Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCATCTGGGATTTTCGAAGAGACAATCTCTACGAGCCCCACGAAACCTAAGATTGTAAAGGATGAGAAATTTTCAAGTTCACCTGTCCTACGGTACGTCCCTTTATCTCGATGTAAAAAAGGTGAAGAATCACCTTTCACAGAATGTTCGGAAAACATAAAGGTTTGTGACATTGAAATTTTGAAAGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTAAGGAGACCTGAGAATGACCAAATGAAGATGGCTTTGCTTGAGAGGCGGATGAAAGATGGGTTTGACCCTAAGACATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCATACTGAGTTTAAAATTCTAAGGATCTTTGATGGAAGACCTGAGCTTTCTTCGACACAAAAGAAGCTTCTAATGGAAGGTTATACTCTTCCTACATCGAGAAAAGGCCTTAGATATAAATCACTTGAGCCAGTTCACATAACAAAAATAGGGAAATTGAAAGTGACATACACAAATCATATAACGGTAGAGGAAGCTGACGACTCGAAAGAAGAACAAAGTTCGACCAACGAACTTCTGTTTTTAGGCACATCAGAGCGTCGGTTGCTCATGCCTTAG
mRNA sequence
ATGTTGGCATCTGGGATTTTCGAAGAGACAATCTCTACGAGCCCCACGAAACCTAAGATTGTAAAGGATGAGAAATTTTCAAGTTCACCTGTCCTACGGTACGTCCCTTTATCTCGATGTAAAAAAGGTGAAGAATCACCTTTCACAGAATGTTCGGAAAACATAAAGGTTTGTGACATTGAAATTTTGAAAGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTAAGGAGACCTGAGAATGACCAAATGAAGATGGCTTTGCTTGAGAGGCGGATGAAAGATGGGTTTGACCCTAAGACATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCATACTGAGTTTAAAATTCTAAGGATCTTTGATGGAAGACCTGAGCTTTCTTCGACACAAAAGAAGCTTCTAATGGAAGGTTATACTCTTCCTACATCGAGAAAAGGCCTTAGATATAAATCACTTGAGCCAGTTCACATAACAAAAATAGGGAAATTGAAAGTGACATACACAAATCATATAACGGTAGAGGAAGCTGACGACTCGAAAGAAGAACAAAGTTCGACCAACGAACTTCTGTTTTTAGGCACATCAGAGCGTCGGTTGCTCATGCCTTAG
Coding sequence (CDS)
ATGTTGGCATCTGGGATTTTCGAAGAGACAATCTCTACGAGCCCCACGAAACCTAAGATTGTAAAGGATGAGAAATTTTCAAGTTCACCTGTCCTACGGTACGTCCCTTTATCTCGATGTAAAAAAGGTGAAGAATCACCTTTCACAGAATGTTCGGAAAACATAAAGGTTTGTGACATTGAAATTTTGAAAGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTAAGGAGACCTGAGAATGACCAAATGAAGATGGCTTTGCTTGAGAGGCGGATGAAAGATGGGTTTGACCCTAAGACATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCATACTGAGTTTAAAATTCTAAGGATCTTTGATGGAAGACCTGAGCTTTCTTCGACACAAAAGAAGCTTCTAATGGAAGGTTATACTCTTCCTACATCGAGAAAAGGCCTTAGATATAAATCACTTGAGCCAGTTCACATAACAAAAATAGGGAAATTGAAAGTGACATACACAAATCATATAACGGTAGAGGAAGCTGACGACTCGAAAGAAGAACAAAGTTCGACCAACGAACTTCTGTTTTTAGGCACATCAGAGCGTCGGTTGCTCATGCCTTAG
Protein sequence
MLASGIFEETISTSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNELLFLGTSERRLLMP
Homology
BLAST of Lag0002659 vs. NCBI nr
Match:
XP_031737045.1 (uncharacterized protein LOC116402134 [Cucumis sativus])
HSP 1 Score: 208.8 bits (530), Expect = 4.7e-50
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0
Query: 13 TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLT 72
TS TK I+KDE +++PVLRYVPLSR KKG ESPF E + +KV DIEI+KESFTTPLT
Sbjct: 311 TSSTKGMILKDENAANTPVLRYVPLSRRKKG-ESPFMESPKGLKVGDIEIIKESFTTPLT 370
Query: 73 KITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRPE 132
KI KQEV+ D ++ L +RR KDGFDPK YKL+AKAGYDFT HTEFK L I D RPE
Sbjct: 371 KIAKQEVK---VDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHD-RPE 430
Query: 133 LSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSS 192
LSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV NHIT+EE DD+ + +
Sbjct: 431 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKEG 487
Query: 193 TNE 196
N+
Sbjct: 491 DNQ 487
BLAST of Lag0002659 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 208.8 bits (530), Expect = 4.7e-50
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0
Query: 13 TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLT 72
TS TK I+KDE +++PVLRYVPLSR KKG ESPF E + +KV DIEI+KESFTTPLT
Sbjct: 936 TSSTKGMILKDENAANTPVLRYVPLSRRKKG-ESPFMESPKGLKVGDIEIIKESFTTPLT 995
Query: 73 KITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRPE 132
KI KQEV+ D ++ L +RR KDGFDPK YKL+AKAGYDFT HTEFK L I D RPE
Sbjct: 996 KIAKQEVK---VDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHD-RPE 1055
Query: 133 LSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSS 192
LSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV NHIT+EE DD+ + +
Sbjct: 1056 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKEG 1112
Query: 193 TNE 196
N+
Sbjct: 1116 DNQ 1112
BLAST of Lag0002659 vs. NCBI nr
Match:
XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])
HSP 1 Score: 208.8 bits (530), Expect = 4.7e-50
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0
Query: 13 TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLT 72
TS TK I+KDE +++PVLRYVPLSR KKG ESPF E + +KV DIEI+KESFTTPLT
Sbjct: 311 TSSTKGMILKDENAANTPVLRYVPLSRRKKG-ESPFMESPKGLKVGDIEIIKESFTTPLT 370
Query: 73 KITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRPE 132
KI KQEV+ D ++ L +RR KDGFDPK YKL+AKAGYDFT HTEFK L I D RPE
Sbjct: 371 KIAKQEVK---VDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHD-RPE 430
Query: 133 LSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSS 192
LSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV NHIT+EE DD+ + +
Sbjct: 431 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKEG 487
Query: 193 TNE 196
N+
Sbjct: 491 DNQ 487
BLAST of Lag0002659 vs. NCBI nr
Match:
XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])
HSP 1 Score: 208.8 bits (530), Expect = 4.7e-50
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0
Query: 13 TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLT 72
TS TK I+KDE +++PVLRYVPLSR KKG ESPF E + +KV DIEI+KESFTTPLT
Sbjct: 936 TSSTKGMILKDENAANTPVLRYVPLSRRKKG-ESPFMESPKGLKVGDIEIIKESFTTPLT 995
Query: 73 KITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRPE 132
KI KQEV+ D ++ L +RR KDGFDPK YKL+AKAGYDFT HTEFK L I D RPE
Sbjct: 996 KIAKQEVK---VDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHD-RPE 1055
Query: 133 LSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSS 192
LSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV NHIT+EE DD+ + +
Sbjct: 1056 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKEG 1112
Query: 193 TNE 196
N+
Sbjct: 1116 DNQ 1112
BLAST of Lag0002659 vs. NCBI nr
Match:
XP_031740568.1 (uncharacterized protein LOC116403508 [Cucumis sativus])
HSP 1 Score: 208.8 bits (530), Expect = 4.7e-50
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0
Query: 13 TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLT 72
TS TK I+KDE +++PVLRYVPLSR KKG ESPF E + +KV DIEI+KESFTTPLT
Sbjct: 936 TSSTKGMILKDENAANTPVLRYVPLSRRKKG-ESPFMESPKGLKVGDIEIIKESFTTPLT 995
Query: 73 KITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRPE 132
KI KQEV+ D ++ L +RR KDGFDPK YKL+AKAGYDFT HTEFK L I D RPE
Sbjct: 996 KIAKQEVK---VDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHD-RPE 1055
Query: 133 LSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSS 192
LSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV NHIT+EE DD+ + +
Sbjct: 1056 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKEG 1112
Query: 193 TNE 196
N+
Sbjct: 1116 DNQ 1112
BLAST of Lag0002659 vs. ExPASy TrEMBL
Match:
A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 2.3e-50
Identity = 112/182 (61.54%), Postives = 142/182 (78.02%), Query Frame = 0
Query: 12 STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPL 71
ST+ K I+ DEK S+ P+LRYVPLSR KKG ESPF E + +KV +IE+LKESFTTPL
Sbjct: 315 STNTAKSVILMDEKTSNPPILRYVPLSRRKKG-ESPFVESPQGLKVGEIEVLKESFTTPL 374
Query: 72 TKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRP 131
TKITKQE++ D + +L +RR KDGFDPK YKL+AKAGYDFTTHTEFK L+I++ +P
Sbjct: 375 TKITKQEIK---IDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIYE-QP 434
Query: 132 ELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQS 191
+LSSTQKKLL EG+ +P SRKGL YKS EP+ IT+ GK KV +NHIT++EAD +E++
Sbjct: 435 KLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKEADSMEEKEG 491
Query: 192 ST 194
+
Sbjct: 495 DS 491
BLAST of Lag0002659 vs. ExPASy TrEMBL
Match:
A0A5A7UEC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00760 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 5.0e-50
Identity = 112/183 (61.20%), Postives = 140/183 (76.50%), Query Frame = 0
Query: 11 ISTSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTP 70
+STS K I+ DEK S+ P+LRYVPLSR KKG ESPF E + +KV DIE+LKESFTTP
Sbjct: 161 VSTSTAKSVILMDEKTSNPPILRYVPLSRRKKG-ESPFVESPQGLKVGDIEVLKESFTTP 220
Query: 71 LTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGR 130
LTKI K+E++ D + +L +RR KDGFDPK YKL+AKAGYDF THTEFKIL+I + +
Sbjct: 221 LTKINKKEIK---IDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFITHTEFKILKIHE-Q 280
Query: 131 PELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQ 190
P+LSSTQKKLL EG+ +P SRKGL YKS EP+ IT+ GK KV +NHITV+E D +E++
Sbjct: 281 PKLSSTQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKE 338
Query: 191 SST 194
+
Sbjct: 341 DDS 338
BLAST of Lag0002659 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 206.8 bits (525), Expect = 8.6e-50
Identity = 113/182 (62.09%), Postives = 139/182 (76.37%), Query Frame = 0
Query: 12 STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPL 71
STS K IV DEK S+ P+LRYVPLSR KKG ESPF E + +KV DIE+LKESFTTPL
Sbjct: 713 STSTAKSVIVMDEKTSNPPILRYVPLSRRKKG-ESPFVEFPQGLKVGDIEVLKESFTTPL 772
Query: 72 TKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRP 131
TKITKQE++ D ++ +L +RR KDGFDPK YK +AKAGYDFTTHTEFK L+I + +P
Sbjct: 773 TKITKQEIK---IDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHE-QP 832
Query: 132 ELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQS 191
+LSSTQKKLL EG+ +P SRKGL YK EP+ IT+ GK KV +NHITV+E D +E++
Sbjct: 833 KLSSTQKKLLREGHAIPMSRKGLGYKPPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEG 889
Query: 192 ST 194
+
Sbjct: 893 DS 889
BLAST of Lag0002659 vs. ExPASy TrEMBL
Match:
A0A5A7TH79 (Gypsy-like retrotransposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00390 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 113/182 (62.09%), Postives = 139/182 (76.37%), Query Frame = 0
Query: 12 STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPL 71
STS TK I+ DEK S+ P+LRYVPLSR KKG ESPF E + +KV DIE+LKESFTTPL
Sbjct: 124 STSTTKSVILMDEKTSNPPILRYVPLSRRKKG-ESPFVESPQGLKVGDIEVLKESFTTPL 183
Query: 72 TKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRP 131
TKITKQ ++ D ++ +L +RR KDGFDPK YKL+AKAGYDFTTHTE K L+I + +P
Sbjct: 184 TKITKQAIK---IDLIEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTENKSLKIHE-QP 243
Query: 132 ELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQS 191
+LSSTQKKLL EG+ +P SRKGL YK EP+HITK GK KV N+ITV+E D +E++
Sbjct: 244 KLSSTQKKLLREGHAIPMSRKGLGYKLPEPIHITKTGKEKVVDNNYITVKEVDSMEEKEG 300
Query: 192 ST 194
+
Sbjct: 304 DS 300
BLAST of Lag0002659 vs. ExPASy TrEMBL
Match:
A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)
HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 110/179 (61.45%), Postives = 134/179 (74.86%), Query Frame = 0
Query: 12 STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPL 71
STS K I+ DEK S+ P+LRYVPLSRCKKG ESPF + + +KV DIE+LKESFTTP
Sbjct: 726 STSTRKSMILMDEKTSNPPILRYVPLSRCKKG-ESPFVKSPQGLKVGDIEVLKESFTTPF 785
Query: 72 TKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAGYDFTTHTEFKILRIFDGRP 131
TKITKQE++ D + +L + KDGFDPK YKL+AK GYDFTTH EFK L+I + +P
Sbjct: 786 TKITKQEIK---IDLTEASLPQSWTKDGFDPKAYKLMAKVGYDFTTHIEFKSLKIHE-QP 845
Query: 132 ELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQ 191
+LSSTQKKLL EG+ +P SRKGL YKS EP+ IT+ GK KV NHITV+E D KE++
Sbjct: 846 KLSSTQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKE 899
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UD46 | 2.3e-50 | 61.54 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UEC9 | 5.0e-50 | 61.20 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BY54 | 8.6e-50 | 62.09 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7TH79 | 1.1e-49 | 62.09 | Gypsy-like retrotransposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7TJZ7 | 1.2e-48 | 61.45 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
