ExPASy TrEMBL
Match: A0A0A0K5Y1 (Photosystem II stability/assembly factor OS=Cucumis sativus OX=3659 GN=Csa_7G420730 PE=3 SV=1)

HSP 1 Score: 736.5 bits (1900), Expect = 5.9e-209
Identity = 366/389 (94.09%), Postives = 376/389 (96.66%), Query Frame = 0 

Query: 8   FLSSPFPHLPLS-TQVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQ 67
           F SS  P   LS  Q+ PR ++STTPKASL NSSINRR FVA+TAAAVSLSLSP IAPVQ
Sbjct: 18  FASSTSPRHSLSQPQLLPRTLSSTTPKASLHNSSINRRHFVADTAAAVSLSLSPFIAPVQ 77

Query: 68  PAKSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRS 127
           PAKSEE+LSEWERLYLPIDPGVVLLDIAFVPDD++HGFLLGTRQTILETKDGGRTWAPRS
Sbjct: 78  PAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLLGTRQTILETKDGGRTWAPRS 137

Query: 128 IPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKA 187
           IPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKA
Sbjct: 138 IPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKA 197

Query: 188 TGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNR 247
           TGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNR
Sbjct: 198 TGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNR 257

Query: 248 SPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLS 307
           SPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLS
Sbjct: 258 SPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLS 317

Query: 308 KGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNI 367
           KGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG++WTRDKAADNI
Sbjct: 318 KGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGRSWTRDKAADNI 377

Query: 368 AANLYSVKFINDKKGFVLGNDGVLLQYLG 396
           AANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 378 AANLYSVKFINDKKGFVLGNDGVLLQYLG 406

[Close]
BLAST of Lag0002713 vs. ExPASy TrEMBL
Match: A0A5D3CGP8 (Photosystem II stability/assembly factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00160 PE=3 SV=1)

HSP 1 Score: 735.3 bits (1897), Expect = 1.3e-208
Identity = 364/388 (93.81%), Postives = 374/388 (96.39%), Query Frame = 0 

Query: 8   FLSSPFPHLPLSTQVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQP 67
           F SS   H     Q+ PR ++ST+PKASL NSSINRRQFVA+TAAAVSLSLSP IAPVQP
Sbjct: 18  FASSSPRHSLSQPQLLPRTISSTSPKASLHNSSINRRQFVADTAAAVSLSLSPFIAPVQP 77

Query: 68  AKSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSI 127
           AKSEE+LSEWERLYLPIDPGVVLLDIAFVPDDL+HGFLLGTRQTILETKDGGRTWAPRSI
Sbjct: 78  AKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSI 137

Query: 128 PSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKAT 187
           PSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKAT
Sbjct: 138 PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKAT 197

Query: 188 GEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRS 247
           GEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRS
Sbjct: 198 GEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRS 257

Query: 248 PDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSK 307
           PDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSK
Sbjct: 258 PDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSK 317

Query: 308 GTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIA 367
           GTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGG++WTRDKAADNIA
Sbjct: 318 GTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGRSWTRDKAADNIA 377

Query: 368 ANLYSVKFINDKKGFVLGNDGVLLQYLG 396
           ANLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 378 ANLYSVKFINDKKGFVLGNDGVLLQYLG 405

[Close]
BLAST of Lag0002713 vs. ExPASy TrEMBL
Match: A0A6J1DGV7 (Photosystem II stability/assembly factor OS=Momordica charantia OX=3673 GN=LOC111020948 PE=3 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 2.2e-208
Identity = 364/387 (94.06%), Postives = 373/387 (96.38%), Query Frame = 0 

Query: 9   LSSPFPHLPLSTQVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPA 68
           LS P P      Q QPR   ++TP+ASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPA
Sbjct: 20  LSQPQP------QPQPRTFTTSTPRASLQNSSINRRQFVAETAAAVSLSLSPLIAPVQPA 79

Query: 69  KSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRSIP 128
           KSEE LSEWERL+LPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPR+IP
Sbjct: 80  KSEEALSEWERLFLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPRTIP 139

Query: 129 SAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATG 188
           SAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATG
Sbjct: 140 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATG 199

Query: 189 EKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSP 248
           EKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSP
Sbjct: 200 EKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSP 259

Query: 249 DGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKG 308
           DGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKG
Sbjct: 260 DGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKG 319

Query: 309 TGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAA 368
           TGISEEFEEVPVQSRGFGILDVGYRS EEAWAAGGSG+LLKTTNGG+TW+RDKAADNIAA
Sbjct: 320 TGISEEFEEVPVQSRGFGILDVGYRSTEEAWAAGGSGILLKTTNGGRTWSRDKAADNIAA 379

Query: 369 NLYSVKFINDKKGFVLGNDGVLLQYLG 396
           NLYSVKFINDKKGFVLGNDGVLLQYLG
Sbjct: 380 NLYSVKFINDKKGFVLGNDGVLLQYLG 400

[Close]
BLAST of Lag0002713 vs. TAIR 10
Match: AT5G23120.1 (photosystem II stability/assembly factor, chloroplast (HCF136) )

HSP 1 Score: 629.8 bits (1623), Expect = 1.5e-180
Identity = 307/390 (78.72%), Postives = 352/390 (90.26%), Query Frame = 0 

Query: 8   FLSSPFPH--LPLSTQVQPRGVNSTTPKASLQNSSINRRQFVAETAAAVSLSLSPLIAPV 67
           FLS    H  +P ++   P    S +P +S  + S +RR+ + + +AAVSLSLS ++   
Sbjct: 21  FLSQRISHRLIPKASSSPP---PSPSPSSSSSSLSFSRRELLYQ-SAAVSLSLSSIVG-- 80

Query: 68  QPAKSEETLSEWERLYLPIDPGVVLLDIAFVPDDLDHGFLLGTRQTILETKDGGRTWAPR 127
            PA+++E LSEWER++LPIDPGVVLLDIAFVPD+   GFLLGTRQT+LETKDGG TW PR
Sbjct: 81  -PARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPR 140

Query: 128 SIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIK 187
           SIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+IK
Sbjct: 141 SIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIK 200

Query: 188 ATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVN 247
           AT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ VN
Sbjct: 201 ATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVN 260

Query: 248 RSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFL 307
           RSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL+L
Sbjct: 261 RSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYL 320

Query: 308 SKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADN 367
           SKGTGI+EEFEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAADN
Sbjct: 321 SKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADN 380

Query: 368 IAANLYSVKFINDKKGFVLGNDGVLLQYLG 396
           IAANLY+VKF++DKKGFVLGNDGVLL+Y+G
Sbjct: 381 IAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

The following BLAST results are available for this feature:
BLAST of Lag0002713 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900067.12.0e-21197.87photosystem II stability/assembly factor HCF136, chloroplastic [Benincasa hispid... [more]
XP_022959584.11.1e-20996.80photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita m... [more]
KAG7025624.12.4e-20996.53Photosystem II stability/assembly factor, chloroplastic [Cucurbita argyrosperma ... [more]
XP_023004561.17.1e-20996.27photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita m... [more]
XP_023514720.11.2e-20896.27photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita p... [more]
BLAST of Lag0002713 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O826602.1e-17978.72Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis th... [more]
Q5Z5A84.4e-17776.17Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa s... [more]
Q9AW485.5e-9546.13Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia the... [more]
P730697.7e-8148.74Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN... [more]
Q8DI959.4e-7943.44Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=t... [more]
BLAST of Lag0002713 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H8H05.3e-21096.80Photosystem II stability/assembly factor OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1KSF83.4e-20996.27Photosystem II stability/assembly factor OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A0A0K5Y15.9e-20994.09Photosystem II stability/assembly factor OS=Cucumis sativus OX=3659 GN=Csa_7G420... [more]
A0A5D3CGP81.3e-20893.81Photosystem II stability/assembly factor OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1DGV72.2e-20894.06Photosystem II stability/assembly factor OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Lag0002713 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G23120.11.5e-18078.72photosystem II stability/assembly factor, chloroplast (HCF136) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016705Photosynthesis system II assembly factor Ycf48/Hcf136PIRSFPIRSF017875Photosystem_II_Ycf48-likecoord: 37..395
e-value: 1.1E-147
score: 489.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 104..252
e-value: 3.7E-8
score: 34.6
IPR028203Photosynthesis system II assembly factor Ycf48/Hcf136-like domainPFAMPF14870PSII_BNRcoord: 72..393
e-value: 2.5E-124
score: 414.5
NoneNo IPR availablePANTHERPTHR47199PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTICcoord: 35..395
NoneNo IPR availableSUPERFAMILY110296Oligoxyloglucan reducing end-specific cellobiohydrolasecoord: 77..394

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002713.1Lag0002713.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding