Lag0002646 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002646
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome c oxidase subunit 5C-like
Location	chr4: 44502001 .. 44502394 (+)
RNA-Seq Expression	Lag0002646
Synteny	Lag0002646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGTCTTCATTGAACTTGCCCTTGTCCTTGCAAATAGTTCAGCACTATGTTGTTGTGCTTTCATGGTGTTGGGTAGCAAATATTATGTAAGAAAGTAGAAAATATTATGTGGTTAGGTCTACCTGTTCTTATAATTGTTCATTTTTTATCTCTCGGGCAGATTTTTCTTATCATTTTCAAACTAGAAAAGCAAATGGCTGCTGGTAGGGTGGCTCACGTCACACTTAAAGGACCAAGTGTCGTCAAGGAGATATTGACAGGAATGGGACTTGCCTTGTTTGCTGGGAGCTTTTGGAAAATGCATCAATGGAATGAGCAGAGGAAAGTGAGAGCTTTCTACGATCTACTGGAGAAGGGTGAGATCGGTGTTGTTGTTGATGAAGAATAG

mRNA sequence

ATGAATTGGTCTTCATTGAACTTGCCCTTGTCCTTGCAAATAGTTCAGCACTATGTTGTTGTGCTTTCATGGTGTTGGATTTTTCTTATCATTTTCAAACTAGAAAAGCAAATGGCTGCTGGTAGGGTGGCTCACGTCACACTTAAAGGACCAAGTGTCGTCAAGGAGATATTGACAGGAATGGGACTTGCCTTGTTTGCTGGGAGCTTTTGGAAAATGCATCAATGGAATGAGCAGAGGAAAGTGAGAGCTTTCTACGATCTACTGGAGAAGGGTGAGATCGGTGTTGTTGTTGATGAAGAATAG

Coding sequence (CDS)

ATGAATTGGTCTTCATTGAACTTGCCCTTGTCCTTGCAAATAGTTCAGCACTATGTTGTTGTGCTTTCATGGTGTTGGATTTTTCTTATCATTTTCAAACTAGAAAAGCAAATGGCTGCTGGTAGGGTGGCTCACGTCACACTTAAAGGACCAAGTGTCGTCAAGGAGATATTGACAGGAATGGGACTTGCCTTGTTTGCTGGGAGCTTTTGGAAAATGCATCAATGGAATGAGCAGAGGAAAGTGAGAGCTTTCTACGATCTACTGGAGAAGGGTGAGATCGGTGTTGTTGTTGATGAAGAATAG

Protein sequence

MNWSSLNLPLSLQIVQHYVVVLSWCWIFLIIFKLEKQMAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVVVDEE

Homology

[Close]

BLAST of Lag0002646 vs. NCBI nr
Match: KAE8646364.1 (hypothetical protein Csa_016441 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 28  FLIIFKLEKQMAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYD 87
           FL +FK EKQMAAGRVAHVTL+GPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYD
Sbjct: 38  FLTVFKREKQMAAGRVAHVTLQGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYD 97

Query: 88  LLEKGEIGVVVDEE 102
           LLEKGEI VVVDEE
Sbjct: 98  LLEKGEISVVVDEE 111

[Close]

BLAST of Lag0002646 vs. NCBI nr
Match: KAG6593239.1 (putative cytochrome c oxidase subunit 5C-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 6.4e-29
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 28  FLIIFKLEKQMAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYD 87
           F  +F+ EKQMAAG+VAHVTLKGPSVVKEILT MG+ALFAGSFWKMHQWNEQRKVRAFYD
Sbjct: 85  FRTVFEQEKQMAAGKVAHVTLKGPSVVKEILTAMGVALFAGSFWKMHQWNEQRKVRAFYD 144

Query: 88  LLEKGEIGVVVDEE 102
           LLEKGEIGVVVDEE
Sbjct: 145 LLEKGEIGVVVDEE 158

[Close]

BLAST of Lag0002646 vs. NCBI nr
Match: KAG6575770.1 (Multifunctional methyltransferase subunit TRM112-like B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 35  EKQMAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEI 94
           EK+MAAGRVAHVTL+GPSVVKEIL GMG+ALFAGSFWKMHQWNEQRKVRAFYDLLEKGEI
Sbjct: 111 EKKMAAGRVAHVTLQGPSVVKEILIGMGVALFAGSFWKMHQWNEQRKVRAFYDLLEKGEI 170

Query: 95  GVVVDEE 102
           GVVVDEE
Sbjct: 171 GVVVDEE 177

[Close]

BLAST of Lag0002646 vs. NCBI nr
Match: XP_038897009.1 (cytochrome c oxidase subunit 5C-like [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 38  MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 97
           MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV
Sbjct: 1   MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 60

Query: 98  VDEE 102
           VDEE
Sbjct: 61  VDEE 64

[Close]

BLAST of Lag0002646 vs. NCBI nr
Match: KAG7014318.1 (Multifunctional methyltransferase subunit TRM112-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 32  FKLEKQMAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEK 91
           F +  +MAAGRVAHVTLKGPSVVKEIL GMG+ALFAGSFWKMHQWNEQRKVRAFYDLLEK
Sbjct: 147 FSISLKMAAGRVAHVTLKGPSVVKEILIGMGVALFAGSFWKMHQWNEQRKVRAFYDLLEK 206

Query: 92  GEIGVVVDEE 102
           GEIGVVVDEE
Sbjct: 207 GEIGVVVDEE 216

[Close]

BLAST of Lag0002646 vs. ExPASy Swiss-Prot
Match: Q42841 (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare OX=4513 GN=COX5C PE=3 SV=3)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-21
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 38  MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 97
           MA GRVAH TLKGPSVVKEI  G+ L L AG  WKMH WNEQRK R+FYD+LEKG+I VV
Sbjct: 1   MAGGRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKGQISVV 60

Query: 98  VDE 101
           V+E
Sbjct: 61  VEE 63

[Close]

BLAST of Lag0002646 vs. ExPASy Swiss-Prot
Match: Q8VY39 (Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus OX=4232 GN=COX5C2 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.6e-21
Identity = 48/64 (75.00%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 38  MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 97
           M  GRVAH  LKGPSVVKE++ G  L L AG  WKMH WNEQRK RAFYDLLEKGEI VV
Sbjct: 1   MGGGRVAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVV 60

Query: 98  VDEE 102
           VDEE
Sbjct: 61  VDEE 64

[Close]

BLAST of Lag0002646 vs. ExPASy Swiss-Prot
Match: Q9SXX7 (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica OX=39947 GN=COX5C PE=3 SV=3)

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-21
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 38  MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 97
           MA GR+AH TLKGPSVVKEI  G+ L L AG  WKMH WNEQRK R+FYD+LEKG+I VV
Sbjct: 1   MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVV 60

Query: 98  VDE 101
           V+E
Sbjct: 61  VEE 63

[Close]

BLAST of Lag0002646 vs. ExPASy Swiss-Prot
Match: Q9FLK2 (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana OX=3702 GN=At5g61310 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 38  MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 97
           MA  ++AH TLKGPSVVKE++ G+ L L AG  WKMH WNEQRK R FYDLLE+GEIGVV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 98  VDEE 102
           V EE
Sbjct: 61  VTEE 64

[Close]

BLAST of Lag0002646 vs. ExPASy Swiss-Prot
Match: Q9LZQ0 (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 38  MAAGRVAHVTLKGPSVVKEILTGMGLALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVV 97
           MA  +VAH TLKGPSVVKE++ G+ L L AG  WKMH WNEQRK R FYDLLE+GEIGVV
Sbjct: 1   MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVV 60

Query: 98  VDEE 102
             EE
Sbjct: 61  ASEE 64

The following BLAST results are available for this feature:

BLAST of Lag0002646 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646364.1	2.6e-30	93.24	hypothetical protein Csa_016441 [Cucumis sativus]	[more]
KAG6593239.1	6.4e-29	89.19	putative cytochrome c oxidase subunit 5C-3, partial [Cucurbita argyrosperma subs...	[more]
KAG6575770.1	1.6e-27	94.03	Multifunctional methyltransferase subunit TRM112-like B, partial [Cucurbita argy...	[more]
XP_038897009.1	1.6e-27	100.00	cytochrome c oxidase subunit 5C-like [Benincasa hispida]	[more]
KAG7014318.1	1.6e-27	90.00	Multifunctional methyltransferase subunit TRM112-like protein, partial [Cucurbit...	[more]

BLAST of Lag0002646 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42841	5.1e-21	73.02	Cytochrome c oxidase subunit 5C OS=Hordeum vulgare OX=4513 GN=COX5C PE=3 SV=3	[more]
Q8VY39	6.6e-21	75.00	Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus OX=4232 GN=COX5C2 PE=3 SV...	[more]
Q9SXX7	8.7e-21	71.43	Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica OX=39947 GN=COX5...	[more]
Q9FLK2	2.5e-20	70.31	Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q9LZQ0	3.3e-20	70.31	Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008432	Cytochrome c oxidase subunit 5c	PANTHER	PTHR34372	CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATED	coord: 33..101
None	No IPR available	PANTHER	PTHR34372:SF2	CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATED	coord: 33..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002646.1	Lag0002646.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005746	mitochondrial respirasome