Lag0002687 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002687
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4: 44839562 .. 44839918 (-)
RNA-Seq Expression	Lag0002687
Synteny	Lag0002687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATTCAACTTTTGAAAGACAAACTTTAGAAATTATCACACCTCCAGAGCCAAAGTTCGTGAATCCTGGAAGCAAAACTGCCTCAACACCCAAATTGGATGAAGAGAATTATTTGATGTGGAAATTTCAAGTCCTAATCACACTGAGAGGCCATGGATTGCAGAAATTCATCGATCCTGATTATGATGTTCCAAGAAAATTTCTGACTTCTACTGATGAATCTTCTTCAACAAAGATTTCCAATCCCGAATATGAGTATTGGATTCCTCAAGATAGTTTAATCACCGCCTGGTTTCTTGGTTCGATATCACCGGCCATTGTTGCAGAGTTACTCGATTGTCAATCTTCTTGA

mRNA sequence

ATGGGAGATTCAACTTTTGAAAGACAAACTTTAGAAATTATCACACCTCCAGAGCCAAAGTTCGTGAATCCTGGAAGCAAAACTGCCTCAACACCCAAATTGGATGAAGAGAATTATTTGATGTGGAAATTTCAAGTCCTAATCACACTGAGAGGCCATGGATTGCAGAAATTCATCGATCCTGATTATGATGTTCCAAGAAAATTTCTGACTTCTACTGATGAATCTTCTTCAACAAAGATTTCCAATCCCGAATATGAGTATTGGATTCCTCAAGATAGTTTAATCACCGCCTGGTTTCTTGGTTCGATATCACCGGCCATTGTTGCAGAGTTACTCGATTGTCAATCTTCTTGA

Coding sequence (CDS)

ATGGGAGATTCAACTTTTGAAAGACAAACTTTAGAAATTATCACACCTCCAGAGCCAAAGTTCGTGAATCCTGGAAGCAAAACTGCCTCAACACCCAAATTGGATGAAGAGAATTATTTGATGTGGAAATTTCAAGTCCTAATCACACTGAGAGGCCATGGATTGCAGAAATTCATCGATCCTGATTATGATGTTCCAAGAAAATTTCTGACTTCTACTGATGAATCTTCTTCAACAAAGATTTCCAATCCCGAATATGAGTATTGGATTCCTCAAGATAGTTTAATCACCGCCTGGTTTCTTGGTTCGATATCACCGGCCATTGTTGCAGAGTTACTCGATTGTCAATCTTCTTGA

Protein sequence

MGDSTFERQTLEIITPPEPKFVNPGSKTASTPKLDEENYLMWKFQVLITLRGHGLQKFIDPDYDVPRKFLTSTDESSSTKISNPEYEYWIPQDSLITAWFLGSISPAIVAELLDCQSS

Homology

[Close]

BLAST of Lag0002687 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-21
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 22  VNPGSKTASTPKLDEENYLMWKFQVLITLRGHGLQKFIDPDYDVPRKFLTSTDESSSTKI 81
           VNPG+K  ST KL++EN+L+W+ Q+   L+GHGL KFIDP+  +P +F+ S DESSS   
Sbjct: 20  VNPGNK-ISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQSADESSSVPS 79

Query: 82  SNPEYEYWIPQDSLITAWFLGSISPAIVAELLDCQSS 119
            NPE+  W  QD LIT+W LGS+S  I++++L+C+++
Sbjct: 80  PNPEFINWKRQDKLITSWLLGSMSEEILSQMLECETA 115

[Close]

BLAST of Lag0002687 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-18
Identity = 48/101 (47.52%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 20  KFVNPGSKTASTPKLDEENYLMWKFQVLITLRGHGLQKFIDPDYDVPRKFL-TSTDESSS 79
           K +NPGSK  S  +L+++N L+WKFQ+   L+G+GL+ +ID + D P +F+ T+ DESSS
Sbjct: 20  KTINPGSK-VSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDESSS 79

Query: 80  TKI-SNPEYEYWIPQDSLITAWFLGSISPAIVAELLDCQSS 119
           + +  NP Y  WI QD LI+AW LGS++  I++++LDC+S+
Sbjct: 80  SSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSA 119

[Close]

BLAST of Lag0002687 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 26  SKTASTPKLDEENYLMWKFQVLITLRGHGLQKFIDPDYDVPRKFLTSTDES--SSTKISN 85
           S   S  KL ++N+L+WKFQ+L  L  + L+ F++ + + P K+L ST  S  S+T+  N
Sbjct: 26  SNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSASATRTPN 85

Query: 86  PEYEYWIPQDSLITAWFLGSISPAIVAELLDCQSS 119
           P Y+ W  QD LI++W LGS+S  I+ ++L C+S+
Sbjct: 86  PTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSA 120

[Close]

BLAST of Lag0002687 vs. NCBI nr
Match: TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 26  SKTASTPKLDEENYLMWKFQVLITLRGHGLQKFIDPDYDVPRKFLTSTDES--SSTKISN 85
           S   S  KL ++N+L+WKFQ+L  L  + L+ F++ + + P K+L ST  S  S+T+  N
Sbjct: 26  SNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSASATRTPN 85

Query: 86  PEYEYWIPQDSLITAWFLGSISPAIVAELLDCQSS 119
           P Y+ W  QD LI++W LGS+S  I+ ++L C+S+
Sbjct: 86  PTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSA 120

[Close]

BLAST of Lag0002687 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-13
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 30  STPKLDEENYLMWKFQVLITLRGHGLQKFIDPDYDVPRKFLTSTDES--SSTKISNPEYE 89
           S  KL ++N+L+WKFQ+L  L  + L+ F + + + P K+LTST  S  S+T+  NPEY+
Sbjct: 25  SLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSSSTSATRTPNPEYK 84

Query: 90  YWIPQDSLITAWFLGSISPAIVAELLDCQSS 119
            W   + LI+ W LGS+S  I+ +++ C+S+
Sbjct: 85  VWKRHNRLISPWLLGSMSEEILNQMVHCKSA 115

The following BLAST results are available for this feature:

BLAST of Lag0002687 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159146.1	7.5e-21	50.52	uncharacterized protein LOC111025572 [Momordica charantia]	[more]
XP_022154487.1	5.9e-18	47.52	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0067213.1	1.5e-13	41.05	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
TYK18917.1	1.5e-13	41.05	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0053143.1	7.5e-13	40.66	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0002687 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002687.1	Lag0002687.1	mRNA